Array 1 8632-7510 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPYC010000054.1 Bacteroides fragilis strain MSK.8.18 NODE_54_length_9616_cov_223.447, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 8631 47 93.6 29 ...A......A.............................G...... GGATCAATGTATGAAGGAGTCCCGTAGAA 8555 47 100.0 30 ............................................... ACCGTAACAACCGCCGAACTCCACGGACGG 8478 47 100.0 30 ............................................... GTTTCCTATTGTAAGTACATACGAATCATA 8401 47 100.0 30 ............................................... GATTCTGCGATAAGAATAGCCCTTGAGAAA 8324 47 100.0 29 ............................................... CGTTTATGTGCATTTCCTTTGTGATAAGT 8248 47 100.0 30 ............................................... AAAGAGTTCTCAAACAAGCTATCCGATTAT 8171 47 100.0 30 ............................................... AACGATAGACAAAAATTACAGCCTGCAAGC 8094 47 100.0 30 ............................................... AGCGAGGGCGGAACTTGCTAAGTTGGAGAA 8017 47 100.0 30 ............................................... TGATTGATAAGATTCATATTGGCATCGTAA 7940 47 100.0 30 ............................................... CTTCCCTACGAATACCATGTTAAAGTCTTC 7863 47 100.0 30 ............................................... AACCGTGCGATTCTGAGACATCGGAAGATC 7786 47 100.0 30 ............................................... CAAAGGTCTTAAGGAAATAGAGAAGGATAT 7709 47 100.0 29 ............................................... GTTAAGATAACCAATAAGACCTTCCATAT 7633 47 100.0 30 ............................................... CGTCCGAAGTTGTTGGTTTCTTTCGTTAAT 7556 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 15 47 99.6 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TCAGGGATGGAAAGAACAAAGCTTTTGCTTCTAAAAGACTTGTTCTTTGAAAACAAAAGACTTGATTTAACAGTGTGTTAAATCAAGTAATAGGAAGAGAGGAAACAAGAGGAGAAAAAGGATTGAGAATGAAGAAAATAGAGAAAAAAGGGGGTATTTTATGGGAAAAGGGATAAGTGGCGGATGGAAAGGGATAGTTGCGATTAGGACAAGCATGGGGGCAGGGGATTTTTAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGTTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : AGATTTCACATAACATATTGTTCTTCAATAAGTTAAGAGTAAATTAGAACAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTGTTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 22077-22224 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPYC010000012.1 Bacteroides fragilis strain MSK.8.18 NODE_12_length_145675_cov_181.128, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 22077 26 96.2 35 ...................T...... CATGATGAAGGTACATAACTCAAGCCACAAAAAGC 22138 26 100.0 35 .......................... CCTTGCTTATCAAACAAATACTTAGTATTTTTGTT 22199 26 96.2 0 ........................A. | ========== ====== ====== ====== ========================== =================================== ================== 3 26 97.5 36 TCAAATTCACAATATATTGGGAATTT # Left flank : TACCGACACCGGGGAAGTAAACTCCATACTCAGGCTGTCGGACTATGGGAGGAAGGGAACGACGGTATGGAAACTGATTGCCAACACTTGCTGGAGCGACATCGGAGCCAAAGGAAGATACCTGATAGCGGCGCTAAACAAGACGAAAAGAAGGTAGCAGAGAGTGTCAGTCCCCTATTTGTAGTTGACAAAAAAGCAAGTATACAGGCTTTTGACCAGAAAGGGATTCAGTGAAACAAAGAAGTAAAAAGTGTGCTTAACGAACTAAAACACAGTGTTTTTAAAGCACAAGATTTCTCTCGCCCAAAGCTTTGTTTTAACGCTACGTTAAAGCTTGTTCCTTAAATGCAAATAGCAAGTGTTTTCAATGCAAAAGGCTTGTTATTTGCACACAAGAATAAAATAACGGAGAAATGGCGTTAACAATGTTAATTGAGAAACACTCTACAAACAAAAAGAAATCTCTGTCATTCTAAAATCAAAAGTACAAATAGCCGTAA # Right flank : TGAAACAAATTGGAATACAGATTCGCCAACGAAGAAAAATGTTGGGTATAAATCAGCAAACACTTGCCGATTTAGCACAAATCAGTATCAATACTATAACAAAAATTGAAAATGGAGAAATAAATATTAATTTTCAAAAGCTCTATGCCATATTGGAGGTATTAGGATTAGAACTTTCTCTGAAAATTAAAAATAAGGAGGGACATCTATGAGACAAGGAGTCGTATACTTGAATAAAGAACGGGTAGGCATTATTACGGAATTATCTTCTAACGAATATAAATTTCGCTATGATGACGAATATTTCAATGATCCATCAAAGCCCTCCATAAGCCTGACATTGACAAAACAACAACAGGAATATACTTCCCATTATCTATTTCCTTTTTTTGCCAACATGCTGTCAGAAGGGCACAACCGCATCGTTCAGGCAAGATTATTGCAGATTGATGAAAAAGATGATTTTGGTATTTTATTAGCTACAGCACATACCGACACGG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAAATTCACAATATATTGGGAATTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //