Array 1 351811-350762 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTD01000002.1 Photobacterium damselae strain NCTC11646, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 351810 28 100.0 32 ............................ ACGCATATTCCTTACCCGGCGCCGGACGTAAT 351750 28 100.0 32 ............................ AGGTACGCCTCTGTAGCGTCGTGTAATAACGC 351690 28 100.0 32 ............................ TTGGACGATACTATCGCTCAGTGGGCGGGCAA 351630 28 100.0 32 ............................ GTATGCTGGTAACGATTCCCACACTGCGCTGT 351570 28 100.0 32 ............................ ACCTTAGAGATAAAGGTATTAAGCATCACAAC 351510 28 100.0 32 ............................ AATAAACGTTAGCCCCGCCTCCTGATACTTCG 351450 28 100.0 32 ............................ TTCTTCACGCCAGCGTTTAACGCGTGTACCTT 351390 28 100.0 32 ............................ TGTCGTCGCCACAGCTGGAACTGTCACGATTC 351330 28 100.0 32 ............................ GAAGTCGCTAGACGATTAGGTATTGGTCGAAA 351270 28 100.0 32 ............................ GCACAGACCTATAGGTAGTTTCGTGCGTAACT 351210 28 100.0 32 ............................ ACATGTTTTGCTGATAATGCTCGCATGGGTGA 351150 28 100.0 32 ............................ CGTGTATTTACTGCCTATAAACTTCTCAAATC 351090 28 100.0 32 ............................ GACCCAAGATGAGCAAGCAGGTTTAGCCTTTG 351030 28 100.0 32 ............................ AGCTAATAACTGTTACTATGATCATGAAACTG 350970 28 100.0 32 ............................ TCCCAGTTCTCCCCAAGTGGGGTTAAATCACG 350910 28 96.4 32 .................T.......... CCAAGCCTTGCACACTCAGGGCACTGACAAGA 350850 28 96.4 32 ...............A............ AAACTATGGCTTGTTGCAGTAAGCGAAGAAGG 350790 28 82.1 0 ...........CA........C..CT.. | A [350768] ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.6 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GATGAACTAATGGCTTTACCTTGGTTGAAAGGTTTGCGTGATTACACCAAAGTTAGTGCAATCTTACCAATACCTCGTGATATTGCAGGGTATCGCACTGTGCATCGCGTGCAAAAAAAGAGTCCTCATAATTTGCGTAAGCGTGCGGTAGCAAAAGGCCGAATGACTGAACAAGAGGCTCTGACGAAAATCCCTGATGCGTTACAAGAACGATTAGCTTTACCTTTTATTCAGATGCAGAGTTTGTCGAATAAGCAGGTAATGCGTGTTTATGTTGCGCTAGGAGAGATTCAATCAGAACCTGTTTTGGGTGAGTTTTCTAGTTATGGTATGAGCCGCACATCGACCATTCCTTGGTTTTAATCTGTAGACCCTTTTTTTGAGCTTATACTTAACTTATTGATTTATAAATAAGATTGTAATGGGTGAGAAAAAAGGGTTTTTTATTGAAAAATGACTTAAGCTCTTTAAAAATAAACCGAAATCGAATAAAGTCTTCA # Right flank : GTAAACTTTGGAGCTAACCTTTGCTTTTGGTATCCTTAGTGCTTATCGCTAAGATCATTAGCAAAAGTATAAACATAGGTACTACATGCTCACAATCTCAAACAATGTGACGATTTCCGATTGGGAGATTGAACTTAACGCTATTCGCTCTGCGGGAAATGGTGGGCAAAACGTCAATAAAGTAGCCACAGCAATTCATCTTAGATTTGATATTAAGAAATCATCACTGCCAGCTATTTATAAAGAAAAATTACTTAAGCTATCAGACAGTCGAATTTCTTCTGATGGTGTGATCATCATTAAATCGCAGCAATATCGAACCCAGCTGCAAAACAAAGAAGCTGCTCTTGAGCGATTAAAAGAATTGATTTTATCTGCGATGGTTGTACAAAAAGCCCGCCGTCCAACAAAGCCAACCAAAAGCTCCCAGCGGCGTCGTTTAGAGTCAAAAACCAAAAGGGGAACGACTAAAACGATGAGAAAGAAGGTTGATTATTAAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 361316-360268 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTD01000002.1 Photobacterium damselae strain NCTC11646, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 361315 28 100.0 32 ............................ TGTTAGTATCGAGCCTGTCGTTACTGAAACAG 361255 28 100.0 32 ............................ GTACCAACTAGCGTAATCGCGACATTCTGAAA 361195 28 100.0 32 ............................ TAAAATCGTAACAATAGTCTGACAAATAAATG 361135 28 100.0 32 ............................ CGTAATTGCTCAGAATCATTCTTGATGTACGA 361075 28 100.0 32 ............................ TATTAAGAATGACAACAACACAGGATGGATAA 361015 28 100.0 32 ............................ CAATGGTTAGAGGGGAAATCCCCCCAATGGTA 360955 28 100.0 32 ............................ ATACTCATACCTCTGTTAATGGCCATCATTAC 360895 28 100.0 32 ............................ ATTCGTATTGAAGAACCTCGCCAAGGAATGTT 360835 28 100.0 32 ............................ ACGTTCGGCAAGTATTGATTCTGTCGTTTGTA 360775 28 100.0 32 ............................ ATATCGTAGTCGCGTATCGCTGCTCGGAAATC 360715 28 100.0 32 ............................ GATATTCCAACACTCATCACTATCTTGTTTTG 360655 28 100.0 32 ............................ CGGAAACTAAGAAGTTAAACAGATGGTCTAGT 360595 28 100.0 32 ............................ AACGCTTGAACCCGTAATTACATCAGGCTTCG 360535 28 100.0 32 ............................ GATATTCCAACACTCATCACTATCTTGTTTTG 360475 28 100.0 32 ............................ TGCAAGCGATTGTTCTAGAAAACCAGCACCGC 360415 28 100.0 32 ............................ AAACGAAGTTAAAGCGACTATCGAGCAAATCG 360355 28 100.0 32 ............................ TCGACAACGGGCGCTGTTAAGGTTTATGTTGA 360295 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GCTTCATCAGTGTTTGTGACAGTGTGGCATATCTTATTGGTTGGCAAAAATTGGTTTTAAAATGGTATTACCGAAAGAGTCAGAATCTGGCGGTTGATTTCCCTGAAACAGGGTACAAATGGAATCAGTTGGGTCTATTAGCACAAAGCTTTTATGTAGAATATCGTGATTGGACTTATTCAGAACTGCTTTCTGAGTTTGAAAGTAATATGGAGCAGATTCTTGTTATTGTCGCATCATTATCTAATCATCAACTCTATCAAGAACCATGGTACGAAAAATGGACGTTAGGGCGAATGATTCAGTTTAATACCTCATCGCCAATGAAAAATGTCAGAACTAAGGTACGAAGATTTAAAAGAGGGATGTGACCCTATTTTTTGACTCATTTATAAGTTATTGATTTATAAATATGTAAAATAGGACGCAGAAAAAAGGGTATTTTAGAATAAAGTGGTCTAAGTTCTTTAAAAATAAACCGAAATCGAATAAAGTCTTCA # Right flank : TGCAGGCAGAAATTCGCAATGGTTTGGACCTGCTTCATTACCGAATAGGTAGATAAAACTTAGACATATTTCACTCTTTAATCTGATATTTCGTCATTCTTGCCAATAAAGTCGCATTTTAAATTCATCCTGTTGAATATACTAATGCCATGATAGTTAACGCATTGATATGATGTTAAAGATGAAAAAGGACTTTTCTCCTAGCGAGCTCAAAACCATACTCCACTCAAAACGTGCCAATCTTTATTATCTTCAGCATTGTCGAGTGTTAGTAAACAGTGGGCGAGTTGAATATGTTACTGATGAGGGTAAAGAGAGTTTATATTGGAATATCCCCATCGCCAATACAACCGCCATTATGCTTGGAACTGGTACATCGGTGACTCAAGCTGCTATGCGAGAGTTGGCTAAAGCTGGTGTATTAGTCGGTTTTTGTGGTGGCGGTGGTACTCCGCTTTTTTCAGGTAATGAAGTTCAAGTTGATGTCTCTTGGCTTTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //