Array 1 457-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJX01000957.1 Streptomyces sp. SID3343 SID3343.c1135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 456 29 96.6 33 ............................A GTCGAGCATCCGTTGCAGTACGTTCGCGCCCGG 394 29 100.0 32 ............................. GACCGTCGCGGCGGACGCGAACTCCCTTGAGA 333 29 100.0 32 ............................. TCGGCGCTGACCCTGGTGTTGACGTGGGCGGC 272 29 100.0 32 ............................. CACTCCGACGACAGCGACACGCGTGCCGCGCT 211 29 100.0 30 ............................. GAGAGAGAGTCTTCAAGGTCAACAGTCTTA 152 29 100.0 32 ............................. GCGGCCACCGCGTCCTCGACTGGATCCCCGGC 91 29 100.0 32 ............................. TCGGTGTCGTGGGTTGAGGGGTCCGGTGCGGT 30 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.6 32 GAAGTCCCCACACACGTGGGGGTGAACCG # Left flank : CGGCACCGAAATCGCTCTGCCGGTCGCCAAAGAGGACATCGTCGTACTGAAACGCCGAGGCAGTGCGTTCGCCGGCACAGACCTCGACCTCGTGCTTCGCGCAAGCGGCGTCACCACCATCGCAATCGCCGGAGTCGCAACCAGCGCCATGGTGGCCGCAACGTGCTACGACGCAGCAGACCGCGACTACGAGGTGACGGTACTACTCGACGGTTGCGCCGACGCCGACACAGCCATGCACGACTTCTTCATGAACGCGGTCTTCCCCAGCCGAGGCTTCAAAGTCCTACCCTGCGCCGACTGGCCCGCAACCAACACACAACCCACATCATGAACCGAACCACGAACCTCCGCACAAAGGCGGCCAAACGCACACGATCACCTACCCCCAACCCCACACAAAACCCCTGCACAACCCCAATCAGGCAACACCCTTGCCGCAATACCCAAAACGCCATAACGAATCAGCAACACCCCCCAAAACCCGCAGGTCAACAAGG # Right flank : GC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCCCCACACACGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8593-8805 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJX01000720.1 Streptomyces sp. SID3343 SID3343.c847, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 8593 30 100.0 31 .............................. CCGCGCACCTCGACCTCTTCCGGAACGTCCG 8654 30 96.7 31 .............................T TCGACGACAAGGGAATCAACTCCTGGTCGCA 8715 30 100.0 31 .............................. CGATGTGCCATGCCGGAGTGCCGTAGCAGAC 8776 30 83.3 0 ............T........T....GG.T | ========== ====== ====== ====== ============================== =============================== ================== 4 30 95.0 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : CCCAGTAGCGCATCACACGGGCGCTGCTGTGCAACGCGAAGAGAAGGTCCGCGTCGGCGGCGGTGAAGGGTCGCAGTCGCAGGCGAGCAGTGCGCAGGGTGGGAGCCGCCAAAGTCATGCGCACCATCTTGCGACCTCGTGGGGTGAGCAGTACACCGAATATCCGACCCCGGCCCGGACCCCTCGACGAAGGAAACACTTGCCCACCAAGGCCCGGGCCCGGGCCCGGGATGTCGGCACAGGTACCCGCGAGGACTATCGATCGCCGCCCTATCGCGGCGGACCGCATCGGCGCGGCAAGGCCGTGGGACCCCTGCCGGGGGAGACGGCTGCGCCAACTGCCCCCGGACGGGCACAGGATCACCGGTAGTATCCGCCTCGGGCACTCGGTCGGTGTCCTGAACGAGTCACCCGAAAAATGCCGATTACCCAAAAAGCCGGATCCTCCAAAACTGCCCGCTCACCCCACCCGCCGGCACCGAATGCCCAGGTCACGGAGG # Right flank : TCAGCGATGTAGTAGGGCCGGGGCCAGTTCTTGCCATTCGGGCATGGGGAGTTCGGTGGGGTTGTCGGTGAGGACCTGGATGGATACGTGGTTGGCGCCGGCTTTCAGGTGGTCCTCGACTCGGGCTTGGATGGATTCCACGGTGCCGTGGGCGACTATTGCGTCTACCAGGCGGGGGCTGGGGCCGCCGGTGATGTCGGCGTCGGTGAAGCCCAGGCGGCGGATGTTGGCTTGTTGGTGGGCGGCGCTTGTCGTGTAGCCGTGGACGTGGGCGGTGGCCAGGGCTCGGGCTCGGGTTGGGTCGGGATCCAGGACTACGGCTTGTTCTACGGCCAAGTAGGCGTCCGGACCCATGAGTTCACGGGCCTTGGCGGTGTGGTCCACGGAGACGAAGTAGGGATGGGCGCCCCACGTGCGTTCGGCGGCGAGCTTGAGCATCTTGGGGCCCAGGGCGGCGAGGAGTCGGCGCGGGGGTGGCGTCGGGACGGGGCCGTGGGCCG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-246 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJX01001070.1 Streptomyces sp. SID3343 SID3343.c1266, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1 31 83.8 35 ------............................... ACGTACGCGCGATGGTGCGTGGACTCCAGCCGCTT 67 37 100.0 35 ..................................... TACGGGCTGCCGGCTACCCATGTGGCGATCGTGAC 139 37 97.3 34 ....................C................ GGGCACTTGACCAACGTGCCCTTGACGCTGACCT 210 37 97.3 0 .....A............................... | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 94.6 35 GTGGCGGTCACCCTTCGGGTTGACCGAGGATCGCAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCACCCTTCGGGTTGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTTCGGGACGACCGAGGATCGCAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-273 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJX01001162.1 Streptomyces sp. SID3343 SID3343.c1373, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. GTCTGCTCTTCGGTGACATTTTCTTCCCATAC 62 29 96.6 32 .................T........... AACACCGTAGGCGCCCGTGTTCGCCATTGACA 123 29 100.0 32 ............................. GCTCCTCCACACACCGGACCCGAACACACCGT 184 29 96.6 32 ............................A TGGCAGTGCACCGTGCGCGCGCCGAACGGAAA 245 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GAACTCCCCACGCAGGTGGGGGTGAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAACTCCCCACGCAGGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21078-21676 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJX01001373.1 Streptomyces sp. SID3343 SID3343.c1639, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 21078 29 100.0 33 ............................. CGGGCCGGTTCCGTCGGCAAGACGACGGAAAGC 21140 29 100.0 33 ............................. CGAGTCGGTCACGTTGCTCCCTGGGCTTGTCGG 21202 29 100.0 32 ............................. CAGGCGTCATCGGACAATTCGTCTTCGGCGCG 21263 29 100.0 32 ............................. TCCTCGACGACACCGCCGGGTGTCTCGCCGGT 21324 29 100.0 32 ............................. AACTCATGCCTGACGAGCTCGTCCAGGACGCC 21385 29 100.0 32 ............................. GCCGACGCCGAACGCGGCGTTGTGGTGTTCAA 21446 29 100.0 32 ............................. AGCGAGACCTTGTCGGTGGAGCCGTCGACGAG 21507 29 100.0 32 ............................. GGCCGGCCGTCCCACTCCGAGGACACGCGCCA 21568 29 100.0 51 ............................. AGGTCACGGATGTGCATCTTGTGCCGGGCCATCTCGGTGATTCCGAGATTC 21648 29 93.1 0 .........................A.G. | ========== ====== ====== ====== ============================= =================================================== ================== 10 29 99.3 34 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CCAAGGGCGGCCAGGTGTGCTGGGTACCAACGAGTTTGGTGGCGCTGGAGCCGCCGAACAGCGCCGAAGGCATCGTCGTGCGTGCTCCGGATGAGGTGCCCTCTGCGCTCTCAATCGCCCCATGTCGTCTCCAAGACGCCCGAGATGGGCGCGGCTCCAGCCACACGCTGCGAACAGATACCGCGTCTTGGAACCATCGCCTCGTCGTACCGATTGACTCAATCCCGGCGCGAGGCGGCGGAGGACGCAGGCTCAAGCCGATCGCATACCTACCACGAGCACGGCCGGCGAGTTGGACGAGCGACGTCACCGCGAGACTATGACCGCAGGCGGGATGGCGAAGTTCGCGGTCCGTGAACCTGGGTCGTCGGTCCTGTCCGTGAGTCACGTTCACGCTCGCGCCATTTCTTACTAAACGTCAGAGAGAAGTGCATATGGGCGATTCAATGAAACTGCTCGCCAACGCACTCACCGCAAACTAAACCCGCAGGTCATCGAGC # Right flank : CGTGGACATCACGGCTGGGGGCGGCCTCGGATGTTGTTGTGGGGCTCTGGTGGGTGGGTGTGTGGGGAAGGGGCTTGGGAATTGGGTTGGTTGGCTGGTTTGTGGGGTTGTGGGATGGGTTTTGGTCTGGGTGGGGTGGTGGAAGGTTACGATCGGGCCAGTGGACCGTGATGAGGTAAGGGAGTTGCTCGCCCGCGTTGCTGCCGGGGAGGCAGGCGTGGACGAGGCGTTGGACGCGCTCGTGCGCGGGCCGGCGGCTGGGTATGCGGATCTGGGGTTTGCTCGGGTGGACACCCATCGGGGGTTGCGGACCGGTGATCCCGAGGTGGTGTTCGCGGCCGGCAAGACGCCTGCGCAGACCGTTGCGTTGTTTCACCGGCTTCGTGCCTCCGGCAATCGCCCGGCCTTTGCCACGCGTGCTTCCGCCGATGTGGTCGAGGCCGTGCGCGCGGCTTTTCCCGGTGCGGCCTACACCGACGAGAGTGGCACGTGTGTCGCGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1261-1778 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJX01001433.1 Streptomyces sp. SID3343 SID3343.c1704, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1261 29 86.2 32 ..T.........C...........G...C TGGGTGAACTCGAGCACTCGATCGGGTTGTTC 1322 29 89.7 32 .............G..........G...C ATCGACTCGGTCCTGTCCCGGCTCGGCGCCAT 1383 29 100.0 32 ............................. CGATCGAACCCCTCACCGTCTGGGACAACGAG 1444 29 89.7 32 .......TT...................C CGTGGCATGCGCAACAGCCAACGGATCGTGTT 1505 29 89.7 32 ........T...............G...G GGCGATGTCGACTGGGCGGCGGCGGACGCCGC 1566 29 82.8 32 ..................AAA...A...C AATCGGCGCTCCGGCGGGGGATCGTGGGGGCT 1627 29 89.7 32 ........................GC..T GACACATGTTGTGTCACCGTGTGGCACTCAGA 1688 29 93.1 32 ........................G...T CGGGCATGACGGGGTCGGGGGTTTCTTCCGCT G [1696] 1750 29 82.8 0 ..T..T..................G.T.G | ========== ====== ====== ====== ============================= ================================ ================== 9 29 89.3 32 GTGGGCCCCGCGTTCGCGGGGATGCTCCA # Left flank : CGCCGTTTCAGCGGCGGGACCGGACACGTTTCGGGGTACGTCGGCAGCGGTGGCGCTCGGGTACCGGCGGAGGCGAGTGTCCCGATCTGACGCGTGCGCTCTTGGCCTCGGCTCGCGAAGGCGGGCAACGCGGGGTGGGAGCCGTACCGCGACGCACTCTCGCCGTCCGGCAGTCAGGATCCCGAGAGCGGCCGGCCTTCTCCGGGTGGTGGTTCAACATCACCATGGGATCGTGAGCTCAGACGACTCGCCCCGCCCAGGAGGCACCTTTCTCCCGCGAAAGCCCGCTTTCCCCGACCTGGCCGCGATTACACGACAGGCAGCGGCAGCTTCACGAGAACAGGGCCGTGTCACCTACCTTCTCGTCGATCGTTGCGTGTCGACCGCATCAGCCCAGCCTGTACCTTGTGGGCGTGGCCAGGTGACGTTGGAGAGTCAGTAGCATGAAGCAACTAAATGAGATCCGCGTTACTCGCCGGTAGATGCCCAGATCAGGCAGC # Right flank : GCAGGAAGGGGAGCAGGCGTGACCATCACCGACGTGGGCCCTGCGCTCGGATGGTCCTCCGTGGTTGCTTTCTTCGCGGCCTTCTTCGTCGTGGGCCCGCGTAGCCGGTGGGCACCCCGGCGGCACCGTTGTCGGTGGACGAAGTCTCCATGCGAGTGGGGGTGAGCCGGGGGTGGGTCCAGTTGCCCCGCCCCGTTCGCTGCGCGAGCGTAGGGGAGTCGCGAACGCTCCCAAACTCTTGTGGTGCGGGAGCGAGCCGGTGAGCCGGGTCGGGAATGCTTTCGGGTCGTGCCTCGGCGGGGTTGACGGCCAAGGCGATCTGGTGCGGAGTCTGCGTGGCCGTTTGGCGGGCGGTACCCGGACAACGCGCGGGTGGTGGGGGCGGTAGGCGGTCAGCGGCGGCCGGTGGCGAGGGTGACGAGGAACTGGCCGCCGCCCGCCTCGATGTCGGCGGTCACCGGCAGGCCCGGTACCAGTCGGGAGAGCCGGTCCACCAGCCA # Questionable array : NO Score: 3.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGGCCCCGCGTTCGCGGGGATGCTCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGTTCCC with 88% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-334 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJX01000240.1 Streptomyces sp. SID3343 SID3343.c282, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. AGCGGATGCGCTCACACGATCGTACGAACGTC 62 29 100.0 32 ............................. CCGAAGAGATCCGATATCTGGGAGGGCTTGTA 123 29 100.0 32 ............................. ATCCAGTACGCCCGCACCCTGGCCGACTCCGG 184 29 100.0 32 ............................. AGCACCTACAGCGGCAATCAGGGTGGCGACTG 245 29 96.6 32 ..................A.......... CACCCGCTCCTCGCGGCAGTCGTGGTCTTGGT 306 29 96.6 0 ...................A......... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GAACTCCCCACGCAGGTGGGGGTGAACCG # Left flank : | # Right flank : GTCGCTGGTGCGCATGCGGGTGATCTGCTTTTCGATTTTCTGGTGTGCCTCGTTGAGCAGGGCGTATTTGATGAGGGTGACCTGGGCGATCTTGCTCAGCGGGGTGGGTCCGATGAACGGTCGGGCTCCTCTCTGCGTTCTTCGGGGAGCGCGGCCCGGAGGCCGTCGGGAGTGTCGGGGAGGGTGATGGTGCGTCTGCGGACGTGGGGTGGGAGGGCCGTCCAGGGTGGCATCGCGCCCGGCGTGTTCGGTAGCAGGCACATTCGGGTGGGGGGTGCGACCCGGTGTGCGTGCTGCGGCCTCCGGGGCCGCCGCTACCGTCGCGGGAGGATTGATTGCTCGGCTTCGGTCTGGTTCGGCAGCCGTAGGGTGTGTCGTTGCAACGACTTGCCCGCTCTTGACGTTCGCGTCGATGGCGTCGGCAGGACTTGATGTGGAGCTCCGTTATGGCGCCGGACGCCGTGTAGGTCGTCATGCTGAACCGAAGCTACTCTGAGTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAACTCCCCACGCAGGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 824-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJX01001620.1 Streptomyces sp. SID3343 SID3343.c1923, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 823 29 100.0 32 ............................. CCTCCGGCGTGATTCGCTCCCGCAACATCCGG 762 29 100.0 32 ............................. CCTACGCCGATACCACAACGCAGGAACCCCCC 701 29 100.0 32 ............................. TCCGTACAGGCGAGATAGCTACCCCTGCGAAC 640 29 100.0 32 ............................. GATCGCCACCGGCCGCGGTTGAGTCTTCCCGT 579 29 96.6 32 ................G............ GCATCGCGCGCCGAACGCGCCAACGCCTGCTC 518 29 100.0 32 ............................. TCGCAGACCTGCCCCACGGACTCCACAAACAT 457 29 100.0 32 ............................. GGTGTCCTGGACGGCGCCTTGTACGAGGTGGA 396 29 100.0 32 ............................. ACGTGTTCGAGTCCCGCCCCTACAGCGCCGGC 335 29 100.0 32 ............................. CGCGCGGGGCTCGACGGCGACGACCAGGAGCA 274 29 100.0 32 ............................. TCAAGCGCGCCGCGAATAGGTGGCTACGTGAG 213 29 100.0 32 ............................. TGCGGTCCGCCGCACAACCTTTTGCTGTTGCC 152 29 100.0 32 ............................. GGCTTGAGTTCGGCGTCGATCTGTGGCATGTC 91 29 100.0 32 ............................. CCGAAGAGATCCGATATCTGGGAGGGCTTGTA 30 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAACTCCCCACGCAGGTGGGGGTGAACCG # Left flank : CGGCACATGAAGATGGAACAACTGTCACGTGCACCAGTCCCGGTTCCCGTACACACCGGCCCGCAACGCGCAGCCGAGCCCCGACCGCAGCCACACTTACCTTCGGCCCGGGATCCACACCGTCACCGCCACCACCCACCGGGACATCATTTGGGCAGCCGGTGGATAAAATGGCTCTCGCCACCACCCGCACGACCACCGCCGGGGACATCCGCACCACTGAGACGCAAGCACTCATCTCCAAAACCCCATACCACCCACCGCCGAACCGATCCCGCACCGGCAACGACTGGCCCGAACGACGACGCCCACCAGCCCGACAAAACAGCACTCGGCAACTCCGAGACGACCCATCAAGGCCACGACGGGCATGCGACATAAACAGTCAACCCGACCCAAACAGGAACTTCGACTTCAGAATTCAGGCAAGATAGATTCCTCAATACTCGTATTCAGATCACGATTCGGCAAAGCCCCAGGAAACCGCCAGGTCAACAAGT # Right flank : GA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAACTCCCCACGCAGGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37880-37567 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJX01000257.1 Streptomyces sp. SID3343 SID3343.c307, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 37879 28 67.6 35 ---------........G.T..A.............. GATGTCGCCGGTGTCGAAGAAGAGCGTCCACTCGT 37816 37 91.9 34 .................G.T..A.............. GTGCTGGAGGAGCGGGTACTCAAGCGCCCGGTCG 37745 37 100.0 36 ..................................... GCCTGTCCGGTCATGAAAGCGGAGACGTCCTGACTG 37672 36 91.9 33 ..........-......G.......A........... GTGCCCGCGCCCCGATGACGTCCGCACCCCGGA 37603 37 59.5 0 TC.TG.CGGT.G.CCTTC..A................ | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 82.2 35 GTGGCGGTCACCCTTCGAGGTGGCCGAGGATCGCAAC # Left flank : GT # Right flank : ACCTACTATCCACCGATGGGCGACCAGGCGCAGCGGGTGGCGGCCGTCCTCGGGGTGGTTCGGGACGAGGAAATATCCGCCGCCTTTGCCGCGGCTCGGGCCCGGCAGGCCGACGTCCCCGAGGAACTGCACGCCGTTGACGACCGGCTCGGTGAGCGTCCGGCGCCAGAGGTCGTCCGCCAGCCTTTGGATACCCGGCGCCGCGTCCACCACTAGCGGCCCGGTCTCGCCGAGGTCCGCGAACGCCATTCCTTAGATCACATCGCAGTTCGGCGTCGTGACGACCGTCTGCGGCTTCAGTCGCTGCGCGAACACGTCGCGAGCGGCGAGGCGTTTCGGGAGCATAGCCGCGCGGTCCGGCTCGGCCATGTGCGCCCCGATCCAGGCAGCCGCCGACACCGTTCCCTCGAATGGGCCACCCCACCCGGCCCCTTCGACGCCGACGGGAACGCTCTCCTGGGTTGGCGGCCCAGGCCGTGACCACAGTGGACAATCATTCG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.11, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCACCCTTCGAGGTGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTTCGGGACGACCGAGGATCGCAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.50,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //