Array 1 27-1275 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNID010000025.1 Bifidobacterium adolescentis strain 1001099B_141217_F6 NODE_83_length_1299_cov_60.5563, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27 29 100.0 32 ............................. CATGAGTAAGGAAACACTCGAACCGCCACTGC 88 29 100.0 32 ............................. TGCTCACCGGCGAATTGATGGATATTAAAGCT 149 29 100.0 32 ............................. GCTTTGGCCTCGCAGTTCGGCCATGAGGTGCG 210 29 100.0 32 ............................. GATAGCCTGATACGTGCCCTCTTGGTCTGAAA 271 29 100.0 32 ............................. GTTCATCATCGGCACCGTCGCTTTCGTGATGG 332 29 100.0 32 ............................. ACGATCGCGGGCATCAACGCGCAGGTGCAGCA 393 29 100.0 32 ............................. TGCACGATGGCGAAATACGGCCTGCCGGTACG 454 29 100.0 32 ............................. CATTGGACGCGCACAATCTTACCCAAGTCGGT 515 29 100.0 32 ............................. CGATTACGGTGGTCAGAAACAGCTGTTCGACA 576 29 100.0 32 ............................. GACGGCATCCTGCGTTGCGGACTTGATGAAAC 637 29 100.0 32 ............................. TCCAATTCATTCACAAAATCACTATCACCATA 698 29 100.0 32 ............................. CCGACGTGCACCTCGAGGTCGCCGGCGTCAAA 759 29 100.0 32 ............................. GGACGGTCCTGCTGGTCGAGCGCGACCAGCAC 820 29 100.0 32 ............................. TGCACGCTGCCGCAGTTGCGGTTGGCGACGAT 881 29 96.6 32 .......................A..... ACGCGAACCTCAGCCGCCCACTGACCTTGAGC 942 29 100.0 32 ............................. TGTTCTGCAATGCGCCGAAGGACGCGTTGAAT 1003 29 100.0 32 ............................. GTGTCGCGTGGCGATCTTGTGCAGGTGGTGTC 1064 29 100.0 32 ............................. GCCGAGACCATCAAGAAGGCCATGAACGACAG 1125 29 100.0 32 ............................. ACATGGCTCCGCGACCAGTGGGAGACATGGGC 1186 29 100.0 32 ............................. GGTAGCGGAACCGCTAGCGAAACGTCTGGCAA 1247 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.8 32 GTGCTCCCCGCACATGCGGGGATGATCCC # Left flank : GTCCTTGGATCCCGAACGCCCCTTTGG # Right flank : TTGGCTCCCTGGATGGTCTTGTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [16.7-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5295-6605 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNID010000013.1 Bifidobacterium adolescentis strain 1001099B_141217_F6 NODE_44_length_6630_cov_59.8546, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5295 29 100.0 32 ............................. ACGCTCACCCTTGAAACTAAGATTGAGCCGGG 5356 29 100.0 32 ............................. GGGCACGGCTTCTGCTCACTGCCAGCGTCAAG 5417 29 100.0 32 ............................. AAGGCTAGCGAACTGTGGCCGCTGTATCGTAA 5478 29 100.0 32 ............................. CATTTGCAAGATTCTTTGTCATGCCCCGAAAA 5539 29 100.0 32 ............................. GGCTATATCGACTTAATCGACACCCGGATAAA 5600 29 100.0 32 ............................. GGAATGGCATCTCCGTAGAGGAGAATCTTTTC 5661 29 100.0 32 ............................. GTTAGGAAAAAAAGCGCATTAAAACCACTCCT 5722 29 96.6 32 ............................T CAGTCCAGGGACGGCGGCGAAGCCGCACTTGA 5783 29 100.0 32 ............................. ATTGGGTCGGATTCCGGGTTGTCGGGGTCGAC 5844 29 100.0 32 ............................. TGGCACGCCACGCCTATGCCGACAATGCTTCT 5905 29 96.6 32 ............................T AGCGACACGCAAATGCAAGCGATTATGTTACG 5966 29 100.0 32 ............................. TCGGTAAGTGGAAGATCGCCGCCAAATATGAA 6027 29 100.0 32 ............................. AAGAACTATGCCACGGGGGAGAAGCAGGCCAC 6088 29 100.0 32 ............................. GCTTTCACGTCGTGGCAGCCGACGGTCGAGAT 6149 29 100.0 32 ............................. ACGCGCATCAGTGCGACTTCCTCGCAGTTGAA 6210 29 100.0 32 ............................. CGACGAGGAACTTGCCCAGGAAACATACACTG 6271 29 100.0 33 ............................. TGTTGAATCGGGCGTATCCGTGCGAGGAGTGGC 6333 29 100.0 32 ............................. TGTTGCCGGTGGCTGTGTCGATAAGGTCAAGC 6394 29 100.0 32 ............................. ACGGTGCACTCACCAATAGCAAGTTCCTTGGT 6455 29 100.0 32 ............................. GCCGACTATGTGCTCGGCCCGGACTACCGGTT 6516 29 100.0 32 ............................. TGCGGCAGGCTGGACTGGATCCATGTCTCGGC 6577 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.7 32 GTGCTCCCCGCACATGCGGGGATGATCCC # Left flank : TTGGGCTTTGGGATGATAAGCAGGGCGAGGTTTCTGCAGGCAAGTCCTACTCGGATAATGACGAATGGGATGGTGGGACATGGTAGTGATTGTGCTGACTGCTTGTCCTGTGGGATTGCGGGGTGATCTCACTCGTTGGTTGCTTGAGATAGCCCCAGGAGTTTTTGTGGGACATATCGATGCTCGAATTCGAGATAGGTTATGGGAGAGAATCATTGATTTGCTCAGGGATGGTCGTGCCGTAATGGTTTATTCGGACAGAAATGAGCAGCATATGGCTTTTAAGGTGTATGGGGCTGACTGGTCACCGGTCGATTGCGATGGATTGCAATTGATCAAACGTCCTAAGGAAGCAAAAGAAGGATCCTTTGTTGGCACTCCTAGAAAAGGATGGAGTAATGCGAGCAAATACCGAAAGGCAAGGAAATTTTCAAAACGAAACTGAATGAAAAACAGCCAGTTGTCCTTTCTTTTCCTTGGAATTATGCTATTTTCGAAGT # Right flank : ACTTCCCGAGGGATTTTCATCTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39310-37987 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNID010000034.1 Bifidobacterium adolescentis strain 1001099B_141217_F6 NODE_97_length_39335_cov_42.9172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================================================================== ================== 39309 29 100.0 32 ............................. TGGTCGTTGCCCTTGGCGTTGTGTTTGACGGA 39248 29 100.0 32 ............................. TGATCGAGGAACGCCGCAAAGTCTCCCAGCTC 39187 29 100.0 32 ............................. AGATAAAGAGCAGCTTTGTCTTTCCAACCGTT 39126 29 100.0 32 ............................. GGACTCCTGCAAGGCATCGTCGCAAGCCTGCC 39065 29 100.0 32 ............................. TTGTGACTTTGGCCGAAGCTGCTACCCCGGTT 39004 29 100.0 32 ............................. GACAAGGTGGTCTACGAATTCGCCACGAAACT 38943 29 100.0 32 ............................. CGTGCTCAAGCCTTGCAGAAAGTCTTGCACAA 38882 29 100.0 32 ............................. GTCGAGATCTTGCATGATTGGCAGCAGATTCT 38821 29 100.0 32 ............................. CGGCTGTGGCCGCAGATGGCCGACTCGGGCAA 38760 29 100.0 32 ............................. GAAACCGTCCAAAAAAACGGTGGCAAAACAAC 38699 29 100.0 32 ............................. ACATCCCAGTCCAATTGTGGCCGATGGACGTA 38638 29 100.0 32 ............................. AACGGCCCGTGCGAAAGCCTCGAAGCGTTCTG 38577 29 100.0 32 ............................. CAACCATCTACAGGGACATTGTAACTGGCTCA 38516 29 100.0 32 ............................. GTCTTACCGAGACCACGCGCACTGATAATGAA 38455 29 100.0 32 ............................. ACGGATAACAACGGCGATATGGTAACGGTGCT 38394 29 93.1 32 ...T.........G............... ACTTAAATTTGGACGTCAGGCGCCCAGATTGT 38333 29 89.7 166 ...T......T.....T............ AACGGCACGAAACACATATCCGCGAGTTATGGGTGCTCGACATATCGGGACTGCATCAGATCCAACTGAAATAGAAAGCCCGAAGATAACCCCCCGACTGATGTTCCAGTCTTGAAAGCTGGTCGCGTGGGATCTTCGAGCAATCCAATTCTACCACCACGGCACC T [38306] 38137 29 89.7 32 ...T...............A....G.... CACGACATGCAGGACTACCAGCCACTCGGCAG 38076 28 93.1 32 ...-.......G................. GCGCTCGAAAACAAGCTGCGCCAGCGTTTCAA T [38069] 38015 29 86.2 0 ...T......................TGT | ========== ====== ====== ====== ============================= ====================================================================================================================================================================== ================== 20 29 97.6 39 GTGCTCCCCGCACATGCGGGGATGATCCC # Left flank : CCCTGGATGGTCTTGTTGCCGTCGG # Right flank : ATTTGTCAATCTATCAGTCGCATCGCATGTGCGTTAGCTACACTTATCCGCATAAGTGTAGCTAACGTTAAAATAAGCTACATTTATCTCGATAAGTGTTGCTTACGAGAGTTTTTGCGATGGATAATAATTTCGGCCATTTCGATATACATGAATCCGTAGGGGCCACAACGACTTGTGTTTCCGATTTACAAGCGTGGCTTTGCTTAAGAACGTGATTTTGTCCGGGGAACGATGCGCTTGACACATACTGGCACTACCAACGGAGGAGCACCATGAAATACGAGATTGCGATTTGCAAAAGTATGAAACGTAAGAAAGGACGCAGTCGCGCTTCGATATGTTTTTGATTGCGTAACGGCGCGACGGCATCGCTTTTGCGCATGTCGGGCGCTTCGTTGCCGCAACCGGCGTAAGATATCTGCGAATGTCAAACATAAGCGAGATATCTGAAGGAGAGAAGATGTCAACAAACGAAGCAGCATTGCCGCAGTCGACGG # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.65, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //