Array 1 109860-110089 **** Predicted by CRISPRDetect 2.4 *** >NC_014122.1 Methanocaldococcus infernus ME, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 109860 30 100.0 37 .............................. AGTAGTTGAGCACAGATTTCTCTGTGAATAACATCAA 109927 30 100.0 35 .............................. CATTTACATTTTGCATTTCTTATCATGCACAACTC 109992 30 100.0 38 .............................. GGTTAATCTATAATGCACAAACAAAAACATTAGGAGAA 110060 30 70.0 0 ............T.......A..AAATTTT | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 92.5 37 GTAAAATAACGCCCCTAAGGGGATGGAAAC # Left flank : GATCTCTTTAACTAAGATCTCATAAGCCTTAGCCACAGAAGGAGCTTTTATAAACATTTGGTGATCACTTTTTATTTTTTGGTGTGGGATTGTTATTTCTTTTAACTTATTTATTCTTATTGGTTTTTAGGTTTTATCTTGTTTGAAGTTCTTGTTTTTAGGTTTTTGTTGTTTTTAGGTGGGATTTTTTGATTTTTATTTGGTTTTTAGTTGGCTTCGGAGGGTGGCATGATATTATTAATTTGAATATTCGGTTTTTATGAATTATTGGGATTTTTTAGTTTTTTAGGTTATTTGTTTTTAGAATTTTATTTTCCCTTTGGAAATTTCGTTTTTAGTTTAAAGGTTTTGGTTTTATTTGAGTATTAAAGAAAGTAAGGATTTTTATCAAACTTCGGATCTTTTTAAATAAATAGAAGAACCTAACCTTCAGCCTGTTGGTTAGGATAAAGCTTATATACTATAAGAGCGAATGTTATAAACAAGCAAAATTTTGCCTT # Right flank : TTATTATAATTTTACAATAAAAGCTTGTAACATATTTAAACAGTGCTGAGCATGAAAGTTAGAGAGATCAACAAAAAAGAGAAAGAAGAGATATTCAAAGAGATATATAGATACTGTAAAGACTATGCTTATAAATTTGATTATTCTAAGCTATATGCTCTTAAAGGGAATTGGGTTACAGTGTGTTATTCAAACACCAAGCCCTTGGTTGAAGATCTCTACTCTATAGGTAATGTCTTTGGAGAGTTCAGGAGAAAGTTTAAGTTATCCTTGGAAGGCTTTACCTTACTCTCAAATAATATAGTAAATAACTACTGTATAGTTAATGAGAAAGCTGAATCTCTATTTTTGTATGGTAGAGATATCTTTAAAAGCTCTATCTTAGAAATAAAAGGCTCTGGGAGATTGGCTATATTCAACAAAAATAGAGAATTCTTAGGGGTTGGTTATAAGGAGAAAGACATCATCAAAAATATAAAAGATAAGGGATGGTATTTAAG # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAATAACGCCCCTAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 236384-235757 **** Predicted by CRISPRDetect 2.4 *** >NC_014122.1 Methanocaldococcus infernus ME, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 236383 30 100.0 36 .............................. ATATGCAATTAAGTTAGCATCACAAAAAAGATTAAA 236317 30 100.0 35 .............................. GCAGTGATTGAAATTTCAAATATAACTGAAAATTC 236252 30 100.0 38 .............................. GAACCAAGCTGAGCCTTTAATGCTTCAGAAGTCTCCAG 236184 30 100.0 33 .............................. TTATTTTAGGCAGTTCATCATATAATGTCTTAA 236121 30 100.0 38 .............................. ATAAACCCATCAGGTAGTTTTATTCTGAATATCACATC 236053 30 100.0 35 .............................. ATTCTATTATTGCTCTATTTCTGAATTCGTTCAAA 235988 30 100.0 37 .............................. TCTTTTCTTTCCGTAGATGATAACACTTTTAAATTCT 235921 30 100.0 42 .............................. CACATAATCGCATATAAATCCATTTTCTTTAACCCTAATAAA 235849 30 96.7 35 ................T............. GAGAAGTGTTTCGTCAATAGTAGTAATTTAGGCAA 235784 28 90.0 0 ................T.......--.... | ========== ====== ====== ====== ============================== ========================================== ================== 10 30 98.7 37 GTAAAATAACGCCCCTAAGGGGATGGAAAC # Left flank : GAAAAAAGAGAAAGAAGCTTCAAAAGAAGATAAGAAAGAGAAGAAAAAGCAGTTAACATTAGATGCTTTCTTTTGAATAAAGTGGCTTGATGATTTTTATCTTAGTTTTATTTATTCTTATTGGTTTTTAGGTTGTGTCTTGTTTGAAGTTCTTGTTTTTAGGTTTTTGTTGTTTTTAGGTGGGATTTTTTGATTTTTATTTGGTTTTTAATTAGCTTCGGAGGGTAGCTTAATGTTATTAATTTGAATATTCGGTTTTTGTGAATTATTGGGCTTTTTTAGTTTTTTGGGTTATTTATTTTTAGAATTTTATTTTCCCTTTGGAAATTTTGTTTTTGGTTTTGAGGTTTGGTTTTATTTTAGTATTAAGGAAAGTAAAGGTTTTTATCAAACTTCAGATCTTTTTAAATAAATGGGAGAACCTAACCTTCAGCCTGTTGGTTAGGATAAAGCTTATATACTATAAGAGCGAATGTTATAAATAAGCAAAATTTTGCCTT # Right flank : ACTCTAATCACTATTTTACCCAACTATATTTATATATTTAAATATATAAAATCAAATTTTCAAAAATAAGATATAAATAAACCTAATAGCCATTATATAAAGTTATATAAACAAGAACCGGACACCATAATATAATATAGATTACGAATTTCGTGAAAATATGAGAATCTGTATAGTGACTTGGGAATATCCACCTAACATAGTAGGGGGTTTATCCATACACTGTAAGGGGTTAGCTGAGGCTTTAGCTAAGATTGGGGAAGAGGTTGATGTTATCACTGTGGGTGATAGGGATGAAGTTATAAATGGAGTTAACATATATAGAGTTTCTCCTCCTTACCATAGCCACTTTCTAACAAGAATTTTACTGATGGCTGAAGAGCTTGAGAAAAAGGTAGGAATTGTTGATAAGGACTATGATGTTATTCACTGTCATGACTGGATGACACACTTTGTAGGGGCTAACTTAAAGCATAATAGGAAGATAGCTTATGTTCAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAATAACGCCCCTAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 247617-245939 **** Predicted by CRISPRDetect 2.4 *** >NC_014122.1 Methanocaldococcus infernus ME, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 247616 37 97.3 34 .A................................... TTGATGAATTCATAAATATAGATGTGATAGTTAG 247545 37 100.0 42 ..................................... TATAATCTTTAATTTCGTTATTAAAAAAGTTCTCAAAAGTAA 247466 37 100.0 42 ..................................... TATAATCTTTAATTTCGTTATTAAAAAAGTTCTCAAAAGTAA 247387 37 100.0 38 ..................................... TTCTCCAATTGATTTAATGCTAACGTTGGAAACTTTAC 247312 37 100.0 35 ..................................... AAGGCAATAATAGAAGCATCAATAAATTTGATTTA 247240 37 100.0 38 ..................................... TCTCTAAAATTGACATTAGAAAAGCTCAAAGAAGAGCT 247165 37 100.0 37 ..................................... ACTTCAATGCTGAAAATTTAGAAAAGAAATTCTTGCT 247091 37 100.0 36 ..................................... AAGGAATGGCTGGAAGAGGTTTTATTATGAATGTTT 247018 37 100.0 39 ..................................... ATATTGAAGATATTATAAGATCTGGAAAAGATGAACTCA 246942 37 100.0 37 ..................................... TGGCTTGGCTTACTGCTGTTGTAAAATACCCGTAATT 246868 37 100.0 34 ..................................... TTGCAATATCTCAGAAAAAAAGGACTGATAACAG 246797 37 100.0 38 ..................................... ACAATTTCAGGACATTCCTGCTCTTTACCATCTATACT 246722 37 100.0 34 ..................................... TTTTGTCGGTTAATTACTTAGCGGTTATAGTATA 246651 37 100.0 50 ..................................... TATATCTTATGACTATCGTATGTATCTAATGATAATTTACAGTATTTACA 246564 37 100.0 38 ..................................... TACCCCACACTTAGTCGATGTGATAATTGATTTGGGGT 246489 37 100.0 39 ..................................... CAGTTGGGGATTTGGGTATCAGTTTGAGTATGAGGGAAA 246413 37 100.0 35 ..................................... CAGAAACTCTTGAAGTTACTTGAGAAAAGTGAACA 246341 37 100.0 38 ..................................... TACCCCACACTTAGTCGATGTGATAATTGATTTGGGGT 246266 37 100.0 35 ..................................... TTATATATATAGTTGGGAATTAGCAAGAAACGACT 246194 37 100.0 37 ..................................... TATCATACTACGCAAAAGATATATTAGAAGATAAATT 246120 37 100.0 35 ..................................... TGTATCTCCACATACATCTTACAAAGAATCACTGA 246048 37 100.0 36 ..................................... ACGCGTTTAAAACCATTTGTGACCTTGGAGAATTTA 245975 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================== ================== 23 37 99.9 38 GTTTCCATCCTTGTTTTAATGGACTGGCGATTCAAAC # Left flank : CTTAGTATCTAATGGAATATTGACAGAGGTTATTAAGAAGATTAAGCCTACTCAACTTTATATCTCCTTAGATGCCTATGACTTAGAAAGCTATAAAAAAATTTGTAGAGGAAAGGAAGAGTTTTGGGAGCACATCTTAGAGACTTTAAATATCTTAGATAAAAAGGAGAGAAGTTGTATAAGAACCACTTTAGTTAGGAACTATAATACTAATATAGAAAAGTTTATTCCCCTCTATGAGTTGGCAAATGTTGATTTTATTGAGCTGAAGTCATATATGCATGTTGGATACTCACAGAGAAGATTAAAAAAGGAGCATATGCTTAGTTATGATGAAATCTTAAAGTTAGCTAAGAAAGTTGAGGAGAATAGTAGATATAAAATAGCTGATGGCTGTGAGGAAAGTAGGGTTGTTCTACTGGTGAATAAGGATAAGGATGTTAGTGTGAAGATTTAAGTTTTTATTTTTTATGTTATTAATAGATTTGGATTTATTTGTA # Right flank : CCTTAATGTCTGTCCTTATTTTATATCAAAACTCCTATAAAAAACTTTCTTTTTAAACCCGAGTTTTCTTACTGGTTGATTATTGAACCCCTATATAAAAGTAAGAAAGATTGTTCCCTCCATTTAAAAATACTATGCACAACCGTTAAAACAAAGCTCAACAATTAACCCATATTTCACTAAAAATAAAGTCTAATTAAACCTAAAACCAATAAAATAACAGCAAACAATCCAACAAACTAAAAAATCACAATTCTCCAACGAAAAAATCAGTATTACTTTTTCCCAATTTTCTCGTACCAATTTCCAACAACCTCTATATAAAAGCAAGAAAACTTAATTAGGAAAGTTAATAACCACAATAAACTTATTAATAACAAAAAACCCTTTTGATGAAACTTTTTCTAAAAGTTTATAATTAATAACAAAAATAAAAACTCATCAAGCTAACTCTTTTGATGAAACTTTTTCTAAAAGTTTCAGATGGAGCTTTTTCTAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGACTGGCGATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 4 531383-532158 **** Predicted by CRISPRDetect 2.4 *** >NC_014122.1 Methanocaldococcus infernus ME, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 531383 37 100.0 38 ..................................... AGGGTGAAACCAGTTGCTGGAATGTTCGACTATGACAT 531458 37 100.0 35 ..................................... CTAAGCTCTCTTCTCTCTAACTTGAGAAATAAAGC 531530 37 100.0 38 ..................................... GTGATAGAAACATCTTTTTTATGAATTGTTTGATTGTA 531605 37 100.0 36 ..................................... CATTTTGGAGCCATAGGGATAATATGGAGCTTACAA 531678 37 100.0 36 ..................................... ATGAAGATTGGCAAATGATTAGGCTATTATTCAAGG 531751 37 100.0 38 ..................................... TGTTCCAAACACAGATGAGTGGTTAGATTGGGCTATCA 531826 37 100.0 37 ..................................... GAAAATCTCTTAAAATACTTAATGAAAATGAAAATCT 531900 37 100.0 35 ..................................... ACACAACAACTTTACGACTTCCTGAAGTGTTTACA 531972 37 100.0 40 ..................................... AGTGCAGATGAAATACAAACTAGAAGAAAACCATTGAAGA 532049 37 100.0 36 ..................................... TTTTAGACAAACTAAAGAAATGGGGGCTAATAGAAA 532122 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 100.0 37 GTTTCCATCCTTGTTTTAATGGACTGGCGATTCAAAC # Left flank : TGGCCTTCCTACTTCCAGTTAGAGCATTTATTATAGAGGATTTCCCAACATTTGGATAACCAATGATTCCAACATTAACCTTTTCCTTGTTTAAGCTCTTAGCAATCTCTTTAATTTTATCTCTTAGAATTTTTGTTCCTAACCTTCTCTTAGCTGAGAGGTAAACAACCTCACCAGGGAGTAAAGATTTCCACTTCTCTAAAATTTCTTTTGGAACCAAATCAGCTTTATTTAGTACATAGATAACTTTTTTTCCTTTTTTCCTAATTTTTTCTTCTATTTCCCTATTCCTTGTTAGTTCTGGATCCCTTGCATCTAAGACTAAGAGGATGATGTCACATTCATCAATAACTTTATTAACTATCTTCTTAACTGGAACCTTCTTTCCCATCTTTTTATTCACCATCTTTTTTAAAGCTTTATTAGGCTTTTATGTAGTATAAGTTTTTTTATTGGTTTATTTTTATGTATGGATTTTAGGTTAAATAAAAATAATATTA # Right flank : CCCTTAATGTCTGCTCTTATTTTATATCGAAACTCCTATAAAAAACTTTCTTTTTTAACCTGAGTTTTCTTACTGGTTGATTATTGAACCCCTATATAAAAGTAAGAAAGATTGTTTCCTCCATTTAAAAATACTATGCACAACCATTAAAACAAAGCTCAACAATTAACCCTTATTTCACTAAAAATAAAGTCTAATTAAACCTAAAATATATAAAATAACAGCAAATAAACCAAAAAACTAAAAAATCACAATTCTCCAACGAAAAAATCAGTATTACTTTTCCACAATTTTCTCGTACCAATTTCCAACAACCCCTATATAAAAGCAAGAAAACTTAATTAAAAACTTTAATAGCGATATCTAAATAACTAATAACAAAAAACTCTTTTTGATAAAACTTTTTTTAAAAGTTTATAATTAATAACAAAAATAAAAACTCATCAAGCTAACTCTTTTGATGAAACTTTTTTTAAAAGTTTCTTTTAAAAGTTTCCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGACTGGCGATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 5 604543-605764 **** Predicted by CRISPRDetect 2.4 *** >NC_014122.1 Methanocaldococcus infernus ME, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 604543 37 100.0 37 ..................................... TCAAGCCGTCCTCAATTTTTATTTTTTGATCAACAAT 604617 37 100.0 36 ..................................... GATACTCAAGAGAACTATATCTTGAATATGAGAAAG 604690 37 100.0 36 ..................................... TTCTGGTAAGTCTTCTAATTCATTAATTATCTTTTC 604763 37 100.0 33 ..................................... CAGGGCTATTACAGTTCCTACAGCTCTATCTAT 604833 37 100.0 36 ..................................... ATAAAGAGAAAACATGAAGAGATTAAAGAAACAAAG 604906 37 100.0 41 ..................................... TGATACCCCTAAAAGAGTATTCCTAAGAAAAATAAGAAGAT 604984 37 100.0 36 ..................................... TGAAAAGGCATTAATGAGTAGAATTATTCAATATAC 605057 37 100.0 36 ..................................... AAATGAATGAAATAGAATTAAGTGGGGGCATAAAAA 605130 37 100.0 47 ..................................... AATGTATAGAGGAAAATTTGGTGTTAGTGGGTCAATGACAGTGTTGG 605214 37 100.0 36 ..................................... AATCCGGGGAGTATCGTCCAATATCCAGAACAGGAT 605287 37 100.0 38 ..................................... GGAAAAAATAGAATGGTTAGAAAAAGAACAAGAAGAGA 605362 37 100.0 38 ..................................... AAATGGTGATCCAATCACATACATAGATGAGTATAGCA 605437 37 100.0 34 ..................................... TTATTATATGAAATAATAAGTGAAGTTGAAAAAT 605508 37 100.0 36 ..................................... GTGTTTTGTGGAAAGTGACAAATGATTCAGAATATT 605581 37 100.0 37 ..................................... GACAGAGGGGAAGACTACTACGACATGTTGCCAAAAG 605655 37 100.0 36 ..................................... GACAAAAAAGAAGTTTGAAGAGACAAGAGAAATTTT 605728 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 17 37 100.0 37 GTTTCCATCCTTGTTTTAATGGACTGGTGATTCAAAC # Left flank : GGAGATACTATGATAGGTATAACAGAGATGTACAAAGATATTGGTGAGATGATAGGAGTTAAGTATAGAGTGGTTAACCCCTACAAGGAAAAGGTGAATTGCTCTATTTTAATAATTTCTAAGGGTTATAAGGAGAGAGTTAAAAAGTTAAATCCTGAGGCTAAGATATTTGAGGTTAGAGCAGCAACTTTTAGAGATTTAATAGAAAGCTTGGAAATGCTAAAAGAGATAGGGGATGAGAAAAAAATTGAAGAAAGTATAAGAAAAATAAGGGAGAGGGAAAGAGAAGTTAAAAAGCTCTTAAAAAGAAAAGCTAAAGTTAATCCAAAGTCTAAATTTTTGGAAAGAATAGCTTTAGATCTAAATTTAGAAATCTCTGAGGATGGGATTGAGTTAGTGCCAGACTACTTAGGGGGGAATATAAGAACTCATAGATATGACTTAGGACTAATTGAAAGAATTGAGGATAGATATAGGCAAGTTATTGAAATCATTAATTC # Right flank : CCCTTAATGTCTGCCCTTATTTTATATCAAAACTCCTATAAAAAACTTTCTTTTTAAACCCGAGTTTTCTTACTGGTTGGTTATTGAACCCCTATATAAAAGTAAGAAAGATTGTTCCCTCCATTTAAAAATACTATGCACAACCGTTAAAACAAAGCTCAACAATTAACCCATATTTCACTAAAAATAAAGTCTAACTAAACCTAAAACCTACAAAATAACAGCAAACAAGCCAAAAAACTAAAAAATCACAATTCTCCAACGAAAAAATCAGTATTACTTTTTCCCAATTTTCTCGTACCAATTTCCAACAACCCCTATATAAAAGCAAGAAAACTTAATTAAAAACATTAATAACGATATCTAAATAACTAATAACAAAAAAATAAAAACCCATCAAACTAATTCCTTTTGATGAAACTTTTTCTAAAAGTTTCAAAGAAAAACTTAATTAAAAACTTTAATAACCACAATAAACTTATTAATAACAAAAAATAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGACTGGTGATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 6 715926-716368 **** Predicted by CRISPRDetect 2.4 *** >NC_014122.1 Methanocaldococcus infernus ME, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 715926 30 100.0 38 .............................. TTTTGTTAGAGCATTTAAAGGAGACATACTATTACGAT 715994 30 100.0 43 .............................. TAATGTAATATTGGATTTGTCAGTTGTTGAGAAGCTAAAATTT 716067 30 100.0 41 .............................. TATTTAAATTTTTCAATTGATAACTTTTGAATAAATCCAAA 716138 30 100.0 38 .............................. TTACCACCCATTTATTGTTTTGTCGGTTAATTACTTAG 716206 30 100.0 35 .............................. CTTTATAAGTTAAAAAATAAAGAATACTACTTTAT 716271 30 96.7 38 ................A............. AAGTTCATTAAAAACCATAGAAATTAGAATATTTAATT 716339 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 7 30 99.5 39 GTTTCCATCCCCTTAGGGGCGTTATTTTAC # Left flank : CCAAGAGGAAAAATAGTTGAAAAGAAGCTAACCGGTCCTCATTAGAGGTTCCCGGTTAGCAATCTCTACTGTTACCAACTTTTAAGTACTTACCAAATAAGCTTCTTTTAAGCTCTATCTTTACACTACTAAGCCATTGCTGAGCCACTTTATCTAAGAAGATTTTAAATTCATTGTCATAAATTAACTTATCATCTTCCTTAGGCTCAGCAATGGCTACCCCAAACCTTGGGCCACATCATCCAAAGCCATCAAAGTAAATTATTACACTATCTGAACCTTTTTTCTTTAACTTCTCCAAGATGAAATTTTTAGCATCATTACTTATCTCAACCTTCATCTTTTACCACCTCTACGTATTAACTTAGCATTTCTTATATATTAAGTTTATGGTTGTGGCAATATTATGAACATATATTAAGAAAATTAATAATTATGGACATTGATGTGGTTTTTATTTGAGTTTATTAATTTATATGTTAGAGTGTAACTTTCAGATT # Right flank : CAAGGCAAAATTTTGCTTGTTTATATCATTTGCTCTTATAGTATATAAGCTTTATCCCTAATCAACAGACTGAAGGTTAGGTTCTTCTATTTATCTAAAAAGATCCGAAGTTTGATAAAAACCTTTACTTTCCTTAATACTAAAATAAAACCAAACCTCTAAACCAAAAACGAAATTTCCAAAGGGAAAATAAAATTCTAAAAATAAATAACCCAAAAAACTAAAAAAGCCCAATAATTCACAAAAACCGAATATTCAAATTAATAACATTAAGCTACCCTCCGAAGCCAACTAAAAACCAAATAAAAACCAACAAAATCATCTAAAAACAACAAAAACCTAAAAACAAAAACTTTAAACAAGATAAAACTCTAAAATAACCTAAAATAAATTATAAACATTCACACCTAAAAGAGTAAAAAAAATCTGAATAAAATTAGTTAAAAAAAATATAGAATAGAACTTACCCAAACATTCAAAAAAACTTAAGGCTGGAACTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCTTAGGGGCGTTATTTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 7 767940-768494 **** Predicted by CRISPRDetect 2.4 *** >NC_014122.1 Methanocaldococcus infernus ME, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 767940 37 100.0 35 ..................................... ATAAATAGATTAAAGGGGCTGGGATTGATTGATAG 768012 37 100.0 37 ..................................... GAAATAATTACCCATTACTTCCTTAAAAAAGCTTAAC 768086 37 100.0 37 ..................................... AGCTATGTTAGGGTATTTGTACTCCAGTAGTCTGAGC 768160 37 100.0 38 ..................................... AGGATCAGTATGTCTGGTCTATATAGTTCAAGAATTTT 768235 37 100.0 36 ..................................... GTGGGTTTGGAGTAACTACTCATTCATGATCACCTC 768308 37 100.0 40 ..................................... TTGTTTTTTGTATCTATTGATATGAATACTCCAGTTCCAT 768385 37 100.0 35 ..................................... CCTCCTTTAGTTTTTCTACGTAAACCTCTTTGAGC 768457 37 94.6 0 ................................A...T | T [768491] ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 99.3 37 GTTTGAATCACCAGTCCATTAAAACAAGGATGGAAAC # Left flank : TTGATGGGTTTTTATTTTTTGTTATTAGTTATTTGGATATCGTTATTAATGTTTTTAATTAAGTTTTTCTTTGAAACTTTTAGGAAAAGTTTCATCAAAAGGGTTTAGCTTGATGAGTTTTTGTTATTAGTTATTTGGATATCGTTATTAACGTTTTTAATTAAGTTTTCTTGCTTTTATATAGGGGTTGTTGGAAATTGGTACGAGAAAATTGGGAAAAAGTAATACTGATTTTTTCGTTGGAGAATTGTGATTTTTTAGTTTGTTGGATTGTTTGCTGTTATTTTATTGGTTTTAGGTTTAATTAGACTTTATTTTTAGTGAAATAAGGGTTAATTGCTGAGCTTTGTTTTAACGGTTGTGCATAGTATTTTTAAATGGAGGGAACAATCTTTCTTACTTTTATATAGGGGTTCAATAACCAACCAGTAAGAAAACTCGGGTTTAAAAAGAAAGTTTTTTATAGGAGTTTCGATATAAAATAAGAGCAGACATTAAGG # Right flank : TAAAACAAAAAAATCATAAAACTCTTTTTTCAATAAATTTCAAAGCTAATAAGCTAAGGATGAAAGATATTAAAGAAGAGACTAATTCTCCAAGTATCAATCCAATAAAGATAAAGAACAGGTTAATAGCTAAGAGATATGGGAAAATTACTCTTAAAAAGTTCCTAAGCAAGGATAGAAAGAAAGCTTTTTCTCCCTCACCTATTCCCTGATATAAAGAGGTTGAGATAAAGAAGGGAGGCATAAATAGGAGATAGAGGGAAGCTATTTTTATATAAAAAACTAAATCTTTGTATATATTAGAGTTTTCAAATGTGAAGAGTAGAGCTAAGTAAGGGGATAAGATAATTAAGAGAACAACTATAAGAGCTTCCATAGCTAACCCTAACTTTATAGAAAAAAAGTAAGCCTCTTTTAGCCTTTTAATATCCTTAGCTCCATAATAGGCCCCTATAACTGATGTAGCCCCACTGGCTAAGCCAATGATTGGGATGAAGCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCACCAGTCCATTAAAACAAGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 8 826803-825945 **** Predicted by CRISPRDetect 2.4 *** >NC_014122.1 Methanocaldococcus infernus ME, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 826802 30 96.7 35 ................T............. TTCAGAGTTTAAAAGGTTCATTAGGGTATCAAGTA 826737 30 100.0 36 .............................. CAGGATGATGGAAGATCAGAGGGTGAGAGAGTTCCT 826671 30 100.0 39 .............................. GTGCAACGTGCTCTTCCACATAGCGAATGAGAGTTTGGA 826602 30 100.0 38 .............................. AAGACATCGTGTTTCACAACTTTCATTACGACGGGTTC 826534 30 100.0 40 .............................. TGAAACAAAGACTGAAGAACCTCAGCCTCTTCTTTTGTGT 826464 30 100.0 40 .............................. GGAGCAGAGACTCTTTTCTGAACTCCTGTTCCTAATAACT 826394 30 100.0 43 .............................. AATCTCCCTTCCTATTTCTATGACTTTTACCCCTTCCTTATTT 826321 30 100.0 36 .............................. AACGGCATTGAAGTCATCTACTGTCAATTGCTTTAA 826255 30 100.0 36 .............................. GAAATAACTTGTAAAGGTAAATTACTTTCAATTTTC 826189 30 96.7 43 .......................G...... CATCTTTCCACCTTAGCCTTTCGTCTTTTTCAAAAATGCTCCC 826116 30 96.7 40 ................T............. ATCTCTGAAATAATTAAATGCTTCTTTCTCCATCAAATCA 826046 30 96.7 41 ............................G. TCTATTACTATCAAACATCTTTTGGATTTTATCACAATGAC 825975 30 80.0 0 ...................AA..A.T.G.A | T [825956] ========== ====== ====== ====== ============================== =========================================== ================== 13 30 97.4 39 GTAAAATAACGCCCCTAAGGGGATGGAAAC # Left flank : TTAGTAATAGTATAGCTGACAAGCCAGCATCAGCAAAGGGATGCCCTGTCCAATAGAATGTTTTATTTCCCATATTTACACCAAGTATAATATTGGTAATTTATATGTAGATTTTGGGATTTATTTATTTTTCGGTTACTTGTTTAACGTTTTTGTTTTTAGGTTTTTGTTGTTTTTAGGTGGGATTTTTTGATTTTTGTGAGTTTTTAGTTGGCTTCGGAGGGTAGCTTAATGTTATTAATTTGAATATTCGGTTTTTATGAATTATTGTGATTTTTTAGTTTTTTAGGTTATTTGCTTTTAGAATTTTATTTTCCCTTTGGAAATTTTGTTTTTGGTTTCAAGGTTTGGTTTTATTTTAGTATTAAAGAAAGTAAAGGTTTTTATCAAACTTCGGATCTTTTTAAATAAATGGGAGAACCTAACCTTCATCCCGTTGATTAGGGATAAAGCTTATATACTATAAGAGCGAATGTTATAAACAAGCAAAATTTTGCCTT # Right flank : ATAAAATAAACATCACAAAAAATAGTTTTTAACAGAAACAACTAAAAGTTTAACATAAAAAAGGGTCAGTGAAGGGCGTGATCATCACAAAATCAGAACATCGATGTATCATCATCCCCTTTTTTTAAGCTTATTCTAAAGTTTTTAAAACCTCTAAGCCAAAAACCCTCGCATAGTCGGGAGATTTTGCAGTGACTATTTTATCAACTCTAACTACTCCCTTATCAACATACTTAACTCCATACTTTTTAAACTCCTCCAAGGCTTCCTTAGCTGGAAAAACTGTAGCTTCCTTACCCTTTAAAATCCCAGCCTCTGCTAAGACAACAGGAGACAAGCAGATAGCTGCTACAGTCTTATTTTCCTCATAGAATTCTTTAACAAGGTTAATTAGTTTTTCATTATGCCATAAGTACTTTGGAGACCCTGTACCTCCAATAATTACTATAGCCACATAGTTTTTAGGATCAACCTCATCTATTGTTAAATTTACCTTAACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAATAACGCCCCTAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 9 834710-835081 **** Predicted by CRISPRDetect 2.4 *** >NC_014122.1 Methanocaldococcus infernus ME, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 834710 29 100.0 39 ............................. CTTCATCTCTGGTCTTCTCAACATGCAAAATGTGGAATT 834778 29 96.6 39 .C........................... CATGCTCCCCATCTCCACAATCATCTCTAACCTTTTCTA 834846 29 100.0 39 ............................. CGACAAAATTTAACCTGTTTATAATATCTGTTGTTTTCC 834914 29 100.0 40 ............................. CAACTGATGTGAAGTTAGTATCATTTACACTTATTGATGC 834983 29 100.0 41 ............................. TTCAGAAATTTCAAATCTAAGTTCTACTGTCTTATTTTCAT 835053 29 82.8 0 .............T....A...T.AA... | ========== ====== ====== ====== ============================= ========================================= ================== 6 29 96.6 40 GTAAAATAACGCCCCTAAGGGGATGGAAA # Left flank : AAACTTTTTACTTTATTAACTCTTTTTACATTTACATCATATACAATTATGATATACATTTAGAATCACTATAGTGGAGCTTATTTTGAGTTATTTTTGTAATTAGTTTTATTTATTTTTATTGGTTTTTAGGTTGTGTCTCGTTTAAAGTTTTTGTTTTTAGGTTTTTGTTGTTTTTGTATGAGTTTTTTGGTTTTTATTTGGTTTTTAGTTGGCTTCGGAGGGTAGCTTAATGTTATTAATTTGAATATTCGGTTTTTATGAATTATTGGGATTTTTTAGTTTTTTAATTTATTTATTTTTAGAATTTTGTTTTCCCTTTGGAAATTTCGTTTTTAGTTTAAAGGTTTGGTTTTATTTGAGTATTATGGAAAATAAGGATTTTTATTAAACTTCAGATCTTTTTAAATAAATAGAAGAACCTAACCTTCATCCCGTTGATTAGGGATAAAGCTTATATACTATAAGAGCGTACGATATAAACAAGCAAAATTTTGCCT # Right flank : ATAAACTAAATTTAGATACAGATATATTCATAAACCTAAATATTCAAATAAAGCAGAAACAAAGATATAAAAAGATTATTAAAAATATTATAACATTTAAAAAATCCTAAAAAGGTGAAACTTTCTATGAAATTTGGGTGGGTTTGTGCTGCTGATAGGGATAGTTGGGAAGATAGGAAAGAGATAGTAAAGATGGCTTTAGAAAGTTCTATCCCTGTTGTGGTTGTTAGGCCAGAGGATATAGAGAAGGTTAGAGAATTAGGAAATATAAAAGTGGCTTCACATAGCTTAGATGCTGACATAGTCTTAATTAGTAAGAATGATGACATAGAGTTCTTAAAGGAGGCTAAAGAAAAGGGAAAGGAAACAGCTATCTATATCCCAATAGAGTCTAAGGAAGATGAAGAGTTTGCCTCAGAGGTTGCAAGGTTTGGATTTGTTGATTATATAGTTATTGAGGGAAGGGATTGGACAATCATCCCACTTGAGAACTTAATAGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAATAACGCCCCTAAGGGGATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 10 885289-886549 **** Predicted by CRISPRDetect 2.4 *** >NC_014122.1 Methanocaldococcus infernus ME, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 885289 30 90.0 39 ............T...T............T TTAAGCTCGAGATGCAAATCATAATCACAACCAGTTTCC 885358 30 100.0 42 .............................. GAAAGTATAAGGAATTGAATGATGAAGATAGAAAAAAGATTT 885430 30 100.0 31 .............................. GTATCTATCTCAATCTCATCCTCATCTAAAA 885491 30 100.0 42 .............................. CTTTTGTGAATTTTGAATAATCGTTTAAAATGCTCTCTATAA 885563 30 100.0 38 .............................. TATAACCAATCCAAAATAGCACTATTGATAATAGTATA 885631 30 100.0 42 .............................. GGATATGAGCGTTTCTCCTCTTGGTAATTGCATCAAGTCCGA 885703 30 100.0 35 .............................. TCAATATCAATTTTCTTATGAATTATTACATTCGG 885768 30 96.7 42 ..........A................... TTTATATACGTATTTTTTTCTTAATAAATTTATCCAGTAAAA 885840 30 100.0 38 .............................. GTGATTCTGATGATCTTTCCACCAAGTTTTACATCTAG 885908 30 100.0 41 .............................. GCTCTCTACATAATGGACAAGATTGCATTCACAAGAGCAAG 885979 30 100.0 40 .............................. AGGGCAGCCCCAGGCTGCCCCTCATGGGAGAGCCTCCTCC 886049 30 100.0 35 .............................. AAAGATAAGAGGGAGGAACTCAAGCCCTCCCCCTT 886114 30 100.0 39 .............................. ATAAATGGCGCTAATATTGATGTTGCAATTGTTTTTTTA 886183 30 100.0 37 .............................. TATCTAATGACTAACGCGGATAATCCTCCCAACACTA 886250 30 100.0 37 .............................. TATCTAATGACTAACGCGGATAATCCTCCCAACACTA 886317 30 100.0 38 .............................. TATTATCTATTTTATACTTGCTAATCTTAATATACCTT 886385 30 100.0 38 .............................. TATTATCTATTTTATACTTGCTAATCTTAATATACCTT 886453 30 100.0 37 .............................. CAAATATCGTTTTTTTTTACTTCAACTTTTGTTATAA 886520 30 70.0 0 .C........A..AT.....A..CTA...T | ========== ====== ====== ====== ============================== ========================================== ================== 19 30 97.7 38 GTAAAATAACGCCCCTAAGGGGATGGAAAC # Left flank : AATTTTTATGTAAGTAGTATATAAAGCTTTCTCCTAAAACCTTTAGAAGAAACTTTTAGAAAAAGTTTCATCAAAAAATTTAGAAAGTTTGATGATTTTTATATAATGTCTTATTTTTTATTTTTGTTTGGGTTGTATCACGTTTAAAATTCTTATTTTTAGGTTTTTGTTGTTTTCGTGTGAGTTTTTTGATTTTTATTTGGTTTTTAGTTGGCTTCGGAGGGTAGCTTAATGTTATTAATTTGAATATTCGGTTTTTATGAATTATTGAGATTTTTTAGTTTTTTAGGTTATTTATTTTTAGAATTTTATTTTCCCTTTGGAAATTTTGTTTTTGGTTTAAAGGTTTAATTTTATTTTAGTATTAAGGAAAGTAAGTATTTTTATCAAACTTCGGATCTTTTTAAATAAATAGGAAAACCTAACCTTCATCCAGTTGATTAGGGATAAAGCTTATATACTATAAGAGCGAATGTTATAAACAAGCAAAATTTTGCTTT # Right flank : TAGCTCTTCTAAACACTTCAAAATTCTCTTATATTGTTCATCCAAGTATAAAAATTTATCAACATCTTCTTTATCAGCTTTTTTAAGAAACTCCTCTTTCTCTTTACATCCCCATTTTTCAAATAACTTTTTTATATCAGCTTCAATATTTTTTAACTCTTCAGTAAGGACTTTTTTCATAGACATATAAATTAGCTTATCCAAACCTATCACCTCATTTTTGGTGAAAAGGGATGAATGTCTTTGCCTATGGAGAGCTTATGAAAGACAAAGTTTTAAAAACTTTAATTGGTAAAGTTCCTAAAAAGATTAAGGGAAGGGTCTATAACTACAAAAAATTTTTTGATAACTCTATTGGTTACTATGGAGCTAAGAGAGAAGAAGGAAGTTATATAGATGGAGTTATCTTAATAGATATAACTCCTAAAGAGTTGGAAATCTTTGATGACTTTGAGGATCTCAATATTTACTACATAAGGGAGAAAACCAAAGCTATAGGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAATAACGCCCCTAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 11 1083289-1082729 **** Predicted by CRISPRDetect 2.4 *** >NC_014122.1 Methanocaldococcus infernus ME, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1083288 37 94.6 39 ....T...T............................ TTTTGTTTGGTTAAATGCACATCCTAAAAACTGCAAAAG TTTT,T [1083275,1083283] 1083207 37 100.0 38 ..................................... ACATTTTCCTCGGGAATGGAGGACATAGATCTGCTGGG 1083132 37 100.0 37 ..................................... AAGCCAAAGTTTTTTAGAGAATACGCTCTTATTTTAT 1083058 37 100.0 38 ..................................... GAATCTGATTTTCCACCACCTAAACATACTCCTGTGAA 1082983 37 100.0 36 ..................................... ACAAATCATTGATATGAGAAAACAACCCGTCCATCT 1082910 37 100.0 36 ..................................... GAGGAATGAGATAATGGCAAGAAGAAAAAGCACAAG 1082837 37 100.0 35 ..................................... CCAGATACCCAAGGTACATTAGAAATTGATACTTA 1082765 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 99.3 37 GTTTCCATCCTTGTTTTAATGGACTGGCGATTCAAAC # Left flank : AATCTCATTACTGGCTATTTCACACTTCTTAGGGTTTATGTCAATTAAAACTAAGTCATGTTTCTTTTCTAAGTATTTAGCTAAGGTAAAGCCCACCCTTCCTAAACCTGAGATGATGATATACAACCCTTTTCCCTCTTTTTTAGCTTGTAGTAGTGATATTCAACAGTTTTTAAGTTAATTCCTGTAAGCTCAGCTATTTCCTTAGGCTTCTTATCTAAGTATTTTTTTATAATTTTATCTATATTTGTTGGCTTCCCAACCTTGGCTTTAATTGGAATTACTTCAACTCCTATTTTCTCAAGAGCTTTAAGAATTTTCTTTGAGCTTCTTTTATATTTAGATATGGGGATATATATTTTAGAAGGCTCAACATTTTCCAGGAGAGCTATAGCTATATCTCTATCAAGCTCTTTATTTATATATATTTCCTCATGCTCTCCTAAGCTCTCAATCTTCTTTAGAATTTCTTCCTTGTTTTTTCCTCTAATTTCTATCAT # Right flank : CCTTAATGTCTGTCCTTATTTTATATCAAAACTCCTATAAAAAACTTTCTTTTTAAACCCGAGTTTTCTTACTGGTTGATTATTGAACCCCTATATAAAAGTAAGAAAGATTGTTCCCTCCATTTAAAAATACTATGCACAACCGTTAAAATAAAGCTCAGCAATTAACCCTTATTTCACTAAAAACAACTCCTAACTAAACCTAAAACATATAAAATAACAGCAAACAAACCAAAAAACTAAAAAATCACAATTCTCCAACGAAAAAATCAGTATTACTTTTCCCCAATTTTCTCGTACCAATTTTCAACAACCCCTATATAAAAGCAAGAAAACTTAATTAAAAACGTTAATAGCGATATCCAAATAACTAATAACAAAAAAATAAAAACCCATCAAACTAATTCCTTTTGATGAAACTTTTTCTAAAAGTTTCTTATAAAAGTTTCCTTCTAAAGGCAGCATAAATTTCTATAACAACAATCAATACATTTCTTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGACTGGCGATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 12 1111999-1111056 **** Predicted by CRISPRDetect 2.4 *** >NC_014122.1 Methanocaldococcus infernus ME, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================ ================== 1111998 37 100.0 35 ..................................... TATGATGTAGTATGTCACATACCTCTTATCCACGT 1111926 37 100.0 36 ..................................... TGAGGAATACATATGTGCTAAGAGAATTTATGTTGA 1111853 37 100.0 36 ..................................... AATGGATATGGGATTCTTGGGTTCTTTCGTCAAGAT 1111780 37 100.0 35 ..................................... CAGAATACCCCTAGACAAAATCCCAAAGTTAGTGT 1111708 37 100.0 35 ..................................... AATTATCTTCCCACCAACTCCTGAGCCAACAAAAA 1111636 37 100.0 64 ..................................... ATGTCTTTTGTTGAGATCACATTGAGAAAGAAAGTTCTGGAGGAGCTTGATTTATCTTATCCAT 1111535 37 100.0 37 ..................................... TTTAATCCAAGATGTTTATATTTAAAATGAACATTCA 1111461 37 100.0 36 ..................................... GTTTACGTTGAGATATGCAGATATGGTAACTAATGC 1111388 37 100.0 39 ..................................... CTTATCAGGAGATAGTAGAAAAGTTAAAAAGAAGAATTT 1111312 37 100.0 36 ..................................... TCACTAATTCGTTATCTATTGTATTTACCTCTGCTT 1111239 37 100.0 37 ..................................... GTGCCTTGGAGAAAAAAGTATGTTGTTGGAACTCCAG 1111165 37 100.0 36 ..................................... TTTTCTATTAATTGTGTTAGGGCTTCTAAACCATCG 1111092 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================================ ================== 13 37 100.0 39 GTTTCCATCCTTGTTTTAATGGACTGGCGATTCAAAC # Left flank : AAGGCTGCTGAGAGTGTTAAGAATATAACTTTAATGGATCTTGTTAAGGAAGTTGATGAGGAAGATAAAGACATTATAAATAAGATTCCTGTCCAATTCTTTCATGTGGATGGAGAGGAGAAGAGAGATAAGGATTCTCCATCCTACTACAATGAGGAAGAGGCTAAGAAGGTTTTAGAGGTTGTGAAGAAGTTGGTTAAGTATAAAATTCCTGTGAGTGTTATAACTCCATATGATGCTCAGGTTAGACTCTTAAGAAGAATGTTTGAAGAAGAAGGCTTAGATGTTGAGGTTAACACTGTAGATGGCTTCCAGGGAAGGGAAAATGAAGCTATAGTCATCTCTTTTGTCAGAACTAAAAACTTTGGTTTTTTAAAAGATTATAGAAGGTTAAATGTGGCTATAACAAGGGCTAAAAGAAAGCTTATTTTAATTGGTAATGAAAATTTACTGAAAAAAGATACAATTTATAATGAGATGCTGAAGTGGGCATCATTTTA # Right flank : CCTTAATGTCTGTCCTTATTTTATATCAAAACTCCTATAAAAAACTTTCTTTTTTAACCTGAGTTTTCTTACTGGTTGGTTATTGAACCCCTATATAAAAGTAAGAAAGATTGTTCCCTCCATTTAAAAATACTATGCACAACCGTAAAAACAAAGCTCAACAATTAACCCTTATTTAACCAAAAATAAAGTCCAATTAAACCTAATACTATAAAATAACAGCAAACAATCCAACAAACTAAAAAATCACAATTCTCCAACGAAAAAATCAGTATTACTTTTCCCCAATTTTCTCGTACCAATTTCCAACGACCCCTATATAAAAGCAAGAAAACTTAATTAGGGAAGTTAATAACGATATCTAAATAACTAATAACAAAAAAATAAAAACCCATCAAACTAATTCCTTTTGATGAAACTTTTTCTAAAAGTTTCAAAGAAAAACTTAATTAAAAACATTAATAACGATATCTAAATAACTAATAACAAAAACTCATTAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGACTGGCGATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 13 1120905-1119925 **** Predicted by CRISPRDetect 2.4 *** >NC_014122.1 Methanocaldococcus infernus ME, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1120904 30 100.0 34 .............................. GGGGATGAGATAGTTCTGATTGTGAAAGATGGAG 1120840 30 100.0 37 .............................. AAAAAAAGTCAAGCCATGTCCCAAAATCTTGTCGTAA 1120773 30 100.0 38 .............................. CAAACAACTTTACACTTGCTACTGAGCAGAGTAATGTC 1120705 30 100.0 32 .............................. TATGTTGATATATTGAAGGCGTATGATTTAAG 1120643 30 100.0 37 .............................. TTCCATCTCTCTCACCTCTTATTTTTGTTTTCGTTAT 1120576 30 100.0 37 .............................. GGAATTGGCTTAGAGAGGTCTATTTTCCTGCTGGCAA 1120509 30 100.0 40 .............................. ATTGCATAGTTCCTCATTCATATCCCCTATATACAATACA 1120439 30 100.0 39 .............................. TGAGTTACTGGATAAAATCCACAATGAAGTTATGGTAAG 1120370 30 100.0 40 .............................. AATGTTATTAGTTAGGGTTCCATTTGGAAGATATTCAATC 1120300 30 100.0 41 .............................. TCTCATTTTGCACACCTCCAGCAGCTTTACATTTTTCAGTA 1120229 30 100.0 37 .............................. ATATCCAGAAAAGGAAATAGGTGATAAGATGGAGTGT 1120162 30 100.0 44 .............................. GATTATAAGCTATTTGACAGGCTCAATTTGCCAATTGAAAAGCA 1120088 30 100.0 38 .............................. TTGCAAGATGTAGAGCAGTATATGATTTTCCTACTCCA 1120020 30 100.0 36 .............................. TACAGCATCTTTTTTCACCTCAACTAGTAGTGCACA 1119954 30 86.7 0 ...................A.A...A...T | ========== ====== ====== ====== ============================== ============================================ ================== 15 30 99.1 38 GTAAAATAACGCCCCTAAGGGGATGGAAAC # Left flank : AATATGGAAGATGGTTTAAAGAGAATAATATTACAATTAATGATGAGCCAAGGTTGTAGGTTTTCTATTCTTTAGTTTTTATATTTAAATTTATGAAGTTTATAAATTATTATTTTTTCTTTTTTATTTAAGTGTTATCTCGTTTAAAATTCTTGTTTTTAGATTTTTGTTGTTTTTAGGTGAGTTTTTTAATTTTTATTTGGTTTTTAGTTAGCTTCGGATGGTAGCTTTGTATTATTAATTTGAATATTCGGTTTTTATGAATTATTAGGATTTTTTAGTTTTTTAGGTTATTTGTTTTTAGAATTTTGTTTTCCCTTTGGAAATTTTGTTTTTGGTTTTGAGGTTTGGTTTTATTTTAGTATTAAGGAAAGTAAGGATTTTTACCAAACTTCGGATCTTTTTAAATAAATAGGAGAACCTAACCTTCATCCCGTTGATTAGGGATAAAGCTTATATACTATAAGAGCGAATGTTATAAACAAGCAAAATTTTGCCTT # Right flank : AAATAACAAAAAAGCTACTTACTAACCTCAACCATTCCAAAACCTAAGCTATTTTTTTCTCCAAAGCCACAGTCATAACCAAATTTAATTAATTCATAGTCTCCCCAAACCTTAAAAACCAAGTCTGAGCAAGTTAGATAGCCCCCTTTAATCTTAACTCTTTTTGGCTTAAATTTTAAAATTTCAAAATCAAAATCTAAGTTACACTCTTTATTAAAGTATTTCTCATATTTTCTTTTCAAGTTCTTTTTTAGATTTTCATAAAACTTTGAGTGTGTTGGTAGCAAGTCTTTAGTTTTTAACCTTCCATCTTCTTCTACTTTAGTCTTTAAATATATTGGAGATAAAGTTTTTAAAATTTTAAATTCTTTTGGAGACTCTAAAAGAGAGATCCTCTCAATATGAAAAATAATATTTCCTACTCTAATCCTTCCCTTCTCAAAAAGGCCATTTACAAAGCATTCTATAAACTCTTTATTTGGTGAAGATACATAAAAATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAATAACGCCCCTAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 14 1295975-1295745 **** Predicted by CRISPRDetect 2.4 *** >NC_014122.1 Methanocaldococcus infernus ME, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1295974 31 100.0 36 ............................... AGGAAATTGAAGAGGTTTTAAACAACCTTGAAAAAT 1295907 31 100.0 36 ............................... CATTCTCAACCCCCCTTTTTCTTTGTTTAGCCCCGC 1295840 31 100.0 34 ............................... GATACCATATTTTTAGCAATCCCATAATAACTAT 1295775 31 96.8 0 C.............................. | ========== ====== ====== ====== =============================== ==================================== ================== 4 31 99.2 36 AGTTTCCATCCCCTTAGGGGCGTTATTTTAC # Left flank : TCTACATAGGTGGAGGCTATCCAGAGCTTTTTAAAGAGAGATTAAGTAGGAATAAAGAACTGTTGGAGAGTTTAAGGGAATTTGATGGTTACATATATGGAGAGTGTGGGGGCTTAATGTATCTATCTAAATCTATTGATAACTACCCTATGGCTTCCCTCTTGGACTGTAAAGCCATAATGACAAGGGAAGTTCAAGGATTAAGCTATGTTATAGCTAAATTTAAAGAAGATTGCTTAATAGGGAAAAAAGATAAAGTAGTTAAGGGCCATGAGTTCCATTACTCTAAGTTAGTTGATGTTAAGGGAAAACTTTTAATTAAAATTTTAAGAGGAAAGGGAATTATAAATAATTTAGATGGTTTATGTAATGGTAAAGTTTTAGGCTCCTATTTTCACAATCATGCTGTAGCCAATCCCTATTTTGCTTCATGTATGGTGAATTATGATTTTTGATTCACTAACTGTTTTTTGGATATATTTTTTCGTTTCTATCTCTTA # Right flank : AAGGCAAAATTTTGCGTGTTTATAACATTCGCTCTTATAGTATATAAGCTTTATCCCTAATCAACTGGATGAAGGTTAGGTTCTTCCATTTATTTAAAAAGATCCGAAGTTTGGTAAAAATTCTTATTTTCCTTAATACTAAAATAAAATCAAACCTTTAAACTAAAAACGAAATTTCCAAAGGGAAAACAAAATTCTAAAAATAAATAACCTAAAAAACTAAAAAATCCCAATAATTCACAAAAACCGAATATTTAAATTAATAACATTAAGCTACCCTCCGAAACCAACCAAAAACCAAATAAAAACCAACAAAATCATCTAAAAACAACAAAAACCTAAAAACAAAAACTTTAAACAAGATAAAACCTAAAAACCAATAAATATAAAAACCCCATCAAAAAGTTTTTAGCATGATAGTTATGATAGCTGAGCTATTAGAAAGTTTAAAAATTTCAGGAATTTACACAATAAAATTATTAGCTATTATTTTACCAACT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTCCATCCCCTTAGGGGCGTTATTTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //