Array 1 24147-25435 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXA01000215.1 Pseudomonas aeruginosa isolate NA31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24147 28 100.0 32 ............................ ACACGGGTGACTATGCGTTTACTAGCCATAGA 24207 28 100.0 31 ............................ GCTGCCGGACGAACGCACGGCGCTCCAGGTC 24266 28 100.0 32 ............................ TCGACGTGCTGGATATCCCTGCTCGCACTCAG 24326 28 100.0 32 ............................ TGCAGCGATTGCACCTTGGCCTGCTGCCGATC 24386 28 100.0 32 ............................ AGGCCAAGGCACATTCAGCGTCGCCGACCCGC 24446 28 100.0 32 ............................ ATTGGACAGCACTACCCAGCACTCGGCAGGCT 24506 28 100.0 32 ............................ ACTGTATCGCCGCAAACGAGCCCGTTCTGGCA 24566 28 100.0 33 ............................ AGTTGATATCAAGATGCCGTGCGGCTCTGTATT 24627 28 100.0 32 ............................ TCGCCCATCAGCCAGATGCAGCGCAGCGTCAA 24687 28 100.0 32 ............................ ATCCATAGAGCACGCTGTTGATGCGCACATGG 24747 28 100.0 32 ............................ ATAGAGGCCGAAGCTGTAGCCGGTGAAATCAA 24807 28 100.0 32 ............................ ACACCAAGAGTCGCGGCGACAACTACCAGACG 24867 28 100.0 32 ............................ TGCGGACCCGCGCCGAGCAGATCGCCGCGACG 24927 28 100.0 32 ............................ ACTGGAGACGAGCGCATGCACGACCCTTTCAA 24987 28 100.0 33 ............................ GACCAGGGCGTCGACAGCCGCAATCTCCATGGC 25048 28 100.0 32 ............................ TGGTAGGCCGAGCGGACAAAGGCGGTGGCGTG 25108 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 25168 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 25228 28 96.4 32 ..............C............. TTGGGCTTGGGAGTGCTGCAGTTAGACCTGCC 25288 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 25348 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 25408 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTGGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGACGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 35839-34309 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXA01000215.1 Pseudomonas aeruginosa isolate NA31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35838 28 100.0 32 ............................ GCAAGGGGCGCTTAGGTGACCGAAGGCTGAGA 35778 28 100.0 32 ............................ ATAGACATAACTCCCGTCTGGGTCGGTAGTGA 35718 28 100.0 32 ............................ TCTAACCAAGCTTCGACCCTGCCAGGGCCTCG 35658 28 100.0 32 ............................ TTTCGGCGGAAATTCAACCCCCTGGAGACATG 35598 28 100.0 32 ............................ ATCCCGATCTGGAGCCAGGTGTCGTAGTCTTC 35538 28 100.0 33 ............................ TTGGCAACGACGATCTGCGCCCATGCTTCGAGG 35477 28 100.0 32 ............................ CACTAGGGTACAGGACTGTCGAAAGACTGCGC 35417 28 100.0 32 ............................ TACAAGGACAAGCAGAAACACTACGAGTGGCT 35357 28 100.0 32 ............................ TGATGTCCACTCGCAGTTTCAGTGATGATGAT 35297 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 35237 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 35177 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 35117 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 35057 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 34997 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 34937 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 34877 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 34817 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 34757 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 34697 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 34637 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 34577 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 34517 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 34457 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 34397 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 34336 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //