Array 1 604204-594825 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGZL010000001.1 Psychrobacter immobilis isolate Psychrobacter immobilis 1184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 604203 32 100.0 35 ................................ ATCTCATCTTGCGATGTGCCGCCTTGTTTTTTATG 604136 32 100.0 35 ................................ TGTAGCTGTCTTTTACCTTGCTCACACCAAAGTCC 604069 32 100.0 35 ................................ CCGTGTTACCCGTTAGCAAAAGATTAGGTGCTCCC 604002 32 100.0 34 ................................ TCTTTCGATGGCTCAATCAACACCCATCCGATAA 603936 32 100.0 34 ................................ ATTAGTAGCACAAAGAATGACAGCTAAAATGCAC 603870 32 100.0 34 ................................ TGCAAAAAATGCAGGGTCAAGACCAAGATATGAC 603804 32 100.0 35 ................................ AAAACAGGTTACAGGGTGGTAAAAATTTAGATAAC 603737 32 100.0 35 ................................ TACTAAGGGAATGTTAGCCGTTAGGCTTACTTGTT 603670 32 100.0 33 ................................ GCTCATACACCCATACCTTAGTGCGCTGCAAAA 603605 32 100.0 33 ................................ TGATCAATCAAGTGAATCGGTATGATGCCACTA 603540 32 100.0 32 ................................ TCAGTCTGATAATCCGTGTCCATAGTCTTAGC 603476 32 100.0 33 ................................ ATCGAGCTGATCGTCAGTAAACAGACGGCTATA 603411 32 100.0 32 ................................ ACCCGAGCAAGTTGCATAAATAGTAGAAGTAA 603347 32 100.0 33 ................................ ATTAGAATAGTTAATCAAAGTAAGATGAAAATC 603282 32 100.0 33 ................................ TTTTGCTCGTGCTGCAATCAATAGAGTTAATGA 603217 32 100.0 34 ................................ AACGCTGATAATCCTAGTATCTTAATAATGATAT 603151 32 100.0 32 ................................ TGATACTAAATGTGACATTTTAAACACCTCTG 603087 32 100.0 32 ................................ TATACAAGATGAGAGTATTTATATAGGCGGTA 603023 32 100.0 34 ................................ CTTTGCGGTCCAGCAGCCCCAACCATCATGTAGG 602957 32 100.0 32 ................................ TATCTTATTGTCCGTCATATCAATAATATTAT 602893 32 100.0 34 ................................ TTGCTTTTGTTGCTCGATGGGCGCTAGCGCTGCT 602827 32 100.0 34 ................................ TATCCCCATGACACCTATTTGCACTTACTTGGGC 602761 32 100.0 33 ................................ TACTTGAGCGCGAAAGCTTGCGAGGGGATTCTC 602696 32 100.0 33 ................................ GCAACACCAAAAGTCGATGCAGCCCTAGAGTTT 602631 32 100.0 33 ................................ ATCGTGTCCAGCGTGGCGTCTATGTGCCAACGG 602566 32 100.0 32 ................................ TAATGAATTAGGGTCTGAGTCTAGCGCTGCAA 602502 32 100.0 34 ................................ TGTAGTATTCGACATAACAATCTCCAAAAGGTGT 602436 32 100.0 34 ................................ GTTAATAGTACTTGGGTGCTAAAGGATCAGCATT 602370 32 100.0 34 ................................ TATTAGAGCATCGTTAAGTATGGTAGAGCGCTGC 602304 32 100.0 32 ................................ ACCAGATTCCCATGCGGCGACTGCGGACTCTA 602240 32 100.0 33 ................................ TATGCGTCCGGTAACACCGGGTTCTGGGGCACA 602175 32 100.0 34 ................................ TCGTACTAGCATATCGTTGACCGCTGTGTAGCTA 602109 32 100.0 33 ................................ CGCGAACTTAGAACCAACTAGGTCGACACTTAG 602044 32 100.0 34 ................................ AATACGCTTGATGAGCGTATTGAAGACTTAGCTA 601978 32 100.0 34 ................................ GAGCTGTCATCATCTAGCGATGGTATAGGCGCGT 601912 32 100.0 32 ................................ TTGTTGTCTCAGTCTGTTAAAGAATCAGTGAT 601848 32 100.0 33 ................................ AACACTTATCCAGCCAAGGACGACAGCAATGAC 601783 32 100.0 32 ................................ CTATACACTGGCGCTACCGCAAAGAGAACAGA 601719 32 100.0 33 ................................ AGGTGCAGATATTGCGGAGAATGAATCACCTTA 601654 32 100.0 32 ................................ AAATTCATTCTTAATAGATAACCCCTTTTGCC 601590 32 100.0 34 ................................ AAATTGCGGGTTTAGAGTTTAAGCAAGCGCAATA 601524 32 100.0 34 ................................ ATGGGAAACCAGTACGTTTGAACCGTACACTTAT 601458 32 100.0 33 ................................ AGATTGCATGTAGTTATTTAGATGTTGGCGAGT 601393 32 100.0 35 ................................ TATTCAACACGCGACTATAACGGCATGACAGGTGA 601326 32 100.0 33 ................................ ATGTTTATGAAAATGGAGGTCAAAAAGAAGTTA 601261 32 100.0 33 ................................ GATAAGTATAGTAACAGCTTTTAAGTGGCTGTT 601196 32 100.0 33 ................................ ACCAGTTTCACGACTAACAATATGCCATGCTAG 601131 32 100.0 32 ................................ ATTTTATACGCTCCAAAGATTAATATTTTTAT 601067 32 100.0 33 ................................ TATATATACTAGCCTATTCTGTCAACAAGTTAT 601002 32 100.0 35 ................................ TGTCTTGCTGACGCAGTACCACCCATCGGGCTATG 600935 32 100.0 32 ................................ CTGCGGTGGGCATTATGCTGCGTGGCAATGGG 600871 32 100.0 33 ................................ TTGCTGCCATTTCTTGCTCTATCTCTTAGCGTC 600806 32 100.0 32 ................................ ATCAATGCCACCTGCTACCAAGTCGTCTTTTG 600742 32 100.0 33 ................................ TTGCAATACACTCTTAAATCACTCATCGCCCTT 600677 32 100.0 33 ................................ TATAAAACAGCTCGAACAGTTAGATTTAGCGAA 600612 32 100.0 33 ................................ TTGAGAAGACACAAATGCGCGCAACTCATTATT 600547 32 100.0 33 ................................ TAAAAAATCTACATGCTCATCTATAACGTCTTG 600482 32 100.0 34 ................................ TACTCACGCAAGAAGCTCTCGAGTAAAGACTATC 600416 32 100.0 33 ................................ GCTTGGCGCAGCGGATAAGCTCTCGCGTATCAG 600351 32 100.0 32 ................................ TGTCACTGCATCGCCAGTGATAACCACTGTCT 600287 32 100.0 33 ................................ AAACTGTCTTGCGAGTATTTCATATCACGAACA 600222 32 100.0 35 ................................ TCTTGAAGCATTTGATAGTGCTGGCTAGTTAGCTG 600155 32 100.0 33 ................................ TCGCCAGCATGGTCAACGCTTGGCATACCCATT 600090 32 100.0 34 ................................ GCTGTGACTGGGGCAGTCATCGTCAGTCAGTTGC 600024 32 100.0 34 ................................ GCTGTGACTGGGGCAGTCATCGTCAGTCAGTTGC 599958 32 100.0 34 ................................ CTTTTTGGTCTATAACAACTATTCGCAGGGTAGC 599892 32 100.0 34 ................................ GCATGGCTTTGGACGTGGCAGTACGCTGCATGAG 599826 32 100.0 33 ................................ ATATCACGAACATAGCCATACGGTATGCCAGTC 599761 32 100.0 33 ................................ ACGAGCGGCATCAGCCCCAGCTTTTGCGGCATC 599696 32 100.0 34 ................................ GGCATTATCACTTTTTATAATGTCGATTATTTCT 599630 32 100.0 33 ................................ CAGTTGCCTAATTGCCCTACATCGTGACGAGCG 599565 32 100.0 33 ................................ CGACCCACATGGTTAAACAAAGAAAATATATTG 599500 32 100.0 34 ................................ GCCATCTGACCATCAGCGCCAATAGATTTGACAG 599434 32 100.0 33 ................................ GTACTGACCGCTTGCGATGCTCTGAATCATAGT 599369 32 100.0 33 ................................ ACCAGGCATGAGATCTTCTAGCATTTCTCTCGT 599304 32 100.0 34 ................................ TTTTAAATCCTTAACTTCCACCCACTTTGGTTTG 599238 32 100.0 32 ................................ TAACCTTGCATGACGATAAGACTATCCGTAAA 599174 32 100.0 33 ................................ ATCAAGTGGCGGTAGATTAGCAGCTTTGCGTAG 599109 32 100.0 33 ................................ GATATGGTCCGGGCATCTCAAAGTATTGGTTTT 599044 32 100.0 35 ................................ TCTACTAACGGCACTTGCCCTGCTGAATTGCCCAC 598977 32 100.0 34 ................................ ATAACCGATATGTTTTAGGAGAAAGTCATGAGCC 598911 32 100.0 33 ................................ TTTGATTAGCCAGCGCTAATAAGTAAGGTGCTG 598846 32 100.0 33 ................................ TGATAATCCAGAGCAACTGCGCACAGATCTAAT 598781 32 100.0 34 ................................ GGTGAAATCCTCAACCTCATCTTTAGTGTAAATG 598715 32 100.0 33 ................................ ACCAATCCAGCCGATGCCGCTATTGCATGGGCT 598650 32 100.0 32 ................................ AGCCAAAAAAGCAGCGTTTAATCAAAGCATAG 598586 32 100.0 34 ................................ GGTGAAATCCTCAACCTCATCTTTAGTGTAAATG 598520 32 100.0 33 ................................ GATAAAGAACAGCCTGTGGCACAGAGAATTTAA 598455 32 100.0 33 ................................ ATGTTTGAGATTGTACCTGCCCACGTTTTAGCC 598390 32 100.0 34 ................................ TTTAGGCGCTACTTTTGCCTTTGGCTCGTCAATC 598324 32 100.0 33 ................................ AGCGATAGCGTTTTTGATGATAGTTGAAGTAGT 598259 32 100.0 34 ................................ TAGCGTGTTTTTGAAATGATGTTCCTCTATAGGA 598193 32 100.0 33 ................................ ATTGCTCAATAGATAACTTTGAGACAGAGGTTA 598128 32 100.0 32 ................................ GACTACCATCAATAGCAACATCAACAATGCTA 598064 32 100.0 33 ................................ AATAATTCTTAAATATTTTAATCTACTTTTGTG 597999 32 100.0 34 ................................ ATTGATAACTATAAGTTGCTAAAAGTGATTAGCG 597933 32 100.0 34 ................................ TGTTCCGTCCTCTATTGCCTTAATGCTCTGATCG 597867 32 100.0 33 ................................ AACCCCGATTTGGTCAGCGATTTTGTTTATCGG 597802 32 100.0 35 ................................ GCTCTAATTCCAACGCTGTGAGGTTACGAGGGTTT 597735 32 100.0 33 ................................ AAGGTGCTAAAGGCTATTAAGCCAACAGTAGAG 597670 32 100.0 33 ................................ CAACACGTAGGCAAATCAGGTCGCACTGCTGAC 597605 32 100.0 33 ................................ ACCCTCAATGAACGCGCTGCTCTTACCGTCTTG 597540 32 100.0 33 ................................ TTTAAATGATTTTAATTTAACTTATCTTGTTAG 597475 32 100.0 32 ................................ TTATCTGACACGATATTAAAAGTTATTGAAGC 597411 32 100.0 34 ................................ ACCTTTGATTGATTGATTGGAGTTAATTTATTAA 597345 32 100.0 34 ................................ ATAATTAACCTGAGTCAATCTAACGGGGGTCTAA 597279 32 100.0 32 ................................ TTTTTGCGTTCGCGAGGTGGCGACTAACTACC 597215 32 100.0 35 ................................ GGCATTGCGATATAAACCGTACCGCTTGTGTCGTC 597148 32 100.0 36 ................................ CATCACCGATACGAACGCTACTACCACCGCGCCCAC 597080 32 100.0 34 ................................ GATATTACCCGCAGCCGTTTGACTTAACGCACCA 597014 32 100.0 32 ................................ TTGAATCGAGCTGATAAAGTCATAGTAACTCC 596950 32 100.0 33 ................................ GAGCGGAAACTTAAATGGATTAACGAGGTGCTA 596885 32 100.0 33 ................................ TATACCAAAAAAAGACAGTTCAGACAAAAATAA 596820 32 100.0 33 ................................ CACGATTAGCTCTATCTCTTAGCGTCTTTAATC 596755 32 100.0 32 ................................ TAGGAACATCAATAGGGTGTACGCTAACCACG 596691 32 100.0 34 ................................ TAGCACGTCTGGCTTGATACCTAGCCTCGCTAAT 596625 32 100.0 32 ................................ CTCTAGGCGCTCAATCTCAACTCGTAACATAT 596561 32 100.0 32 ................................ GCTTGCCATAATGCTGTTCAAGTGATCGTGAC 596497 32 100.0 35 ................................ TGCTCACACCAATCATTGCTATCTGAACCACCGAT 596430 32 100.0 34 ................................ GCTGCCAGTGACAGATAAAGGCGTATTGTTGACT 596364 32 100.0 33 ................................ TTTAAGTCTCCAATATCATCCCACTTATTGCCA 596299 32 100.0 34 ................................ AAGGCTAAGCAAGACTTTGTTAGTGCAACAGCAG 596233 32 100.0 34 ................................ ACTTCTACAGTGGCAGACAATACCGAGGCACAAC 596167 32 100.0 33 ................................ ATGCAGCACAATCATGTTAGTGACTGTTTGACC 596102 32 100.0 34 ................................ ATGCAATACTAGAGCGTGACGACTTAGTATCTTT 596036 32 100.0 33 ................................ AGATACTTTGCTGTCTATCAGACCAAACCGAAA 595971 32 100.0 32 ................................ GTTGAGGTAAGACGTAAAGCTGCTACTGGACA 595907 32 100.0 35 ................................ ATATAGTCAAGCTGGCTATTGACGTTTAGCACTGG 595840 32 100.0 35 ................................ CAGATGACATTGTGTCGCTCCATAAAAAAGCCCTC 595773 32 100.0 34 ................................ AGTCATCAGTAAGTCAATTTGCTTTTCTAGTGCA 595707 32 100.0 33 ................................ TTTTACTTAGCGTAACACCTTGGGGGTAACTAC 595642 32 100.0 34 ................................ GTCAACTTAGCAAGCGGTGCTGTATATCCTGAGT 595576 32 100.0 33 ................................ GAGTCCGTAAGCGTTCAAACCTATACCAAGCCC 595511 32 100.0 32 ................................ CTCTAGGCGCTCAATCTCAACTCGTAACATAT 595447 32 100.0 32 ................................ GCTTGCCATAATGCTGTTCAAGTGATCGTGAC 595383 32 100.0 35 ................................ TGCTCACACCAATCATTGCTATCTGAACCACCGAT 595316 32 100.0 34 ................................ GCTGCCAGTGACAGATAAAGGCGTATTGTTGACT 595250 32 100.0 33 ................................ TTTAAGTCTCCAATATCATCCCACTTATTGCCA 595185 32 100.0 34 ................................ AAGGCTAAGCAAGACTTTGTTAGTGCAACAGCAG 595119 32 100.0 34 ................................ ACTTCTACAGTGGCAGACAATACCGAGGCACAAC 595053 32 100.0 32 ................................ CTCAAAAATGATGTTATCTAAAATACCTCTAG 594989 32 100.0 36 ................................ CGAATAATTGTGCCTCAAAGCACTTTTGTGCTATCT 594921 32 100.0 33 ................................ TTTTATCAGCTCTTTAATTTGAGCTGCCGTTAA 594856 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ==================================== ================== 144 32 100.0 33 TTCGCGTCCATCACGGGCGCGTGGATTGAAAC # Left flank : GCAACTTGCGCTAAACGACTGCGCCATGTCGCCAAGCATTGTCTAAACTTTGGACAGCGGGTACAATATTCGGTGTTTGAGATTGAGGTTAATCCTGCTCAGTGGACGACGCTAAAAGCTACGCTTGAGGATATTATCAATCATGATGTTGACAGTTTACGCTATTATTACCTTGGTAAGAACTGGCAAAATAAAGTTGAACACGTCGGGGCAAAACCTGTGCTAGACTTAAACGATGTGCTGCTATTTTAGTCGGCATAATCAGCGCCAAAAGCTAGTATTTGACTGCAAAAAGGTCAATGCGAACCTATAGCAGACATAAAATCCCTAGGAGACTCGCAATAGTCTCGCCACACTATTTAACAGATTGATTTTAATGACTTTATTTTATTATAATAAAACTTTGGTAAGCGAGATGCTTGCCAAATTCGCCTACAGTTTAGATGTTCGCAAATTTCAAGGTTTTTTCTTAACCTTATTAGCGACTTAGACTAGGGGCT # Right flank : TATTTTACTAATAGCCTCCTTTTACAGACCATATTCACACATTAATAGGAACATCTTTAAAAACATCTCTATTAACAAGTTTTTACTGGTTATCTGCACCGTGCTTTTAGTATGATTTAGATGTAGCTACTTTGCAAACTTAGAGTCCATAGCCATTCATCAATGAGGTCTATTATGCGCAAGATTCCTATTTATTCCCACCCAGCCGCTGGTTGGCCCGCGCTAATTGCCTCAACTCGTAAGCTGATGGATTATAAGGCTTTTACTCGTGGTAGCATGAGCGTATTCAGTAGTAACCAGCCTAATGGTGGCTTTGATTGTCCAGGCTGTGCTTGGCCTGATCATAAGACTCATAAGACGCTAGATGTCTGTGAGACGGGAATAAAAGTGCTGGCAAGCGAGACGATGTCGACCAAAGCCGATGCGGAGTTTTTTGCTAGACATACCGTGACTGAGCTACAAGGTTGGAATGGTTATGAGCTTGAGCATAGCGGGCGTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGCGTCCATCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2732316-2721666 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGZL010000001.1 Psychrobacter immobilis isolate Psychrobacter immobilis 1184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2732315 28 100.0 32 ............................ ACAGTAGGCTCAAGTCCTACGACCACACAATC 2732255 28 100.0 32 ............................ TACTGGTTAGGCGTGGGCGTACCGATAAGCTC 2732195 28 100.0 32 ............................ ACGCATACACCCGTTAACCCTAAGCCCGCTTT 2732135 28 100.0 32 ............................ AGTACGCGCGTGCACAAGTCGGCAAAAAAGGC 2732075 28 100.0 32 ............................ ATCTGATAACGATCAGCGCATTGATTAGCTTA 2732015 28 100.0 32 ............................ AAAGTCGAGATCGATGCTGATAAGCCGTTGGC 2731955 28 100.0 32 ............................ GACCCATGCCGCCTCTTCCGCTGCGTCGTAAT 2731895 28 100.0 32 ............................ TTATCAGCACTTAGCGCAGCGGTATAGGTACG 2731835 28 100.0 32 ............................ TGTAACTCGTTTCAGAATTATAGGCTGGGTAA 2731775 28 100.0 32 ............................ TACGGCAACTGAGCCTAAAAACCCGTACCAGT 2731715 28 100.0 32 ............................ AGCAGCTAGCCAACCCGCAGCAGGTGCAGGCT 2731655 28 100.0 32 ............................ AAATGAAAAACAGGATAAACCTATGAAACCGT 2731595 28 100.0 32 ............................ CTTGAATACCTTGAATGCCTTGGTCGCCTTTG 2731535 28 100.0 32 ............................ GCTGTCAGCTTGTCAAATAACGGTATGTATAG 2731475 28 100.0 32 ............................ GTTAGATTGACTCAGGTTAATTGTTAAAGTGT 2731415 28 100.0 32 ............................ GCCAGCGGATGCCACGGCAGTTGAAAAACAGC 2731355 28 100.0 32 ............................ TGATAAAGGGCTGCATTACGAGCGTAGTCTGC 2731295 28 100.0 32 ............................ GCTTGCGTAGACAGTGACACGGCCTGCATCTT 2731235 28 100.0 32 ............................ GTTATAAAGCGATGATGAATTTGCGATGATAA 2731175 28 100.0 32 ............................ CGCTCGATTAAATGTAAAAGCATCTGCAAACG 2731115 28 100.0 32 ............................ TCAGACAGCTGCATCTCCTCGCCATCAGACCA 2731055 28 100.0 32 ............................ TCCCCAGTAACACGCCCCGCTGATTTTTTATC 2730995 28 100.0 32 ............................ AACAGCAGAGCTAGGGTCTTTATATTTAACAA 2730935 28 100.0 32 ............................ TATTTCTGATGTTGCTTCTCAAGTAGTCGCTA 2730875 28 100.0 32 ............................ GCGTTTTGCCATACCTGTCACAATAGACCATA 2730815 28 100.0 32 ............................ ATGCTTATTTCGTATCTTATTAAGCGTGGTAC 2730755 28 100.0 32 ............................ ACTAATCGGATTATATACCTTACTAACGTCAG 2730695 28 100.0 32 ............................ ATACTGATAACTTATTTCTTTAGTACCAAAAC 2730635 28 100.0 32 ............................ GCCAGAGGTAGAAGAAGACACTGTTATAGATA 2730575 28 100.0 32 ............................ ATGAAGATGTTAGTAACGTTAATAGAAAGTAA 2730515 28 100.0 32 ............................ ACCTACTAACAACCTGACCAAAGGAGCTTAGT 2730455 28 100.0 32 ............................ GAAACACAAAACACTTTTGGACAATCTCTTCT 2730395 28 100.0 32 ............................ TCTTTTCTGAGGCTTCGCTCATAGTGCCGTAG 2730335 28 100.0 32 ............................ AACAAAAACAAGCACAATTGTCGCTATCAAAA 2730275 28 100.0 32 ............................ GTTGACCGCTAGCGAGGTGGGACTATGACTCA 2730215 28 100.0 32 ............................ CTCGGGGTGTGACAGCTTGGTAACTTCAACTT 2730155 28 100.0 32 ............................ TGTCACACCCCGAGGGTGGTGAACCAGTCAAG 2730095 28 100.0 32 ............................ TTAAAATGTCAGGACTGATTGATTTAGCAAGC 2730035 28 100.0 32 ............................ AAGACAGCGAGGAAGTGCTGGAGGTAGTAATA 2729975 28 100.0 32 ............................ TGAGGCTATCGTCAAAAGCAGTGACAACGATA 2729915 28 100.0 32 ............................ GTTATTTTCTAATTCTGATTGCATTTTATTTT 2729855 28 100.0 32 ............................ TTTAGCTTTAGCAGCAACGACAGAGGCTTTCA 2729795 28 100.0 32 ............................ CAAAAAAGCGGGTTCGGTGGTTATTTTGACCC 2729735 28 100.0 32 ............................ GAAATATTCATGAAGATGTTAGTAACGTTAAT 2729675 28 100.0 32 ............................ TTGAGTACAGTTTTACTATGTTGCATGTTGTA 2729615 28 100.0 32 ............................ TGCCTGACTCGAAAGACTCAATACGCCCTATG 2729555 28 100.0 32 ............................ ACCTGAGCATAGCCAAAGCGTTGCATGGCTGT 2729495 28 100.0 32 ............................ ATCAACACCGTATAACTTTGGAAACATAAGAG 2729435 28 100.0 32 ............................ CCACCATAAGGAGAATTGGCAAGCCCGAAGTA 2729375 28 100.0 32 ............................ AAGAATTGCAATCAGCTAATGATTTGATGATG 2729315 28 100.0 32 ............................ TAAAGCAAGATAGTCGCTTGCCCCACCCAATT 2729255 28 100.0 32 ............................ AAGCTGGCTAGTCATGCAGCACTTGCTCAGAA 2729195 28 100.0 32 ............................ TTGCACAGCCGCTTGATTGTCATTTACCGTCA 2729135 28 100.0 32 ............................ CACCACTTGCGACCACTTACCCACATATTGAT 2729075 28 100.0 32 ............................ TCGGACAGGCTCATAGTAGAGCCATCCGACCA 2729015 28 100.0 32 ............................ ATCATATAAGCCACGCCAGTGGCGGTCACGAT 2728955 28 100.0 32 ............................ ATATATTGCCCAACTAAGCGCACCCGCACAAA 2728895 28 100.0 32 ............................ AATCATGTAATAATTACCTCGTTGTTAGAAAA 2728835 28 100.0 32 ............................ CACTAAAAACAGAAACTAAGTCTGAGCTGATC 2728775 28 100.0 32 ............................ TGCAAAACCCGACTCGTTAAAGCTGCGTGTAG 2728715 28 100.0 32 ............................ ACAGGAGATGTAGCAACAGCCGTAGATAGGTC 2728655 28 100.0 32 ............................ ATTAACAGCACCGTTACCAATTGCTGATGATA 2728595 28 100.0 32 ............................ ATTACAAGGCGCTAGGCTATCCATCATTGCAG 2728535 28 100.0 32 ............................ TATCGGTAGTGCTTCAAAATTAGATAGTTGCT 2728475 28 100.0 32 ............................ CCATGCGCTAATTGGATAAGACACGGCTATAG 2728415 28 100.0 32 ............................ ACTCGCAGAGCCAGAGACGCCAAGTGGTTAGT 2728355 28 100.0 32 ............................ TCATACCCACCACTGCACACAGACGGCTATCA 2728295 28 100.0 32 ............................ ATTCCCGAATAATGCTTGCTGCTTAATAAGTC 2728235 28 100.0 32 ............................ TAATAGTTACTTCACCTGTTATGTCTTTCTTA 2728175 28 100.0 32 ............................ AGAACAAACTCAATACCATACAAGAGTATGAA 2728115 28 100.0 32 ............................ GCCCCAGCAAACATGGTATCTACATCATCAAA 2728055 28 100.0 32 ............................ CTGAACGACAACCGTTTTGTTGGTATTGGTAG 2727995 28 100.0 32 ............................ GTCAGCATGGTTTTGTACTATACGATAGACCT 2727935 28 100.0 32 ............................ TCATTAGTAAATAGGTGGCTCGTATCGTGAGC 2727875 28 100.0 32 ............................ AGCGTGTAAGGCTCGCCTGTCTTTGTTAGATT 2727815 28 100.0 32 ............................ CAAGTCTTTGCTTGTTGGTTCGAGCTGCTAGT 2727755 28 100.0 32 ............................ GTCAAAACTATGCACAGAGTTACGCATACCGT 2727695 28 100.0 32 ............................ TAGGAGAAGGTAAGCATGGCAATAGAAGATGA 2727635 28 100.0 32 ............................ AATTATTAACAATACCCTTGCATTTGTCGGTC 2727575 28 100.0 32 ............................ AACCTGCAAAACCCTAACAGCTACGAGTCAAA 2727515 28 100.0 32 ............................ AAGCGCATCGGTGTTGATAATCTAAACGCCAT 2727455 28 100.0 32 ............................ TTGACGGACTGCGAATATTAAGCACGCTTTTA 2727395 28 100.0 32 ............................ TTTGGCGCTCGATAGGAGACAACTAAAATGGC 2727335 28 100.0 32 ............................ ACATAAAATTAGTAATGTTATCTGCATCATCA 2727275 28 100.0 32 ............................ GATATAAGTAGCACCCTGATCGGTCATAAAAT 2727215 28 100.0 32 ............................ TTTAAGCGGTCTAATAGTTATATTAATAACGT 2727155 28 100.0 32 ............................ TTGCTCGGTCATATAATCAGTTACTTGCTTTT 2727095 28 100.0 32 ............................ ACAAAAGTTTATTTCAATGTGGTTATCATTGA 2727035 28 100.0 32 ............................ ATTTACGCAAAATGAAAAAAGATGAGCTAATA 2726975 28 100.0 32 ............................ AATAACGCTATATTAGTCTATATATAATATAT 2726915 28 100.0 32 ............................ CACTATACAAAGCCACGCACTTTGACCCCATG 2726855 28 100.0 32 ............................ AAAGGGGAATCAACATGACTATAAAAAAACAA 2726795 28 100.0 32 ............................ ATTCGCGCCTATTGTAAGGAACGTAACGCCAC 2726735 28 100.0 32 ............................ ATGTGCATATACACATTGCCCCAGCCTTGAAA 2726675 28 100.0 32 ............................ TAATACCATTGTATGATCGTTTAGATAATCAA 2726615 28 100.0 32 ............................ AAAGTATATATAAAGTCGCTGGCTTGCTCGTT 2726555 28 100.0 32 ............................ AAAAAGGAATAAAAACATGACTTATTACAGCG 2726495 28 100.0 32 ............................ GCCTATATCATTTACTAAATATTCAATGATAA 2726435 28 100.0 32 ............................ GTAAGGCACAGAAATATAGGAAACTGGTTTTT 2726375 28 100.0 32 ............................ TGCTAAAAACCTGTATAAATTGCTGTTTTTAT 2726315 28 100.0 32 ............................ GTTAAATGGCAAGCTAATTTGTTTTGTTTGGC 2726255 28 100.0 32 ............................ GTTAAATGGCAAGCTAATTTGTTTTGTTTGGC 2726195 28 100.0 32 ............................ AATTGCGTAAAATTGTTAGGCGTGTAACCGTG 2726135 28 100.0 32 ............................ TCGCTAAGTCCTTTTATGTCGCTTGCATTGTG 2726075 28 100.0 32 ............................ TACCATTTAACGGGCTTTACCATAGCTTTCTA 2726015 28 100.0 32 ............................ TAAAACCATTGTATTGTTGTTTAGGTAATCAA 2725955 28 100.0 32 ............................ TATACTGGATAAGCGCATAAGGTTAAAAATTT 2725895 28 100.0 32 ............................ GTAAGGTACAGGAATATAAGCCACTGGTTTTT 2725835 28 100.0 32 ............................ CACAGCCAGTATAAAAATGACTGTCATTATCG 2725775 28 100.0 32 ............................ ATGACTAAACAAGACAAGTTAAAAGCCATACG 2725715 28 100.0 32 ............................ AAGCAGATCAAAAAAGCCTTTACTGATGCCGA 2725655 28 100.0 32 ............................ AACACAAGCCAGTATTCATACGTAAGGATTTA 2725595 28 100.0 32 ............................ TGTGTTACAGTTGTTAACTTCAAATTCTCGGT 2725535 28 100.0 32 ............................ TCAAAAGCCTTCTCTTCCCTCCAACGCTTTCT 2725475 28 100.0 32 ............................ ACGCTAAAACATCGTCATGCTGATAATTAAAC 2725415 28 100.0 32 ............................ TGCATTCATCCATGTTGAGTACACGCCCAAAT 2725355 28 100.0 32 ............................ AGATAGATACTATTCTGCCGTGCAGACAACAA 2725295 28 100.0 32 ............................ ATCCGAATAATCAGCCCACTTTTGCATCATCC 2725235 28 100.0 32 ............................ TAGCGTATGGCTATCAGCATCGGGATATAAAT 2725175 28 100.0 32 ............................ TAGCTTCGTCGATAGTTGCAAAGCCTCTCGCT 2725115 28 100.0 32 ............................ TGTCACTGCACCTGCCGCTAGGTCGAGCAACC 2725055 28 100.0 32 ............................ CTGATGAACTGAAAGCTGCTAGAGCAAGTCAA 2724995 28 100.0 32 ............................ AAGCCGTTTGCCGCGCGATTGATACTCGATAG 2724935 28 100.0 32 ............................ GTAACGTACAAGCACCGAGGCGTAGATAATTA 2724875 28 100.0 32 ............................ TGTACTGCTCTCTGAGCTTGGGTGCTACGTTG 2724815 28 100.0 32 ............................ ATCAATCACAATATCTTTATTATCTTTCATTT 2724755 28 89.3 32 ....................TGA..... TTCCTACGACCTCTAGCGAATAATTCCTATCT 2724695 28 100.0 32 ............................ GATACGCTTAGTCGCTGCTGCATCAAAGACAT 2724635 28 100.0 32 ............................ ACAAGTGACCATCTTAGGTTTAGAAGTCACAG 2724575 28 100.0 32 ............................ TTTGAAGGCATAGAACGCATTAATATCAGCAA 2724515 28 100.0 32 ............................ GCACTTTGGAAAAATGCTGTTACATCAGCCGT 2724455 28 100.0 32 ............................ AAACAAAGCTATCTCTTTTTGTGTGCTCTCAA 2724395 28 100.0 32 ............................ ACCAACAGCAGCACAGGATTTTATCGAACTAA 2724335 28 100.0 32 ............................ TAGTGTGGGGCTGTAGCTGTCACGTAAAGGCA 2724275 28 100.0 32 ............................ TAAAAGGTGAAGCATGGGTAATCGAGCGTCTA 2724215 28 100.0 32 ............................ CAACATCGCCTGAAACAATACTACCTCGCTTG 2724155 28 100.0 32 ............................ TAATATTACTTTTGTGATCGGTTTTGGGTTGT 2724095 28 100.0 32 ............................ TCGATCAGCTTTGTTTTGCTAACTAGCGGTGA 2724035 28 100.0 32 ............................ ATTACCGATACGAGCAAATAACTGCTCAGCTT 2723975 28 100.0 32 ............................ AAGCCAAACCAGCGCTTAACGGTTCGCGACTT 2723915 28 100.0 32 ............................ AAACCTGTTGATCCCGAATGGGCGGCAACCGT 2723855 28 100.0 32 ............................ AATTAATAGGTATGTTTAGAACTAACGCTAAT 2723795 28 100.0 32 ............................ CATGCCGAGCCATTCCACCGCTTAGGTGTGTT 2723735 28 100.0 32 ............................ TAATGAAGTACCTCCTGTAAATGGGGTTAAGC 2723675 28 100.0 32 ............................ AGCCCATGATCGATAGCATGTTAGCGAATTTT 2723615 28 100.0 32 ............................ GATTAGCGTGTAGGCCATTGCGATACCGCTTA 2723555 28 100.0 32 ............................ AATAACTTGTTATAGTGACGGCTAAGGTTAGA 2723495 28 100.0 32 ............................ ATCAACCATAACCGCACCGCTTACAGCAATAT 2723435 28 100.0 32 ............................ TAAGTAAGCCATTGCGAACCGATGCAATGACT 2723375 28 100.0 32 ............................ TCGCTCAGGCTGAACCGTTGGACATGACCGAT 2723315 28 100.0 32 ............................ GCAGGACTTTGAGTAGCGCTTGTCGGCTGGCT 2723255 28 100.0 32 ............................ CGTGCAATCTAGTAGGTTCGCTGGCGAGTAAC 2723195 28 100.0 32 ............................ TCGCTGGCTCGCTAAGAACCGATTAGCGTGTA 2723135 28 100.0 32 ............................ GAAGTGCTTCGTCAGAAAGCAGGGTCTGTGAA 2723075 28 100.0 32 ............................ TATTCTCAATTTGCTAATGATAAGCGATATGG 2723015 28 100.0 32 ............................ AATTGCAGCCGTACCAGCCGCTGCCATGGTTG 2722955 28 100.0 32 ............................ TCGCTAGTTGATAGATTTTCTATCATGGTTCT 2722895 28 100.0 32 ............................ TTGCGCTACGGTCGTTACTGCACCGCCAAAAC 2722835 28 100.0 32 ............................ CAAAGACCCTGTTTACACTTTTAGCCGCGCTA 2722775 28 100.0 32 ............................ TGAAACGCCACTACCGCCCTCGCACCAACAAG 2722715 28 100.0 32 ............................ TAACCAGTAGGTCAACGTGGGATCGGACAGCG 2722655 28 100.0 32 ............................ ATTCCAGCCTGCCCGCTGCATACGCTCGCCCA 2722595 28 100.0 32 ............................ TAAAGGGTGGCGCTACTTGCTGCCAGTACGGA 2722535 28 100.0 33 ............................ AGTAATCGGATTATATACCCTACTAACATCAGC 2722474 28 100.0 32 ............................ AACATAAGGCGGAGTATTGGCCACATTAACGG 2722414 28 100.0 32 ............................ AGTCACAATAGTGGGTGGTGAGTACACAATGC 2722354 28 100.0 32 ............................ AAAGCATAGTAATGAGTTGGCGGGTTACGCTA 2722294 28 100.0 32 ............................ TGGCAAATGGACATGGGCGCAACTGCTGACAA 2722234 28 100.0 32 ............................ TGTACTTGCGTCATCACCAACAATGATTAGAA 2722174 28 100.0 32 ............................ GTAAACATAGAAAAAGCCGCTAACTTGAGAGT 2722114 28 100.0 32 ............................ TACAGCCGTTGCAGTTGGTAAAGAGATTGTAA 2722054 28 100.0 32 ............................ TACAGCCGTTGCAGTTGGTAAAGAGATTGTAA 2721994 28 100.0 32 ............................ GAACGCTGTTAGTATTAAAATGAGTGCTGAAA 2721934 28 100.0 32 ............................ CTCACCAGAAGAGACCGCAAAAGCTAAAATAG 2721874 28 100.0 32 ............................ TGTTTAATTGCTTCTTAATCATATTTTTTTCA 2721814 28 100.0 32 ............................ ATTTGTGATTATCCACGGTAAGCCATGCAGAT 2721754 28 100.0 32 ............................ CAAAAAAAAGACGCTTGATCCAAGTCGTGAGC 2721694 28 92.9 0 ..........................GC | T [2721668] ========== ====== ====== ====== ============================ ================================= ================== 178 28 99.9 32 CTTCATCACCGCTCAGGTGACTTAGAAA # Left flank : ATCAAAGGCATTAAGGACGTGCCTATCGATAAAACAACGGGTTATGTCAGTGTACATCGCTACCGCTTTAAACCGATAGAAGTACAAATACAATCTCTAGCCAAAAAGATGAAGATTAGTAATGACGAGGCGATGGCGATTGTTGCAAAACGCAAAGCTGAATTAAAGCTACCCTTTATCAGAATGTATAGTGAAAGCAATAAGACCCATTATCCATTGCAGATATTACAGCAGGTTAGTGAAGAGCAAGTAACCGGTCGTTTTAATGTGTATGGTATCAATGGCATGATGGATCATGTCACTGTGCCGCATTGGACTGACAAAAAATAGAACGGTAATGACGAATTACCCAAAAAAAGGGCATAAAAACCCTTTTTTTGAACTATTTAAAAACTTGCAATAAAATCAACCAGTTACATGGAGGTGAAAAATGGAGGGTAAATTAGGGTATTTTGCCCTCCACACCTTGATGTAACTGAATTTTTTGAGGTATAATTCCT # Right flank : AGCGTTTAAAAATTGCATGCCAATTTTAGCTGTGCAAGGAAAATCATTTAAATATGATTTTCAGAAGTTATGCTTCATAGCTAAATCTGTATCGGAAAATCACAGATTTCCCACTTGCGACAAGCTGATTTACTGCGCTATCGCTCCATCTTGCGTTGCTAAAACAGTTCCCCAAACTGTTTTTTAACGCGCCTCACCCCAAATACTTAGACTACCCTCGTCTCACACAATTATAGGTGACTTAGAAATGATTGATTAACTCTATCTATCCAATAGCATCATCTAATTCGTCAAACGCTATTTTAAATGTTCTAAAACTACTATCGTTTATGATAAGGACAAACTTACCGCTGCATTCTATCTTAACAAGAACTTTCAAAATTAATTTTCTTCAATTGCTTGAAGCTCAGATTTTATCGCTCTAAGACGCAATATTGGTGCGCCTAGCGGCATCTCATTAAAGACGCGCTTTATATCGCCCTTACTGTGTATACAATACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCATCACCGCTCAGGTGACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCATCACCGCTCAGGTGACTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //