Array 1 12840-11285 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDS01000003.1 Salmonella enterica subsp. enterica serovar Cerro strain BCW_2654 NODE_3_length_386981_cov_3.44313, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12839 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 12778 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 12717 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 12656 29 100.0 32 ............................. GCTCCGCAACGGTACAGAGCAAAAAAACACGC 12595 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 12534 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 12473 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 12412 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 12351 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 12290 29 100.0 32 ............................. TCGGTCGATCTGCATATCGATACCCGCGGTTA 12229 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 12168 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 12107 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 12046 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 11985 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 11924 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 11863 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 11802 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 11741 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 11680 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 11619 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 11558 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 11497 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 11436 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 11375 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 11314 29 93.1 0 A...........T................ | A [11287] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30855-29546 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDS01000003.1 Salmonella enterica subsp. enterica serovar Cerro strain BCW_2654 NODE_3_length_386981_cov_3.44313, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30854 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 30793 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 30732 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 30671 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 30610 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 30549 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 30488 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 30427 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 30366 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 30305 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 30244 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 30183 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 30122 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 30061 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 30000 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 29939 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 29878 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 29817 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 29756 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 29695 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 29634 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 29573 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //