Array 1 45393-43575 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQEN01000010.1 Neisseria meningitidis strain M37447 M37447_CHA4454A6_cleaned_ctg_8250, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45392 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 45326 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 45260 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 45194 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 45128 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 45062 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 44996 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 44930 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 44864 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 44798 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 44732 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 44666 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 44600 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 44534 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 44468 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 44402 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 44336 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 44270 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 44204 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 44138 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 44072 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 44006 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 43940 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 43874 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 43808 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 43742 36 100.0 30 .................................... CGATGTTGTGATCGCCTTCCTGCAGGCGTA 43676 36 100.0 30 .................................... CCTGTTGGTAATCCCCATTACATAAGTGAT 43610 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //