Array 1 5782-5229 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUKP01000020.1 Bacillus thuringiensis strain AFS043499 AFS043499_108_C2_Contig20_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================= ================== 5781 23 87.0 42 ..................A..TA TTCTGAGGTGTTCTGTGATTAATTTAGACATGTATGTTCAGT 5716 23 100.0 42 ....................... CTTTGGCCGTTGAACCAATTAAAAACCCGATTAAAGTTTAGT 5651 23 100.0 44 ....................... TGGGGAGAGTGCGCAAAGTGTTTTTGTAGATTAATTTGTTTAAC 5584 23 95.7 57 .......C............... ACTCCTTAAATTCCTTTCGCTACGCTCTAGTAACCACCTAACTTGTGATTGTTTAAC 5504 23 91.3 43 .G..G.................. TACTAATGGTAAAACAAAACATAGCTTTAATGCATGATTTGAC 5438 23 100.0 43 ....................... TTTTATGCTCATCGCATAATTCAAGATGAAAAGGCGGTTTAAT 5372 23 95.7 31 ..C.................... TCGGTTTGGCATGAGCCATACAGAAGCTGAA Deletion [5319] 5318 23 87.0 44 .AG..T................. ACTAGCCTATCTTAAAGTATTACTACCCTCTATATCAGTTTAAG 5251 23 91.3 0 .............A......C.. | ========== ====== ====== ====== ======================= ========================================================= ================== 9 23 94.2 43 ACTAACATAAGATGTATTTAAAT # Left flank : TGTAGTCAATGCGGATATATTTGTAAAGAAAATCGTTGTACACAAGCGGTTTTTGAATGTAAGCAGTGTGGATATAAAACACATGCTGATTATAATGCGGCCAAAAACATTGCTACTTATGACATCGAAAATATTATAAATAAACAATTAGCGGTACAAAGCAAATTACATTCAAAAAAATGTATGGAAGAGTATATAGAAGAGTTAGGATACCTGGATTAATGTAGATAATTGAGTTCATATTAAATAATTTGGTGGATTTACACGCCATAAATGGAGAAGTAGCACATAAGAAATTTACCAAGTGCCAACACTCCGTAAGGTAGTATCGAATGTAAATAAACATTGATGCGTGGGCATTTTTCATGCTCTGAAGGGTGTAACACAAAAACCGTTACACGATACATCTAGTTGTTGGTAAAATAATGTTTAATGTTCATCTTACCAGGTTATTTTTCGTATCTGTTAAAGTATCTATCTTTATTTTATCGGGGTTTAGT # Right flank : GTGTTTACCCAAAGTATTAAACTAAGTTAAGAATGTATACTGATCCCCTTCACAGATTGTGAAGGGATTTTTATTCGAAAGATGAGTTTTACAAAAGATACAAAATGTTAAACTCATTAAAACCAGTGATATCATGCGTTTTTCTATGGTATTACTGGTTTTTTTCGCTATAAAATGAAAAGAAAAAGATTGTCAGTTTAACAAATTATAGTTATAGTTAAACTAAGTTTTACATATTATAGCTTACAACAGAGTTTTAGGAGGTCATGTTTTATGACGAAAGGGGGACGAAAACCTGGGGCAAAAGAGCCAATTCGTTCAATAGAAAAAATTGAAGAAATGAAAGATTGGCTATTGCAAAATTCCTCATATCGAAATTACTTTTTATTTTATTTTGGAATTAACACAGGTTTACGCATTAGTGATATTTTACGATTGCGTGTAAAAGATGTTCGAGGAAAACATGTTATAAAAATTAAAATGGAAAAAACAGATACAAC # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 53672-53248 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUKP01000017.1 Bacillus thuringiensis strain AFS043499 AFS043499_108_C2_Contig17_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 53671 32 84.4 34 ......T..CT.GC.................. AACCAATCGAATATAAACGTGGGAAACCGAAAAA 53605 32 100.0 34 ................................ GTGACGGATATAGAGACAGGTGAAAAAACAAAAA 53539 32 96.9 33 ...................T............ CTTAAAGAATACTATGAAATTGAAAGAAGTACA GT [53521] 53472 32 100.0 34 ................................ TTTAATACGGCTAAAGATTTACTAGCTGGATTAA 53406 32 96.9 30 ....................A........... AGTAGACAGAAGATGAAAGAAGATTTCTTT 53344 32 90.6 33 ...A...............G......C..... CCATTAACAAAAATATAAAAAGCATACGTGCCG 53279 32 71.9 0 ....T....C.......C.....AG..AGG.C | ========== ====== ====== ====== ================================ ================================== ================== 7 32 91.5 33 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACGCAATTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTATACTGTTTGAAAATGATGCATCAGCAGCACGACCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGATCATAAATCAAAAATTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATCGATGATTATACTGTATTGGTACATGAATTAGATGATTTAAAAGTTGAGGTTATTAATGGAATGTAATAAAAAGCGTCAGAATAGTTGAACGAAAGTATCCTTATAAAGATATACTTTATCAATTTATTAAAGGAAA # Right flank : TGGTAATATGCTTGATAGTAATTTAGTGTCTCTGCTGGAGTAAGAAGAACTGCTTCAATTCATACAGCAACTAGTGTTGATTCAATTGACATTACTAGTATGCAGATTATGAAAAGTATAAATTTTGAGCCTGAGAAGGATAAAGGTTCAGATACGATGGGATGAAGCATCGTGTTGATCTTGGAGCTTATATTTTTTACGGAAGTATTCATATGCAATGAGTAAGAAATACAGATTTTACCAAAGGTGATGCGGAAAATATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGTATCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGCTTGTTGGTGGAAGCATAATTCAAAACTTGGCCAGTACCATTCCGTAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTAACGAACCAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATAGTTTAAAAGTGACGATTATTGATGGAC # Questionable array : NO Score: 8.39 # Score Detail : 1:0, 2:3, 3:3, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.70,-2.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //