Array 1 427807-428932 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTZ01000002.1 Salmonella enterica subsp. enterica serovar Braenderup strain 15 NODE_2_length_679889_cov_29.2047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 427807 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 427868 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 427929 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 427990 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 428051 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 428112 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 428173 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 428234 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 428295 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 428356 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 428417 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 428478 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 428539 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 428600 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 428661 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 428722 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 428783 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 428844 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 428905 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 445191-447297 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTZ01000002.1 Salmonella enterica subsp. enterica serovar Braenderup strain 15 NODE_2_length_679889_cov_29.2047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 445191 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 445252 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 445313 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 445374 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 445436 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 445497 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 445558 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 445619 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 445680 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 445741 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 445802 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 445863 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 445924 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 445985 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 446046 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 446107 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 446169 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 446230 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 446292 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 446353 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 446414 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 446475 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 446536 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 446597 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 446658 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 446719 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 446780 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 446841 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 446902 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 446963 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 447024 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 447085 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 447146 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 447207 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 447268 29 89.7 0 A...........TC............... | A [447294] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //