Array 1 92113-90223 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHKH01000017.1 Paenibacillus dendritiformis C454 PDENDC1000017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 92112 32 100.0 36 ................................ ATATAAACAACTCGCAAACAAGACCGCGTTGTTCCA 92044 32 100.0 33 ................................ GCTTGTGAGCCTGGGGAAGAGGTCGGGACGACA 91979 32 100.0 35 ................................ ATCCGGGTCATTGAGTCGCTGATTCCGCGACCAAT 91912 32 100.0 35 ................................ TGGGAGTTACGGTCCGCTAAAGACGAAAAGTCAGC 91845 32 100.0 34 ................................ GACTTACAGCATCACAGACATCACGCAAATAAAC 91779 32 100.0 34 ................................ GCAACCTACACGGCAGCCAAGCGCTTCACCTACA 91713 32 100.0 35 ................................ GAGCGAAAAAAGGGTGACAAGTACGTACACCGATA 91646 32 100.0 36 ................................ TTAAAATCACACTCTGCGAACTATCATTCACGGGCC 91578 32 100.0 33 ................................ TCAATTTCAATTATCAGTTCTTCGAGGTTAAAC 91513 32 100.0 34 ................................ TTCGATTGGTCACACCCCCGAACGTCCCATACAA 91447 32 100.0 33 ................................ TCATCAACCTCGCGGAGCTTGTCGGCGAGTGCC 91382 32 100.0 35 ................................ TCGCGCTGCGCATCGGCCAAAATCTCTCCGGCCGC 91315 32 100.0 33 ................................ CCGGATTTCGTAGATATCACGCTTGATTTCTAA 91250 32 100.0 34 ................................ ATGATTTCGGCGTGCAGCACGTCATGCAGTGCCG 91184 32 100.0 33 ................................ CGTACATCCCCAGCGCGGATAATGTATTCTTTC 91119 32 100.0 36 ................................ GCTTCGGTCGCTCTCCGTTCCGGTATCCCGTCCGCT 91051 32 96.9 35 ..T............................. ATTTTTACAGTCGTTTGCTCCCATGGCTCGCAAGC 90984 32 96.9 36 ..............A................. CTTTTTTGTATACTCGGTTAGGAGAATCCGTGTATG 90916 32 100.0 34 ................................ CCGCCATCCGACCGTCGTCTTGCCATCAGCCACT 90850 32 100.0 35 ................................ GTCCAAGCAGATGATAGAAGACGGCTGCTGTGCCA 90783 32 96.9 35 .............T.................. TGGTACTTTGATGCGTTGATCACATACATGGCATT 90716 32 96.9 34 ..........C..................... TTTCAGTGTCTCAATACTGTGTACTCTTGCCATT 90650 32 96.9 34 ..........C..................... GCCGGAACAGCCGTGCAAACCGAATTGCACGAAA 90584 32 100.0 34 ................................ TTTGCTGTCTTTACAAAGGACACCCTGACGTTCA 90518 32 100.0 34 ................................ CTTGTGGGGCGGATCTTGACGCTCCATAATAACC 90452 32 96.9 35 .....................C.......... ATAGAATCATCAACTTCAAGTAGAAAACAGCTTAC 90385 32 96.9 33 ..............A................. ATGATAGTTGCGGTATCGGTGGGTGTATTTGTC 90320 32 100.0 35 ................................ CCGAAGGTGGTCAAGCTCGACACCAAGGGCGAGGC 90253 31 75.0 0 ...........T......AT.AA-...A..G. | ========== ====== ====== ====== ================================ ==================================== ================== 29 32 98.4 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CTGGAAGTAGGTGGTATAATTGTTGGTACTAATCACTTATGATGTCAGCACGACCAGCATTGCCGGGCAGCGCAGGTTACGTAAAGTCGCAAAGTTATGCCAAAATTATGGTCAGAGAGTGCAAAACTCTGTTTTTGAATGCAATGTAGACGCAGCTCAATTCGCCAGCTTGAAGATCCAACTTATCGATATGATTGATGAAAAGGAAGACAGCCTGCGATTTTATCAATTAGGAAACAACTACAAAAGCAAGGTGGAGCATATTGGCGTGAAGGCATCGATCGATATGGAAGGGACCCTAATTTTCTAGTGCGAATGTGTAGTGCACATGAAATCCCCGGGGGATTCGCACCACGGTTTTTCTATATTATGGGTAAGTTTTATTTTTTAGGTTGTTGTTGGAGAGGGGAAATAAGCTGCTTTTAGAGCTATGGAGTGGATATTTTGATTGATTCCGTCATATCAAGAGTGAAATATGATTATTGCAATCATTTTTCGCT # Right flank : TAAAAGAGGAGGATAGTAAAATGAAAGCGATGCTAGACAAGTATAAAGGATGCCTAGTCGGGCTGGCTGCAGGAGACGCGTTAGAGACTACGGTGGAATTCCGTTCCCCGGGAACTTTTGTTCCGGTAACGGATATGGTGGGAGGCGGCGTATTTCATCTGCAGCCCGGTCAGTGGACGGACGATACTTAGATGGCGCTCTGTTTGGCAGAGAGTTTGCTCGCTATGAAGGGATTTGATCCGTCGATCAGATGAGAAGATACAAAGAATGGATGCGAGAAGGGTATATGAGCAGCACGGGAGAATGCTTTGATGTAGGCAACGCGACACGTGAAGCCATCCTGCGGCATGAAAGTACGGGGGAAAGCTACTGTGGATCCGATAATCCCATCGCTGCTGGCAACGGGTCTATTATGAGACTGGCCCCAATCCCGATGTATTATGCAGAGCAGCCGAGGTTGGCAATGCTCTATGCTGCAGCAAGCTCCAGGACGACCCATG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 105065-103830 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHKH01000017.1 Paenibacillus dendritiformis C454 PDENDC1000017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 105064 32 100.0 37 ................................ CGAAGCTGGACTTTGAACACGGACGAGAAATCGACAT 104995 32 100.0 33 ................................ TTTCATGTCAGGCTCTGTATTCGGTGACCAACG 104930 32 100.0 36 ................................ AGGAGGCCGGATTGAGTGATATTGCGCTTTATGTAC 104862 32 100.0 33 ................................ CTAGCCTACCCTCTTGGATGGCTTGTAGCTCTG 104797 32 100.0 35 ................................ ACGCATGGTATCTATGTTTGCTTTAGCTAATCATT 104730 32 100.0 35 ................................ GCAAGCGACTATTCCTAATCGCTCGCTGCGACGGT 104663 32 100.0 34 ................................ CGATTACATCATGAAGTTCAGCAGTCGTGGTCGT 104597 32 100.0 34 ................................ TTTTTGAACATTGCCTTCGCAATGATTACCTTTG 104531 32 96.9 36 ......C......................... AAAATGAATCGCTCCTCTCGCGAACTAACTCACTTC 104463 32 100.0 36 ................................ AAGTAAAGAAGCCAAGGCCCCAATAAAGCACGCAAA 104395 32 100.0 34 ................................ AAAATCAATCCTGGAACAACGAGCGTAAGCAAAA 104329 32 100.0 35 ................................ ACCCAGGAGCCCGAAAAGGTAATGAAAGCCGTCAG 104262 32 100.0 36 ................................ ACGTCAAATCGTACATATGTTTGTTTGCGTATACCC 104194 32 100.0 35 ................................ TCTGATAAGTATAGATGCTTACCCATGTTTCAATA 104127 32 100.0 35 ................................ CTGGGGATTAGTATCGCAATGAATGAAGCAGTGTC 104060 32 100.0 37 ................................ TTCCGGGCCGCAAGCGCCCAGTGGAAGTACGGGCCCG 103991 32 100.0 33 ................................ CCATAGCCTTTGAAATAACCGGCATTCACCGGA 103926 32 90.6 33 ........T..G.......T............ GGCCAGCACACGTATGTGCCCGGGTCGTTCGCC 103861 32 93.8 0 ..............T.........G....... | ========== ====== ====== ====== ================================ ===================================== ================== 19 32 99.0 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GAGGGAGCATAGTTGGTATGGGGAGTTGCGGTGACCTCGTTCGAACGGGTGGAGCCTTGGGACAGGAGTCCTTTGCCGCTCCTGTCGGCATGGTTCGAGGATGAGGAAGCGAGTGCGGGAACGAATGGACGGGATATTTCGGTTGGAAATGGTTCGGTAACACGTTGAGCAATGACCCTGTAGAATGCGCATTAATGCGCGAAGTGATGAATCGTTGTATATACGGACTCGAAGGGCACTATATTACGAAACTGCAAAATGTGGTAACTTATATATAATAGATTTAACGATAGAGAAGCCCCCAAGTTCTAGTGCGAATGTATAGTGCACATGAATTTCCCGGGGGATTCGCACCATAAAATTTCTATATTATAGGAAAAATCCATTTTGTGGTTTGCGACAAAGGTGAGAAACGACCTGCTTTAGATTGATTTTATAGCTAATTTGATTTGTTTAATCATAACAAGAACGAAAAATGATTGGAACAATCATTTTTCGCT # Right flank : CGCGCCTTGAGAGACAGAGTACTTGCGACTATTCGTCGTATCCAAAACATATGAAACCCAAAAAAGCATCCTACCCCCGTATCAAAAGATGACGCGGGGGCAGGATGCTTGTCTTTTTTATAGAACACATGTTCCCTGACAGACTGTTGTCACTTTCTTTACCCATAATAGAATTTATAGTATTAGTACGAAGGAAGGTGAGGATGTACGCAGCTATGAATACGACAGTTAGCGAGCAGCAACAATTGCATCCAAATGTGGTGCCATATTGGCGAATTTATCGGCTTTTCTCTGCATTGAAGCGGACTGCGCTGGCAAGCATCCCGATCATCGTTTATTTGATGTGGTTGCCCCAATGGAAGTGGATCTTATATGTTGTTGCGGCCTATCTCTTGTTTCATTGGAGCAAAGACGTATTCTATATCATATATGGAGTTCGCTTCAGCTATGCCCGAAGAAGTTACGTCCTGACAACGGATGAGATTGTGATTCGGTGGGGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 58670-57912 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHKH01000004.1 Paenibacillus dendritiformis C454 PDENDC1000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 58669 32 96.9 33 ...........T.................... AAATTTGTTGGGCGAGGAACATTAAGAGTTCCG 58604 32 96.9 33 ...........T.................... GTAAAATGGTAGTTTTATATGATAAATAACCTT 58539 32 100.0 34 ................................ CCCATAAAACGATTGTAATACCTATAAGGCAGGT 58473 32 100.0 35 ................................ GAACAATTTCTTGATGTCGCCCAGCAGCCTAGCAG 58406 32 100.0 34 ................................ TTGTTATATGCCCATACTACCCGTTCGGTACGCT 58340 32 100.0 34 ................................ AGCACGGAAGAGTACAAGAGGGCGTTTTTCATTC 58274 32 100.0 33 ................................ CCTATGGAACAGCGAGTAACGCGAGAACCTTAC 58209 32 100.0 34 ................................ TTGACCCAAATAAACGCAGCCGTCTTGTATTCGA 58143 32 100.0 33 ................................ CTCTAATCCAGATTTCAATATGACAGTACTCAC 58078 32 100.0 33 ................................ TGCTGCTGCATGGACTGGCTGAATTGCTTATCC 58013 32 100.0 38 ................................ CGCAGTCTCACGATATCGTCCAAGCATCGCGCATAATC 57943 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 12 32 99.5 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ATTCATCTGGCTTACCGTTGAGTCGAATGGCAGCCCCCATGAGCCGATTCCTCGTCAGAGCCAGCGGCACTGACATATTGCCCGAACATAGCCCCGTGTCGCTAGGCCCCGGGCCAACAACCGGGGCTTCCCCTCACGTTAGCAACACGCCCTCAAGGGACTTTCCGTGAACGCAACGGCCATTACCTTATCACGTTGGCCCATGATATACTGAATGAGAGAACAAGTTCAAAGAATTCAACAGAACGAGTGGGAGATTCAGCCCTTTGCCCCGTCGAGGAGAGCGGAGTTGTACAAATTGATGATAGGGTGCAACTGCTGGTGCGAATGTATAGTGCACATGAAATCCCCGGGACATTCGCACCATGATTATTACATAATTATCCAAATGTATTGAAGAATAGCTATAGTATTAATGTAAATTTGGTTGCTATTTTCATTTTCTGAATAATTCAATCATATTTTAAATGGATATTTGACACATTCAGTCAATTTTCGCT # Right flank : ATACGCACAGGAAACGGTAAATGGCTGTTTTTATACAAACGTGGTCGTCACACTCAAATGTTATGGGAACAAAAAAGAGCCGTTTCAAAATGAAACGACCCATAAATAAATCAATGGGATTGTTCCCTTAACTTTGCGATAATATCTACAGGGAAGCCTGTTACCCTCGCGATCAATTCAGGATCCAGATCTTCGGCAATCATTTGCTTGACAACTTCTTCTTTGGCTTCACGCTTGCCTTCTTGTTTGCCTTCGCGTCTGCCCTCACGCTTAATGGCATCCAAGGTTTTTTCAAGCCCCATAACCGATACGCCTCCTTTTACGTTCTGGATAAGCTCGCGCAAATGCGGTTCATTTTCCGGCAATTTCTGACTTAATATATTCGCCATCCAGGCGACCAATTGCTGCTGGCTTTCCTCTGGTAATTGCTGTATGGTATGCATCAGCTTGCCGAGCCGATTCAGTAATTCCGTCTTATCCGCCGTCTGATCAAGCAAAAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1107-1733 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHKH01000169.1 Paenibacillus dendritiformis C454 PDENDC1000169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1107 32 100.0 34 ................................ GCGTTGGCCTTGAGGAGATTTCCTAGTTTCGCAT 1173 32 100.0 33 ................................ TTATTATTCGAATACTTGAAAACGTTGATCCCC 1238 32 100.0 34 ................................ ATCGAACCATTTGCGGATGTACCCCTCATATTCC 1304 32 100.0 34 ................................ ATGAATGTCAATGGTGCTCAAACAGGAACAATGC 1370 32 100.0 34 ................................ AGTGGCTTTGTCGTGCAGAGCAAAAACCAAGCAT 1436 32 100.0 35 ................................ TTAAATTGTGGATGATGTGCCTGCTAAAAGCTGCT 1503 32 96.9 35 ...........T.................... CCCCTGACCACGCCCGAGCGAAACAGAGGGTATGA 1570 32 96.9 34 ..............................T. GAAGGGGCTTGTCTTTAAAATTGGTGACCAATGG 1636 32 93.8 34 ............C..................A CCCATCCGTATAAATTTCAATGGCGGCATTTGAG 1702 32 93.8 0 ....................C..........C | ========== ====== ====== ====== ================================ =================================== ================== 10 32 98.1 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CAGGAAGCGATATGACGTATCGTGACGGTAATGAATCGATTGGTGTTCGTCGGATTCCGTTCCCATCTCTGCCCCTCCTTCCTGCCATCTTTTCCTTTATTATACCTGATTATAAGCGGTGGGGAACAGGGGGGAATCCGGTCGAGTCTATGCTGTATAGCCATTCCACTGGAGTTTCTGACTGGTCGGGATTCATTTTTTCGCTAACGCGAATTCTGCATGAGTTAGTCTGAAATTATCCATCATTTAGCTCCCCCTGTGGTATACTGAAAAGGAGTTTAGAGCCTATTTGAAATGGAGTAAAAATAAATGAATAATCGGTGCGAATGTGAAGTGCACATGAAATCCCTGGGGGATTCGCACCAAAATTATTGCAATGTTATCCAATTCAGTTTGTGAAAGTTAATTAGTTTAAAGCTATTTCAAGCTAAATCTCTCATTTGCCTCGAAATTTTAGCGAAAAATTGATTGTATTGTTATAATTTATGTAATTTTTCGGT # Right flank : GAAACGGGCCTTCGGCCTTGCGGCAAAGTTGAAAACGTTTCCGATGCGCCACAAAAGCAAATTTTCTATGACAAACCCGATTGTGATGAGGCTATCCCATAGGAAGTGCGCAAGGATGCGGGGCAAGACGGGATGTACAGATAAGAGAGTGGCAGGAAGACGGCGGACGGCAAAGCGGCGGAATAGGGACGGGTTTAGACGAGGTTGTGAGACGGAGCTGGTGAAATGAAAATCCTGCATGAATCAGGCTGTTGAGAAAGTCCAAGGGGTTTTTTGGCACTTCATTTTTTATGTAGGTGGATCACGTCTCTCCGTAGAAAAATCGATTTAAAACACTGTGCTT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //