Array 1 217765-215550 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ970569.1 Streptococcus gallolyticus strain DD03 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 217764 36 100.0 30 .................................... AACCCAATTGAACTTCACAATATTATTGAT 217698 36 97.2 30 ......A............................. GAGCAACTAAGAATAAAAGTGAAGCTGAAA 217632 36 100.0 30 .................................... AATCAAGTGATGAGATTAGTCTTTTACAAG 217566 36 100.0 30 .................................... AACGTCGACGTCTAAACGTAAACTCGCCAA 217500 36 100.0 30 .................................... TTCAATATATTCTTTTACCACGCGCCTATT 217434 36 100.0 30 .................................... CAAACTAACTTATAACCAAAAGACCTTAAC 217368 36 100.0 30 .................................... AAATGATGAGTGGTTAAGAATCCATATTAT 217302 36 100.0 30 .................................... GCAGATGGATTAGTGATAATTCTGAAACAT 217236 36 100.0 30 .................................... TGGCACACAATATTGTTTTAACGTGCTGGA 217170 36 100.0 30 .................................... TACCGTTCCTAAGTAGTTTGGTGGGTCACT 217104 36 100.0 30 .................................... AACAAAGTAACTGCTTGTTTCAAATCACCA 217038 36 100.0 30 .................................... CGTATGGGTTAGGTGGCAACCAATAAGATG 216972 36 100.0 30 .................................... ATACCTCAACACCTAAAAAGCGCCTGTCGC 216906 36 100.0 30 .................................... GCTGTTCCAAGTGCTTGAATTCTTCTAATT 216840 36 100.0 30 .................................... GCTGGTCGGTTAGCGAAAAAAACAGGTATG 216774 36 100.0 30 .................................... TTAGAATGATATGTCCTAATTCATGGCATT 216708 36 100.0 31 .................................... AATGTGATGCTAACTATTATAAGTTCAATGG 216641 36 100.0 30 .................................... CATTTAAACCTTCGTTCTTCACACCAACGC 216575 36 100.0 30 .................................... GAGCACTAAAGAAAGTTAAATACCGTTTAT 216509 36 100.0 30 .................................... ACAAAAACCACGAACTGTTTTACGTCAAAA 216443 36 100.0 30 .................................... TTTAAACCAAGGTTTGACACAAGAGCAATT 216377 36 100.0 30 .................................... TATTACTCAATTAGACTGTACTCAATTAGA 216311 36 100.0 30 .................................... AGATTTGTTAAAAATTAAGGCTACTCCTAT 216245 36 100.0 30 .................................... GTTTAGTGAGAGCAATCTCACTATCTAGTC 216179 36 100.0 30 .................................... TCCCACTCAGTCCATTTATTAAGTAATTTA 216113 36 100.0 30 .................................... AACAAATGGAGCTTAACTTGGCTTAGAAAG 216047 36 100.0 30 .................................... ATACAATTAAAGCTTATTTTAATCAGAGGT 215981 36 100.0 30 .................................... CCGGAAGCTTTATCAGCTAAAGTTAACGGA 215915 36 100.0 30 .................................... CAGCACCTGTGAATGGTGTGTTAATGCCTT 215849 36 100.0 30 .................................... TAAAAGATCATATTGATACTGTCAAAGAGA 215783 36 100.0 30 .................................... TGAAGAAACTGAAAAAGAGTTAAACGTTTA 215717 36 100.0 30 .................................... GCATTTCCAAGCGTATAGTTAAACCAGAGC 215651 36 100.0 30 .................................... AGTTCATTTGCATAAGGTTAGGTTTAACAT 215585 36 83.3 0 ............................TT.TGT.T | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.4 30 GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Left flank : GGATGACTATCTTGATTATTCTTCTTTCATAACTATTTGTAAGACTATTACGCAAATGACTGAGAAATTTCCTAATTTTTATTGCACAATTTTCCCGTCAAATGAAAGTTATTTATACGTTACTAAAGAAACAATTGAACATGTTACCATTGTTTCAGACTTTATTGAATCATTGTTTGACTTGGATTTTATGTATGAAAGATTTATTGGTAGATACCCATCAAATAATATTCCAAGTAAAAGTGAGTTTTTGATATTACTTCAGAAAAATGCAAGTTATCTGTTTAGTGATCAGATTTCATATATTAGTTTAGGAATTCCAGATATGGTAGCCATCAAGATTTTAAATAGTTTATACCATTATGATAAGTCTGTTGTATATCCAATACCTAAGATAGAACCGCTAGAAATAAGCTTTTTAAAGGACAGAGATTGACTTTTTTGCCTAATCAAACTATAATCGGTTTGTAGGATACAAAAACTAAAAATGACGATTTGAG # Right flank : TTATTATTTAAAATCATTCGAAAGGGATTTTATGACTCCCAAAATTTTCTTTGGTGAGTGGTATGAGGATGAAAAAAACTGATAGCGCTTTCATCGAGGTTACAGGAATCTCTAGTGTTATTGTGGATATGAAAGTATTCCTGATAGCATCAAATCAATGATTTTCACTGCTCAACAAGGTAACGGAGAAGGTTTATACAATTACGTTGAACTTATCAATCCCGCCCCATTTTTGAATAGTAAATTTGCTGACAATTATGAGTTAAACGGGTATAACATTAAATAATTGATTCTTGATGCGTATGCCAAACAAGATATTAAGCACTGAGGGCGCTCAGGGTGTTTTTAGATGAAATCATTTTATAATATTTAACCTTTTTAGCATCTTATGATGCTTTTTTCTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAATAATGATTAATTGTATAGGATTGTAAGATGGATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //