Array 1 3923156-3922333 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019458.1 Streptomyces autolyticus strain CGMCC0516 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 3923155 33 93.9 28 ..............................TG. TCAAGGACGCCTCGGACAGCAAGGGGCT 3923094 33 93.9 28 .............................C.A. CCACGACCAACTCTCCTGGGTCCTCCTC 3923033 33 100.0 28 ................................. CCGATCTCTCAGGAGATCGCGGAGTGGC 3922972 33 87.9 28 ................T............C.CA CCGTGTCCTGTCGGTAAACCATCCCCCG 3922911 33 87.9 28 ................T............AGG. GGAATAGAGAATGGCAGAGCATGTTTCC 3922850 33 93.9 27 ................T..............A. GACCACACATCCACCTCCTCCCACGAC C [3922821] 3922789 33 87.9 28 ................T............A.CA TGGGCTCCCAGATCACCTCCGGGGCCCG 3922728 33 90.9 27 ................T..............CC GGGTGGTTGCCCGCAGCGGGTCCAGTG T [3922699] 3922667 33 87.9 28 ................T.............GAC AGCCGTCTGCTGGACAGGTCGCCCGATC 3922606 33 90.9 28 ..T............................CC CGTGGGGCCGCGCCGAAGACGGGCGGCC 3922545 33 90.9 28 ...........G.................C.G. GTCCGGCCAGGCCGACGGCGGGGGTGCG 3922484 33 84.8 28 .......T.....................ATCC GTCACCTGTTCCACCGCCGTTGGACCAC 3922423 31 81.8 28 ..............A.--..........A.AG. AGGCAGCCGTCAACGCCGGTGCCTTCCT 3922364 32 84.8 0 ........-....T..T.............GA. | ========== ====== ====== ====== ================================= ============================ ================== 14 33 89.8 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGGCTG # Left flank : CTTGCCGATGTCGTGCAACCCGGCACACAGCCCGACCAGAGCCCGGGCACGCTCCGGTTCGCCCCCTAGCCCCATCCCCTCGGCAATCCGGACCCGCTGGTTCTCCGACAGATAGACATCCCACAGATGCAACGCCATCGCCGCCGCATCAAGGAGATGCCTCACCAGCGGATACGGAGGCCGCTCCGGATCCAGGCCCCGCGACTTCCCCCACGCCGACTCATCTAACGCATCTTGCTTGCGCATCATGACGTCTTCCTCCCACTTCAGCACTGGCTCGCGTCCCGCCACACGGTGGGAGGTCGCCCCGCCGACTGATCCAAGCACTCACCACTGACACCTTGACTCGCCTGCTGTCATCCGACGGCCTCGCCATCGAGCGTTGCCCTCCCCGAGCGTGCCCCGGATAAAGTGGGCATCGTGCAGCCCCTGGAGCGTTTCACCTCATCCGACATGGCAAAGAACAAGCAAAGTCGTTTCTAAGTCGCAGGTCAGAAAGG # Right flank : CCAAGCCGGGCGGCGATGGCCCCCGACCGCGTTGGCCGGGGGCTTCGAGATTCATTCAGCCGAGGTACTCGACCTGGAGGACGGTGAGCTCCTTGAGGCCGTTGCCTATGAGGAGGATCGCGAGGACGTCACGGGTGAGGATCTTGCGCATGACGCCGTCGTCCACGAGCCCGTAGCGTTTTGGTTGCCGCGATGGGGTCCTCGCACGCGTCGGCGAGGGCAAGGGTGAGTTGTTCCCTCGCTTCGGGTGGCAACGCGTCGTGGACGGCCCTGGCAGCAGCGTCGTACTTGAGGCGATACACCGGTGTTATGGTCCTTCGCGTCCATGCGCATGTGATGCGCGTTATCGATCTGCCAGCCCCCTTTGGGAAGCGTAGTCGATCTGACGCGGAGCGTAACCTGATTGTGGGATTAGGCGGCGCCGTAGCCCCGGATCTGCTCGGCTTCCCGCTGAATGCGCTCTGTGGCGTCTACCCATTCCCCCAGGGGCTCTTCGTCGC # Questionable array : NO Score: 3.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:-1.5, 6:0.25, 7:-0.01, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGGCTG # Alternate repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3933073-3936240 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019458.1 Streptomyces autolyticus strain CGMCC0516 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================= ================== 3933073 28 100.0 33 ............................ CTGGTGCAGGCGGGCATTCTTCCTGCCGAGTCG 3933134 28 100.0 33 ............................ CATTCGGCAGAAGGCGCAGGCGCCCAGCGCTGG 3933195 28 100.0 33 ............................ ACAGCCGCCACCTACACACGCGACCTCGCCGAG 3933256 28 96.4 33 .......T.................... CCTCCGCGGTGACCGTACCGAGACCCCACAGGG 3933317 28 100.0 33 ............................ ACAGCGGCGAGAGCGTTCAGAACGGTCATGGTG 3933378 28 100.0 33 ............................ GAGCCGTTCGTGCCCCACATCAGCACCGAGCAG 3933439 28 100.0 33 ............................ AAGACATGACCGTCCCAGGGGAGCGGAAGCCGG 3933500 28 100.0 33 ............................ CCGCCTGTGCCCGAGCCGACGCCGGAACAGGTG 3933561 28 100.0 33 ............................ CTCGTGCTGGACGTCCGGCGTGGGGAGTTCTAG 3933622 28 100.0 33 ............................ ACCTGGCCCGCGTCGCGCCCGAACCCGCTGTCG 3933683 28 100.0 33 ............................ TCGGGCATCGGTTCACCTCTACTGGTTGCGGGG 3933744 28 100.0 33 ............................ CACTCTCCGGCTGTCCCCGGGCTGGAGTGGAGG 3933805 28 100.0 33 ............................ TCGGGCATCGGTTCACCTCTACTGGTTGCGGGG 3933866 28 100.0 33 ............................ TACTCTCCGGCTGTCCCCGGGCTGGAGTGGAGG 3933927 28 100.0 33 ............................ CGCACGGCATCACGTGGACGCTGGAGCCCGTCG 3933988 28 100.0 33 ............................ CCCCGGCCCACCTGTGACCTCATGCTCGACGCG 3934049 28 96.4 33 ...........................C GACGAGCTGGCAGCGCGGCTCTACCCGGTGCCG 3934110 28 100.0 33 ............................ CATGGCGATTCCCGGCAACTTCCTCAGCTCGGG 3934171 28 96.4 33 ..T......................... TCCGCCTTCCTGGCCCATCGCAAGACCCTGCTG 3934232 28 100.0 33 ............................ CGTTCGCCGACGGCGACCTGCAGCTAGCTCTTG 3934293 27 96.4 33 .......-.................... AAGGCCGTGCGCCCCTTTCCCTGACCGTGGTTG 3934353 28 100.0 33 ............................ CCATCCGCACCGCTCTCCCCACGCCGCCCGGCG 3934414 28 100.0 33 ............................ GGCGAGGACTTCCTCTTCCGCCGTTGGGCGGGG 3934475 28 100.0 33 ............................ CGCGCTCGTCGCACCGCTCGCCAACATCCCGTG 3934536 28 100.0 33 ............................ CTGCTCCTGTGTGAGATCGCGAATGTCACGGAG 3934597 28 100.0 33 ............................ CCGGACATCTTCGCCGCGACCTACGAGCCTGTG 3934658 28 100.0 33 ............................ ACCTCGTAGACGGTCCGCACACACAGCGCGCCG 3934719 28 100.0 33 ............................ GCTGCTGTTACCTACGGATACGGCCCCCGAACG 3934780 28 100.0 33 ............................ CCTTGAAGATCGTCCTCGATCTGGCTCGTCAGG 3934841 28 100.0 33 ............................ GCCGCGACCGGGCACGCCAAGGTGACGCGGGCG 3934902 28 100.0 33 ............................ GCGGACCCCATGCTGATCGAGGCCATGGCCGGG 3934963 28 100.0 33 ............................ CTCAGCCTGCATCGCTGAGCCCCGCGTCGTACG 3935024 28 100.0 33 ............................ CTGCCCGCGTACTCGTGGGTGTCCGACCACGCG 3935085 28 100.0 33 ............................ TAGATGGCGGGCGGGGCGCTGGCCTTGGGTGCG 3935146 28 92.9 33 ....................A......C CAACGTAGGCGTCCACAAGGTCAGCTCGCTGGG 3935207 28 100.0 34 ............................ GACTTTTTCGTCGGCGGGGGGGCGGGGTGGCGTG 3935269 28 100.0 33 ............................ GTGGCCATGGGGGTTCCTCCTGGTTTAGTTGGG 3935330 28 96.4 33 ....T....................... CGGGCCCGCAGTGGGAGTGAGGGATTCGAACCG 3935391 28 96.4 33 ........T................... ACGAGCTGGACCAGGTCGGCCAGTTCTGGGAGG 3935452 27 92.9 33 ................-..........C CCTTGGGGCGGCTGATGACGCCACGCCGGTACG 3935512 28 96.4 33 ..................C......... TCCTCCTCCGCCCGGCCGTCCCCGGCCGACATG 3935573 28 100.0 33 ............................ ACGCAGGTCGCTCCGAAATCGAACGATCAGCTG 3935634 28 100.0 32 ............................ CAGGCCGGTTGGGAGGCGTACATCGGCGCCAT 3935694 28 96.4 33 G........................... AGGGCCCAGCGGTGCCCACCACCGCCGAGGCCG 3935755 28 100.0 33 ............................ TACGTCGCCGTGACCGGCAAGACTTTCCGTGAG 3935816 28 96.4 33 ..........A................. ACGAGGAGCAGTGCCCGGGTGTGGTTGAGGATG 3935877 28 96.4 33 ....................A....... CTGAGGCGGACGGTGTTGTGCTGGTTCTTCTCG 3935938 28 89.3 33 .CC..................C...... CCCTGCCGGGGGTTGTCCCGGGGGCTCCACCTG 3935999 28 85.7 65 .CC............T....A....... CCTCGTCGAAGGGCAAGGCGGACACTGTTCCGGTCCGGCCCCACGGTGGCGGCCTGATCCCGTGG 3936092 28 89.3 30 .CC............T............ TCCCAGCCGAGATGCTTGCCGCTCTGGACG 3936150 28 92.9 33 ...............T....A....... GCGTCCGCTGTGCTGGGGTTGAGCATGATGACG TT [3936155] 3936213 28 85.7 0 .CC............T.......A.... | ========== ====== ====== ====== ============================ ================================================================= ================== 52 28 97.9 34 TGGTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : CAGAACCTGCTGACCTCCGACCACACCAACACGGTCAACGCCGAGGCGGGAGAGGGCGACGAGGAGGAACGGACCGAACGCCGCGACGCCCAGATGGTTCATCTCTGGGACCCCAAAGCCGGCGTCCTGCCCGCAGGCGTCAACTACGCAGCCGGAGGCGACTGATGGCTTCCATGCTGGTGATCGCCACCACCGCCGTGCCCGACCACCTCCGAGGCGCACTCAGCCGCTGGACCAGCGAAGTCGTCCCCGGCATCTTCGTCGGCAGCGTCTCCGCCCGCGTCCGCGACCAACTCTGGCAAGCCGTCACCCAAACCGTCGGCAACGGCGCTGCCGTCCTCGTCCACCCGGCCCCCAACGAACAGGGCTACGCAATCCGAACCGCAGGCACCCGCCGCCGCGTCCCCGAGGACTTCGCCGGGCTCACCCTGATCCGCATGACCGCACCACCAAAAGTCAAGGAAATGCAAAGCCCCTCTTAAGGTGCAGGTCAGGAAGAG # Right flank : GGCGGTCTGACTGCTGATAGGAATGCGGATCGCCCGCAACGGCATGCGTAAGCCGCAGCGCCCGGCCAAGCGAATACACGACCGGCCGCTGCGGTGCGCGAGAGGAGTGCAGACGAGCAGCGCCCTTACATCAACGTGCCCTGCTCATAGCGGTCTGCCAGCGGGCCGAGCTCCCGGACTTCATCTCCCGTGACGTCCTTCCACCACTTAGCAAAAATACGGCGATGGCACTACTGCGCCGAGTCCGTCAGGTCCTCGAAACAGAGCAGGACCAGCCTGTGTTCCATCTCCGCCTCGGCTATCTCCTGTAGCCGCGCCGCGAGCCATGTCGCGCCAAGTCGGTCCAGATCCGCACGGTAGGCCGACGTGAACTCCGGCAGAGACTTGGAGAAATACTCTTTCCGAGGCGCCAGTTCCCGCACCACGTGCCTGAGCTGATAGGTGAGCCGGAAACGAGGAGCTCCCAGAGTGATACGCACCGGCACTCCCTGCGGGGGCTG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 6917809-6918301 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019458.1 Streptomyces autolyticus strain CGMCC0516 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 6917809 29 100.0 44 ............................. GACACCCACGGGCGCACCTGAGAGCCCTGAGAGCCCTTGCTTGC 6917882 29 100.0 36 ............................. TACGCTCGTGAGCGGGAGTCCGCAGCCAGCTCGAAT 6917947 29 100.0 35 ............................. ACTGGCAACGGCACTATGCCGGAGTGCGAGCCCTG 6918011 29 100.0 36 ............................. ACAAGCAGACGTACGACCAGACCCGCACGCTGACCA 6918076 29 100.0 36 ............................. ATGTCCCTGAGCAGGGCGTCAAGCATGTGGGTTCAC 6918141 29 100.0 38 ............................. CCTTGTTTCCGGAGGCGTGGGAGCTTCCGCGGCCGCTG 6918208 29 100.0 36 ............................. ACATACGTCAGTGACACATCAGCCTCCTCATCTGGC 6918273 29 93.1 0 .......................CC.... | ========== ====== ====== ====== ============================= ============================================ ================== 8 29 99.1 37 GTCCTCATCAGCCCTGGAGGGCTGGCAAC # Left flank : GCGACGACCGTCTACCACCGCACACTCAAGCGCAAAGTCAGCTACGAGGAACTCATCCACCTCGAAGCCCTCAAGATCGTCCGCCTGTGCCTCGAAGACAAGCCGTACAAGCCCTTCCGCCCCTGGTGGTGATCAGCATCTTCGTGATCCTCGTCTACGACACCGCCGTCGAACGCAACCCCAAGGTCCTCAAGACCTGCCGCAAGTACCTCCACTGGACGCAACGCAGCGTCTTCCAGGGCGAACTCTCCACTGCCCAGTACCGCGCACTCATGGCCACTTTGAACACCACCATCGACCCCGAGTACGACAGCATCGTGACCTACACAGCCAGGTCCCCGGACATGATCGAGTCCAGTACCCTCGGAGTCACCCTGGGCGGCCCCGGCGACATCCTGTGAACCGCTCTGACCTGCACAGATGCACTACCGCCGGATCGCTGCAAAACGACGCTCCCAGATGCGATGGTTTCGCTTTCTGACCTGCGACTTTACCGTCGG # Right flank : CATGACGAAGTCCGACTTGCCCTTCCGTCGGGCGGTGGTGGGTCTCATCAGCCCTGGGGGCACCGTCTTCCTCAAGCGTCCAGCGGAGGCGGCAGCGCACTCCGCGGAACTCCTTGCCGCCGCTGTCCCGCGCCACAGATCGCGCGGCGGGACCGGAACCGCCCATGGGGCGTCGCCCAAGCTGACCCGGCTGGTCTTCCTCGGCCGCACCTCGACGGAGGACAAGCAGGACCCCACCATCTCCCTTCCCCGGCAGGTGCGCTCGTGCCAGACGGCCCTCCAGCCCGGTGTTGTCATCGTCGGCTTCTACTACGACGTCGAATCCGGCCGCAAAGACCTGGCCGCGCGCGGACGCGGGCGCGGCCATGAATGCTTCGACATCCCTGTACCCCGCGACGGAGGCATCCAGGACCTCCTCACCGTCGCCGAGAGCGGCATTGAGCCGCATTTGGTTTCGTGGAGTCCTTGAAGCCAGCCTCCGCAGCCCGCAGCAACGTGCG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCAGCCCTGGAGGGCTGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.10,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //