Array 1 44424-46521 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENOG010000008.1 Listeria ivanovii subsp. londoniensis strain MF6987 MF6987_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 44424 29 100.0 37 ............................. TTTTTTGTGGACAATTTCCATTGGTGATTTGCCGAAG 44490 29 100.0 36 ............................. ATCGATACAAAGAAAATAAAAAGCATTCCGTATGTT 44555 29 100.0 37 ............................. TCAAGCCGGAAGCTGCTAGTACTTCCCCTGATTTCTC 44621 29 100.0 36 ............................. TTCATTGGCGCTAATATAAACGCAATTAATAAGACT 44686 29 100.0 37 ............................. TTTTTTAAGAACTCGGATAAAGGTTTTATGGAATTTG 44752 29 100.0 36 ............................. GTCATTTGAATCAAATTCGCATCTTCCATGATTCGG 44817 29 100.0 35 ............................. ATTGAAGAGCAATATGCTCCGGAAGAGGACTCTGG 44881 29 100.0 36 ............................. GTGATAAATGAACAAGTGAAAGCATCGGTGAAATTA 44946 29 100.0 34 ............................. TTTTCAGACTAAGACAGCGGATTTATATCATATT 45009 29 100.0 35 ............................. ATGAGTTAGAAAAGATGGGAATAAGAACAGAAATT 45073 29 100.0 35 ............................. ACATAACCTTCTAGTTGATAGTATTTTGTAACAAA 45137 29 100.0 34 ............................. AAAGAAATATGCGAGAATCTTTTGCAAATTCCTT 45200 29 100.0 35 ............................. AAAGGCTTTCCAGATTTATTCGGATTTCGCGGAAC 45264 29 100.0 36 ............................. AATTAAAAATGCTAACAAAAAACTTGCGGATATGCT 45329 29 100.0 36 ............................. AAGCTAACAATAGACATTGCGACCGCTAAAAAGACA 45394 29 100.0 36 ............................. ATAAACGAGGGGAAATAGGCAAGTAAACCCCATCAA 45459 29 100.0 35 ............................. GCGATACAAACGTTAGAAAAGTCAACGATTATTGC 45523 29 100.0 35 ............................. TTTACCTGACTGCCTACCGAAGTCCACTGCGCTGC 45587 29 100.0 36 ............................. GTCAAAGCCACTTAGCGCAATAATCTCCGGTGACTT 45652 29 100.0 37 ............................. ACCACATCCGTTTTAGTAGTTAATGCTGTTGTTGAAG 45718 29 100.0 37 ............................. ACTGGATATAAAGGTTCTTTCAAGCAAGAGAACATCA 45784 29 100.0 35 ............................. TTAGAAGGGGCAAAAATTGAAATTAGAAATTCGCA 45848 29 100.0 34 ............................. TTTATTAGTCCGCCAGTCATTGATACTAGTTTTC 45911 29 100.0 37 ............................. TCAACTATATGTTTAGTCACTTCGAACTTTTGATTAA 45977 29 100.0 35 ............................. GTTTTTAAAATAGCTACATTACTGCTACTAAGTTC 46041 29 100.0 34 ............................. GTCTGTATTGCTAGAAAAATAACTGCTCTTGATA 46104 29 100.0 34 ............................. TACCTTGCTGGGGAGCTGGATATATTGGCTTTTG 46167 29 100.0 37 ............................. TAAGTTAAATTGCTTTCAATTCGCAAATCTTTTAATT 46233 29 100.0 36 ............................. CCTCTCGTGAGTTCTATTTTTTGTCTCGCTACTTCG 46298 29 100.0 37 ............................. GAAGGATAAAATATTTTAAGAGTAGGTGAAATCCTAC 46364 29 100.0 35 ............................. AACGATTTGTGTCTTTATTTCGAAAAAGGAAATGA 46428 29 100.0 36 ............................. ACTGCAGTTGTTTTATAAGTTTTTACCTAGTCAATC 46493 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 33 29 100.0 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : ATAAAATGTCACTGTACCATCTTTCTTTTCTGTTGTTTTTGTTTTGCTCGAAGTTGAATCGTTCCCACAGCCCGCAATCAGAAGTAAAGCGCAAAACATAACCATCACTTTCAAAACATTTTTCTTCATTCTTGTTCTCCTTTTTTATAAGTATTTAGCAAAATAAAAACCCAGATAAATTAGAAAAAAGCCCAAAAGCCATCTTCCAATCTATCTAGGTTATGCCCAAATTAGGTAACATTCCTGAGTGAGTTATTTGTTTATAGAATGATTTTAGCATAGATGGTAAGCGTTTACAAGTTTATGTGTTTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATACATTGGGAGAGAATGAGAGTGGGAGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTGAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCTTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : TACTTCTGGAATATGTGGGAAGAAAGAACGAAGTCGACATTTATATCCTCTGAACGTGCAATTGTATAATAAATCGAAGGGACTTAAATATCGAAATTGATTTTGAAAATGTGGTTAATTATTGAACAGTATAATTGGCATGTGTGGAAGGGAAATTCAATACATACCAAGAGACAGATGCGTTTTTCGATGTGTGAAAATGAAAGAGTAGAAACATGGTTCTACGCAACGGATTAAACCAGATAGAAACAATTATGTCCGTTTGGAGTAAATTGAGAAATTGCAACAAAAAAACAAGGAACTAGTGCAAAATTAGTTTCTTGTTAGAGAGGGTGTCGGTTATTTTGAAGGATAGAAGTTTCTAAAGACTGCAGGTCAGTCATAATTTCTTGAACAGAACGTGTTTTTAACGAAGATTCTTCTGTATTAGATTCTTTTTCTTTCTTCTTTTTGGCTTTTTCTTCGGCTTCAATCTCAGATACATTTTTAGATTCATAGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 58020-59559 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENOG010000008.1 Listeria ivanovii subsp. londoniensis strain MF6987 MF6987_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 58020 29 100.0 39 ............................. GTTGTTGTTGCATTCTTTTTAGTTTCATACTCTACTAGG 58088 29 100.0 37 ............................. AATTTATCCGCTATCTTGCGGGCTAGGGGCTGATACG 58154 29 100.0 36 ............................. GTTTTTTTGAATGACGAAGTTGAATATAAGCATATG 58219 29 100.0 37 ............................. ATATTATCAATTAACGCCATCACGATGGCAATTATCG 58285 29 100.0 36 ............................. AGATGTTTCCTTATTCTTCCACGCTTTTTCTTTCCG 58350 29 100.0 37 ............................. GAGGCTGAGAGCTTGGCATGACTATTTGGTGACATCG 58416 29 100.0 35 ............................. ATCATATGCTGGGTATGGTAGACTTCTCATCAGAG 58480 29 100.0 35 ............................. TTCTAACAGCGAACTGCTTAATTGCTTCCTGTTCG 58544 29 100.0 37 ............................. ACATTAGTACTCAGCTTCACTTATTTGAGTTACTTGG 58610 29 100.0 37 ............................. GGTATCAACGTTCGATAGAATGATTAGATACATTGCG 58676 29 100.0 38 ............................. AAGGTATGTCGGATGCCGCACAAGTGATTAACAGTAAG 58743 29 100.0 39 ............................. CGAGAAATGGGCTAGGTTCATGGAATATTGTAGACAAGG 58811 29 100.0 37 ............................. TTTCCTACTGCGCCGCTGTCACTTCCGCCATGCCCGG 58877 29 100.0 37 ............................. ACAGCTAATGCTTTTGTAAGCAAGTCTGCATTCCCTG 58943 29 100.0 36 ............................. TGCTTCTTTTGCGAACTTTCTGATGTATTTTTTTCG 59008 29 100.0 37 ............................. CCAATTGGCCTTCTTGTTCATTAATTGGAGAATACGG 59074 29 100.0 37 ............................. AGCTAATTTGGTACCGGGTTTGTACCATTTAATTTTG 59140 29 100.0 35 ............................. GCCAACCACGTACTTACTCCGGTTTCCATTTTCGG 59204 29 100.0 35 ............................. ACGAAACCAGCAAGTAAAACAAAAGAAAAAACAAG 59268 29 100.0 37 ............................. TCAGATGAGGAATTAAAACGTGCAGAAAACAGTAGCG 59334 29 100.0 36 ............................. GGAGATTGGTTCCGCAAGTATCGCATTTAGCTTTTG 59399 29 100.0 36 ............................. CGCAAAAGCGAGGGCATCAGAATTATTTAATTCGAG 59464 29 100.0 38 ............................. CAAGGATAATTTGCTATCTATATTCTGTGTATTTTTTG 59531 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 24 29 100.0 37 TTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : TTTAAAATTTGGTGGTGAGTATATGTATGTAATTCTAATTTATGACATTTCTGTTGAATCTGGTGGTGCTAAAGTTTGGCGCAATGTCTTTAAAATTTGCAAAAGATATTTAACACATGTTCAAAAATCAGTATTTGAAGGAGAAATAACTCCAGCACTTTTGGTGAAATTACGAATGGAGCTAGATAATTATATTCGTCAGGATGTTGATTCTGTGATTTTATTTTCTAGCAGACAACAAAAATGGCTAGAAAAAGAATTTTGGGGATTAGCAGATGAAAAAACATCGAATTTCTTTTAGCTGGTTTTTTCTGTCGCCCCCTAGTAGTGTGAAAAACACTGGAGGTCGACAGAAACATGAAATGCGTTGGTGGAGAAGCTTTCTCGTATATCTTACTTAGTTAAAATAGGAAAACAAAACTAAATTTCACCTATTTTTGTATCGGTCGACAAAAATAGGTGCGTGAGGTAAGATGGGAGTAAGGAAAGATTTTGACGGG # Right flank : TTCTTACAAGAAAAGGATGAGCGAGAAGAGGCACTGCCACTAAAAAATGAGAATAAAAGAAAAACACTTTCGTTGGATTCATGTAAAATGAAATTAACGGAGGTGTTTTTTCATCATGTCCCACTTTTCTGAGCAGACTGATTTTATTTAAAAAATCAGTTTCTCAATAATTAGTGTATTCTCTTTTTTTCGTCCAGCGAAAACCATTTTCGCAATCTTTGAAACCGCTTGCAGTAATGGTTAGCTATACTTATAATGAACGTAGCAAATCGGCCAAAAAGGAATAAATTTTCAAAATTAGCTAACTGGAGTAGTAGAAAACGGAAAAGTGGAAATATTTCGTTCTATTTTCATTGAAAACGAACAAAAAGGAGAGCTTAAGAATGAAAAAAATCGTACCAATCAGTTGTATTGTTGCAGTTTTAATGCTTCTAGCGAGTTGTGGTAGTGGAGATGCATCCAGTTCAAAAGTGGAGTTTTATACGGATAAGGGCGGAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //