Array 1 556859-559927 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZON010000001.1 Streptococcus sanguinis strain STn342 Ssanguinis_STn342_Nina_Sia_YES_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 556859 36 100.0 29 .................................... AAATTTTACAAAATTTATATTTACGCTGG 556924 36 100.0 30 .................................... AAGAACGGGAAAGAGCCTAACAATCCATCC 556990 36 100.0 30 .................................... TCTTGGTCGAGGTTGTCGCTACGGCAGCGG 557056 36 100.0 30 .................................... GCGCCAGCATGTTTTGACAAGGAGGAACCA 557122 36 100.0 30 .................................... AGAGTCGAAAAGCATAGCTTTTTAATTTCC 557188 36 100.0 30 .................................... GTGCTAGAGGTTTTACAGCTTTTGGTGCGT 557254 36 100.0 30 .................................... CTAGGGAAGCGTTGAGTATTCTGTCTGATA 557320 36 100.0 30 .................................... AATCCTCGGGCACATCAGAACGCAACTTAC 557386 36 100.0 30 .................................... TTTTCTTCTAAACTAAATTCAAGTTCTAAT 557452 36 100.0 30 .................................... AGAAAGGCCTCTTATAAGACTAAGAAAATG 557518 36 100.0 30 .................................... AGCGGTTCATTTTTAGGGGCATTGTTGTCA 557584 36 100.0 30 .................................... CTTTCAGGCGAGACACTTTTTCCGCAATGT 557650 36 100.0 30 .................................... ATACATTTTCAAATATTCTCGGTCAAATTC 557716 36 100.0 30 .................................... GTTTATCGCAGAGCCAAAAGCGTGTGATAT 557782 36 100.0 30 .................................... TTAAACGAGCCAAAATCTCGATCAAGGTAC 557848 36 100.0 30 .................................... AATTTTCAATATATGTCCATTTCCTTTCAT 557914 36 100.0 30 .................................... GTAATTCCCGCACGAACGATAAGAATCGTT 557980 36 100.0 30 .................................... GTTGGGAAGATATAGCAGACTATGTACCTT 558046 36 100.0 30 .................................... CCTTAGAATTATCCACCGATTACAATTTTA 558112 36 100.0 30 .................................... AAGTCCGCTTGTGGATCTGCCTTTAACCAT 558178 36 100.0 30 .................................... ATTATACACCAAGTTTACTTGTTTTGTTTA 558244 36 100.0 30 .................................... TTACTTACAAGTTAAGTATAACATATTACA 558310 36 100.0 30 .................................... TGGACTCTAGATAAAATGATGGCAAGTGCG 558376 36 100.0 30 .................................... CGATGCCAGACCTTACTGTACTCCGTTTCT 558442 36 100.0 30 .................................... CTTTAAACATTTAAAGATCAACGAAGAAGA 558508 36 100.0 30 .................................... ATGGATATTCGAACCTACCTCAATCAAGGT 558574 36 100.0 30 .................................... GCAAAAATGCTAGCCTATGCCGTGTTAATC 558640 36 100.0 30 .................................... CTAATCCGGAAATTAAAGTCCATGGATTTG 558706 36 100.0 30 .................................... TTGAGATGGATCATTTGAGAAATCTCCCTT 558772 36 100.0 30 .................................... GATGTTTAATGGAAAATAAGAAAAGATACA 558838 36 100.0 30 .................................... ATTGCCGTTGTAAGTTATAATTTATTTGAA 558904 36 100.0 30 .................................... AAATTCCTTCAAACTATGTCCGTGATTCTG 558970 36 100.0 30 .................................... ATAAGGATAAGGTTAAACATCTTTCTGAAG 559036 36 100.0 30 .................................... CAATAAGCATTGCTTTAAACTCAGCTTCTT 559102 36 100.0 30 .................................... AAATTAAACCAAAGGTTGATAATATTAATC 559168 36 100.0 30 .................................... GATTGGGATGTCGGCTAGGACTAGTTCCTT 559234 36 100.0 30 .................................... TTCGAATATGCAATTCTCTTGCCCTTTTCA 559300 36 100.0 30 .................................... GGTACATTTCTATGGCTGAGGGAGCTGCAG 559366 36 100.0 30 .................................... AAAAAACGTGGAGCGAGTTGGAACATGCCT 559432 36 100.0 29 .................................... TCTATCATCAGGATTTTCCGCATTAGCAC 559497 36 100.0 30 .................................... CTTCCATTCCAAGACGGAAACCGCCGATAC 559563 36 100.0 30 .................................... TCCAAATGTAAGCCAGTCATAGGCTGGAAG 559629 36 100.0 30 .................................... AAACAAACACACCTGAAACAGTTGCGCAAA 559695 36 100.0 30 .................................... TTTTGACGGTTTGCGTTTGTGTTGGTATGT 559761 36 100.0 30 .................................... TGAGAGTTATTTTGCCCTCTTGTCTCTGCT 559827 36 100.0 29 .................................... CTAATAACGTTCCCTTGACTGTGGGGCTG 559892 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 47 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATAGTTATTTAAACTATAGTGAGTTTATAAATTGTTGTAAAAAGATGAATGAGATGACTATGGATTTACAAAATTTTCACGTTATTAACTTTCTATCAAGCGAGGGATATATTTATATAAATAAAGAAAACATAATGAATGTTAATATTGTTGCGGATTTAGTAGAACACTTTTACGAATTTTCATTTATGTATGAAAGATTTTTTGGTCAATATCCTGCTAATGAGGTACCGGATGAAAAGGTTTTTTTAGAGTCGTTACAAAAAGTTTCATCATATCTTTTTAGTAAGGATATTGCTCATATTAGTTTATCTATTCCAGATATAGTTACTTTGAAAATTATAAATCATTTGTACCAATACGATAAAAAGCCAAGAATTTGTTCTACGATGTCTAATCCGCTATTAATTAAGTTTTTGAATACCTATAATTGACAGGAATCGCAATAGGCATTATAATCAATATATGAGTATAAAAATCACAATTTTTCCATTTGAG # Right flank : CAGCTTACTATAGACCAGATAGCGTTGTTCTGTTTTTATTATAGTTTAGGATAGAGGGGAATCTGTAATGTTTTATCATAAAAAGGGCTGAGTAAATCAGTCCTTTTGTTCTCTATTTCCCCAAGCAGAATTGGCTGAAGAGTTGGGTGATGAGTTCGTCTGGTGCGGCGTCACCAGTGATTTCGCCGAGGATTTCCCAAGTGCGAGTCATATCGACTTGGAGAAGATCTACCGGCATACCCATTTCCAAGCCTTGGTTGACGGCTTGCAGGCTTTCTAGGGCTTTTTCAATTAAGGAGATATGGCGGGCGTTGGATAGGTAGGTGGCGTCTTGCTCGACGATACCAGCATTTTCAAAGAAGAGCTGATTGATGCGTTCTTCAATTTTATTGATATTTTGATTGTGGAGGACAGAAATCTTGATGACATCAGTTGGCAGCTGATCCAGCTCAATCTTTTCCTCAAGGTCAGTCTTGTTAAGCAGGACGATACGATTACTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //