Array 1 95670-96909 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007028.1 Thermocrinis ruber strain DSM 23557 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 95670 29 100.0 36 ............................. GCCCGATAATGCACCCGCACGGCCACCAGCGACCTG 95735 29 100.0 39 ............................. TAACCTTCGTTTAGGTGAGGCTTTTGTGGCGTTTCTGAG 95803 29 100.0 36 ............................. CTAACGGACAAGGCAGAAGTCTTATCCACCATCCTA 95868 29 100.0 39 ............................. AAAGCTTCTTTTTGTGTGCTACGATGATAACAAAGCTTG 95936 29 100.0 39 ............................. AAAGCTTCTTTTTGTGTGCTACGATGATAACAAAGCTTG 96004 29 100.0 39 ............................. AAAAAGTAGTCGTAAGTAGAGGCTTGTACGGGCGTGATT 96072 29 100.0 37 ............................. TTAGAGTTCTTCAGGGCGTTAGCATTGATACTGGTTC 96138 29 100.0 36 ............................. ATAGAAGAGGTGGGCAAGGTTCAAGACAAAGACGCA 96203 29 100.0 41 ............................. GAAAAGACCGCAAGAGTAAGAGTGCAAATGCCAGACCTTGA 96273 29 100.0 37 ............................. CGGTATTCTGTAAGCTTTATATTGCAGTAAATCACAA 96339 29 100.0 37 ............................. CATACGCCCGCAAAGTTGCAATAGACGAGACAGGGAT 96405 29 100.0 37 ............................. CGGTATTCTGTAAGCTTTATATTGCAGTAAATCACAA 96471 29 100.0 41 ............................. CTACGACGAGAAGGGCGCCTTCAGACTTGAGGAGTTTCTGA 96541 29 100.0 40 ............................. CCCAGCAATGTGATGAGAGTCAGGTTTTTAACTTAGTTTA 96610 29 100.0 43 ............................. CCTATTATTGGATGGACATTCCCAGCTATATGGAAATATGCGG 96682 29 100.0 38 ............................. AGTTCCATACTTTGCTCCGTTTGAATTAGGTTATACAA 96749 29 100.0 38 ............................. ATACTCAACCCAAGCCATCCCACACCCTCAAACAACCA 96816 29 100.0 36 ............................. ATCTCAAAATAGCTAAGAACCTAAACCAACGGAATA 96881 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =========================================== ================== 19 29 100.0 38 CTTTCAACTCCACACGGTACATTAGGAAC # Left flank : AGCTCCACCACACCGAGCCCCGGTGCCACATGCCCTCCGTTTTTTGCGGTAACATCAAGGATGTAGTCCCTTACTTCCTCGGCGAGCTTTTCAAGCTCCTCGTAGGTCATATACTTAAGGTCTATGGGTCCAGTGTATTTTTCCAAAATCATAAAGATTAAATATAGTTTCTTTTGTGAAATCGGACTACGTGTAAATTACCCTTGGATGCCTTAATCTCTCTTTCTGTAAAACCTCAAAAGCTTTCCATCGTTGGCATCTATAACCGCAGTGCCCTCCGTTCCCCTAACCCTGTAATAACACTCTCCCTTCTTGTTCTTAGAAAGATTAACAGACAGAACCCTCCCTACATACTGACTTGCCTGCCTGCTCGCTTCTTCTACACTGAGCCTTGGCACACAATCGGAACCAAAAGCTACTCCCACAGCCAACACCAACACTAAACTCCCGAATAGATGCCTCATGCAAAAGAATTATATCATTACTCAATTCCAACTTTT # Right flank : CCCCAAACGACCACATTAACTAAAATAAGACATATCAATAATTTTGTCAAGAGGGTACCCCTTTCAAATGAAGTTAATTTTCCGAAATCCGAGATCATGCAAAGTTGAGTCTGTTATTGTTAAATTTAAACCCTTGTCTCTCAACGCTTTCCGCCACCGACCATAATTACGGCATTACGGCATTACATAATTACGACTTTACGGTGAGACTATCCCTCCAAAAGCTTGAAAATCAAAACTTTCTCCCTATCAAAATTGAGATCTTCAAAATAAAAACACCACTCCCATATTCAGTTGCCAAGTTGACAAGGGTCCAAGTTGGACCCTCAAACTCTCTTTCACTTAGGGAATAATTATAACACCTCTTCGGTCAAAATCTGCCATCAAAAGGAAAAACTGAAGCGATTATATTTTTACCCTATGAGAATTATTCTGTTTTCCGGAAAGGGTGGTGTTGGAAAGACTACGGTTTCTGCTGCTACTGGCTACAGGCTCTCAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACTCCACACGGTACATTAGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 652565-651865 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007028.1 Thermocrinis ruber strain DSM 23557 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 652564 29 100.0 36 ............................. TAACCGCCCAAATCTCAAGTTTAGCCACCTCTAACA 652499 29 100.0 37 ............................. TTTTAAGGAGGTGCAGGCTATGGAAAGGAATATTAGC 652433 29 100.0 39 ............................. ATCATACTCCGCCATGCTTCCTGGTCAACCAAAGTGTAT 652365 29 100.0 38 ............................. AAGTGTGTTCTTATCTTTGTTTTTTGTTATTGTGGGTG 652298 29 100.0 39 ............................. AAAGTAATGGTTTAGGTAGGTAAAGAAACGTGTTGCGGT 652230 29 100.0 41 ............................. TCTTAACCTTCTTTAGGTAAGCCCTCATCCTCCGAAGGAAG 652160 29 100.0 43 ............................. GTGCTTTTTTCTTTGTTGTTCTTATCTCCTTTGTCTGGTTCCT 652088 29 100.0 36 ............................. ATATGGTCCCCCAGTTGGGTCTGGCTGGTGGATGGT 652023 29 100.0 36 ............................. ATACGGTCCCCCAGTTGGGTCTGGCTGGTGGATGGT 651958 29 100.0 36 ............................. ATACTCAATCATGGTATGCAAGTGTTCAGGGACTAC 651893 29 93.1 0 ........................A...A | ========== ====== ====== ====== ============================= =========================================== ================== 11 29 99.4 38 GTTCCTAATGTACCGTGTGGAGTTGAAAG # Left flank : CCTACGTAAGGGAGCTTGAGGGTCCCACGAGGACCCTTGTCAACTTGGCAACTGAATAAGGAGGGTGTAGTCTTCCTAAGTGAGATAGTCCTCTGCCTTTACAACTCCACCGTATTTTTGCTTGTATTCTTCCAACTCCCTTAGCTTTTGGACGATGAGTTCTCCCATGGACATTTTCTTGGTTATGGCTTCTATGCGCAGGGCTTGATGCACATCGGAAGGTAGCAAAATTGTGGTTTTTACCACTTTCTTCTTTTTGCATCCCATAGGTTTTAATTATATACTCTCGCCGTAAAACCGTAAAGCCGTAATTATGTAATGCCGTAATGCCGTAATTATGGTCAGTGGCGGAAAACATTGAGAGACAGGGATTTAAATTTGATAATAGCAGACTCAACTTTGCATGATCTCGGATTTCGGAAAATTAACTTCATTTGAAAGGGGTGCCCTCTTGACAAAATTATTGATATGTCTTATCTTAGTTAATGCGGTCGTTTGGG # Right flank : AGAATTGTCAGAAACTGCTTAATTTTTGTGTTTTATAAACTATATGAAGTTTCTTGTGTTTTTTAGACCAGTTTCTATAAGGCTTTTTGAACCTTACTGCCCAGACAGGCTTGAGCTTCAGTACGATAGAAAGTTTATGCCCATACTCAAAAAGGCACTAAGGCGAGCCTTGGAAAGAAGGCACGAGTTAAGACCTATTAGACCGATGGACTTTTACAGGCTGGAGAGGGGAAAAAGTAAGGATTTCCGTCTTGTGGTTAGTTTTTATCTTGCAAAGCAGATAGAGAACATCCCACCGGAGTTAAAAAGGCACTTTTGGTTTATCCTTCACGAAGAACTGAGCAACACTATAAAGGAAGAGTTCGCTATGATGAGCTGAGGTCAAAAGGGTTTTATTCTCTTCCAAAAGCTCCAAAGCAAGTCAAGGCTTATGTGGGTAAGTTCAGAGGCTATTAGACCTAAGAGGGCGTAAAAGGTCCATTCTTTGTATGCGAGCTCCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTAATGTACCGTGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 805983-807143 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007028.1 Thermocrinis ruber strain DSM 23557 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 805983 29 100.0 37 ............................. TAGAGGGGAACACTTACCCCCTCGGCGGGCATATCCA 806049 29 100.0 36 ............................. CGGTTTCTCCAGCCACGCCGAATTGCTTTAGGGTTC 806114 29 100.0 37 ............................. CCACTTCAACCCTCTGCAGATCTGCGGATCGTAGGTG 806180 29 100.0 36 ............................. AGCTTATAGCTTTGGTTTTCAGTAGTATAGCTAAAG 806245 29 100.0 37 ............................. CAATTTTTTCAATTTTCAAGCGTAGGTCAAAAAGAAA 806311 29 100.0 37 ............................. CCTCTTCAGTGAGGAAAGCAAGGTATTCCTTAAAGGG 806377 29 100.0 52 ............................. AAGCACGAGTAAAATCAAAGCGACCTCCATAGCGGTCAAGGTCAATTAAAAG 806458 29 100.0 39 ............................. AAGTCTTAACTATGTAGTCCCTCATAACCTCATCCTCCA 806526 29 100.0 36 ............................. CTCTATCTCTCGTGCGTAGCCTTCCCAGACCTGAAG 806591 29 100.0 36 ............................. AAATACCCACAAAAACGCCAAACTCTGAACCCTGAG 806656 29 100.0 35 ............................. CAAAATAATATGGAGGTAAGGTTGTCCCTAAAGTC 806720 29 100.0 35 ............................. CAAAATAATATGGAGGTAAGGTTGTCCCTAAAGTC 806784 29 100.0 36 ............................. TAGCTTGCTGTGAAAAGTCCCAAAAGCGTTCCGACA 806849 29 100.0 37 ............................. TGAAACGCCGACAGCTGGACACCATCAGAACGCCACC 806915 29 100.0 40 ............................. CTCTGACTCGTTGGAAATTCTGGAAAGGATGTGGGCTAAT 806984 29 100.0 37 ............................. TTCTCCAGTTCGTTTTGGCATTTTGCAAGGAAAGAGG 807050 29 100.0 36 ............................. CAGCTTATCCCTAAAAGCATAAGCAGGATACCAAGT 807115 29 96.6 0 .............C............... | ========== ====== ====== ====== ============================= ==================================================== ================== 18 29 99.8 38 GTTCCTAATGTACTGTGTGGAGTTGAAAG # Left flank : TGCCTCGTTGGGGAACTGAGGGTTCCGCAAGGACCCTTGTCAACTTGGCAACTGAATAAGGAGGGTGTAGTCTTCCTAAATGAGATAGTCCTCTGCATTTACAACTCCACCGTATTTTTGCTTGTATTCTTCCAACTCCTTCAGCTTTTGGACAATGAGTTCTCCCATGGACATTTTCTTGGTTATGGCTTCTATGCGTAGGGCTTGATGTACATCGGAAGGTAGCAAAATTGTGGTTTTTACCACTTTCTTCTTTTTGCGTCCCATAGGTTTTAATTATATACTCTCGCCGTAAAACCGTAAAGCCGTAATTATGTAATGCCGTAATGCCGTAATTATGGTCAGTGGCGGAAAGCGTTGGGAGACAAGAGTTTAAATTTGACAATAACATACTCAACTTTGCATGATCTCGGATTTCGGAAAATTAACTTCATTTGAAAGGGGTGCCCTCTTGACAAAATTATTGATATGTCTTATCTTAGTTAATGTGGTCGTTTGGG # Right flank : GAAAGAGACAGCATACTATACAAGGACAATGTCTTTCTGTCTTTGGTAAAGAAAGAAGGACCTTTTGGTGTAAGTACTTTCTTAAAGGGAAGTATCACGCCGGGACTTAGGCTTGTGGAGATTAGATACGGATACATGGAAGTATTAGACATTGATAGAGCTAAAAGCAGTTGGAATTTACGAAAGAGCCATATTCTATGGAGTTGAATACATATACACAGATAAGTTAATCTAGAAACTTTTTAGTCTTCTAAGGCGTGTCATACCAAACTTTGTGGAGTTTTACAGATTTCCTCCCGGCAAGCTTCATGGTGTAGCGGTCAGAGTTGAGTTTTAAAATGAGGTTTAAAAGGTGTCCCAGTGGAAAATTTTAAAACAGCCTACCTCTATATCTTGGTATAATAAAGAAAGGTTGCAGTTGTCAATAAGAAGAAACCTAGAGGAGGAGTATAATGTCAAAGGAGTTTGAGCTTGGCATAGGGCTTTTGAAGAAAATATAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTAATGTACTGTGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 859098-860004 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007028.1 Thermocrinis ruber strain DSM 23557 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 859098 29 100.0 42 ............................. TATCAAAGGGATGGAGAACACGATAACGAAAAGCCTTAAAGG 859169 29 100.0 41 ............................. GACAGCATAATATGTTTTCCCTGATCCGGGCACTCCAAAAA 859239 29 100.0 37 ............................. ACAGACTGTTGCTTTCTTCTGGCAATGGTAGAAGGTA 859305 29 100.0 37 ............................. ACTTTATACAGGTTTTGGTGGTAAGTATCTTTCAGGT 859371 29 100.0 37 ............................. ACTTTATACAGGTTTTGGTGGTAAGTATCTTTCAGGT 859437 29 100.0 38 ............................. ATAAAATCATCAAGGGCTTCAATAAAGACCCTCACATT 859504 29 100.0 36 ............................. CAGCAAGAGCAATCCAGCCAACGGGGGAGGCAAGCA 859569 29 100.0 36 ............................. TAGCTAAACCCTCCTTAAAACGATAATTCATCACTC 859634 29 100.0 41 ............................. CTATTTTTCGTAGTCTTTGCTCCGGCTACCCTACCCGTAAT 859704 29 100.0 38 ............................. AGCATAGAACCATCTTTGCACCTTCAAGCCTGCAGTTT 859771 29 100.0 39 ............................. TCAGGTTCGTAAGTGTTCCTTCTGCTGCTTCAAGCACGT 859839 29 100.0 42 ............................. TCAACCTGAACAGTGTGCCCCGTGTTTGCTAAGGTTATTGTG 859910 29 100.0 37 ............................. TAAGTAGCAAAAACGCCAAAGTCTATAACATCAACGA 859976 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 14 29 100.0 39 GTTCCTAATGTACCGTGTGGAGTTGAAAG # Left flank : CACCTCCTTTATAGGTTTTCTATGAAAAAAATTTAGTCTGCTCTTATCAAATGTCAAGGGGTAAAATTTCTCCACCTTCCTTATCCACCGGATGGGATGGAGGCACCCATACGAAAAGTTTATACCACCGAACAGCCAAAAACTGGTTTATAATAGAAAACAAGGTTTTTGAGGGTTCCAGTTGGGACCCTTGTCAACTTGGCAACTGAATATGGGTTAGTGTGTCCTTTCGGTGGGCTGTTTCAATTTTGAGAGGGAGAAAGTCTTGACTTTCAGGCTTTTTGGGAGGCAGTATCACCGTAAAACCGTAATTATGTAATGCCGTAATGCCGTAATTATGGTCAGCGGCGGGAAGCATTGGGAGACAAGGGTTTAAATTTGATAATAACAGACTCAATTTTGCATGATCTCGGATTTCGGAAAATTAACTTCATTTGAAAAGGGTGCCCTCTTGACAAAATTATTGATATGTCTTATTTTAGTTAATGTGGTCGTTTGGG # Right flank : GGTTATTTGGTGATGGGTGGAGCGTGATTATCCTTTTCCAGCCACCTGTGGGTATGCGGTTTTTGATATGATTTTTCAAATGCGAGTCAAAAAGGAGCTTTGGAGGAGCTACCATTGGCAAATTCAAAATAGAGTTAAAACTCAGGAGGAGCTTGAAAGGTTCTTAAGGCTTTTGCCAGAGGAAATTGAGGGCATAAAAAGAACGCAGGGAATATATCCTATGGCTATAACTCCCTACTATCTTTCTTTGATTGACCCCCAAGATCCGCAGGACCCAATAAGGCTTCAGGCTATCCCAAGGGCGGTGGAGGTGGATGAAAGGGTTCAGTGTCATGGAGAGCCCGATGCCCTAAGGGAGGAGGGAGAGATCCCCGGGCTTACCCACCGATACCCCGACAGGGTCTTGGTGCAAACTACCACCTTTTGTGCAGTCTATTGCAGACACTGTATGAGAAAGAGAATATTCTCTCAGGGAGAAAGAGCTATAAGCGTAGAGCAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTAATGTACCGTGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 5 906915-906220 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007028.1 Thermocrinis ruber strain DSM 23557 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 906914 30 100.0 36 .............................. TACACCTCCGCACCCACGCTTTCTTTCGCAAACAAA 906848 30 100.0 36 .............................. TACACCTCCGCACCCACGCTTTCTTTCGCAAACAAA 906782 30 96.7 36 ..............C............... TATCTGAACAAGACATTCTGCCTGATGGTGCGGTGG 906716 30 96.7 37 ...........A.................. CAAACAGCACAAAAAAAAATATTTGGAGGCAATGACC 906649 30 96.7 37 ......A....................... GAACTTGTAGAGTCCGATCCAGCATCTTTACCTGAAG 906582 29 93.3 36 ...........A.........-........ ACATTCTGGAAAATTTGACTAAAATAATTTCCCGAA G [906567] 906516 30 90.0 36 ......C....A.....G............ AACTTGATTCTCGCTTCAAGCTTATCAAGCCCGCTT A [906500] 906449 30 96.7 36 ................C............. TATGCAGGGAGCACAGTAGGTAGAGGGTCAAATTCG 906383 30 96.7 37 ....................A......... GTCAGGAGGTTAGCGTGATGAAAGTCTATGCCTTCAT 906316 30 100.0 37 .............................. TAGCTTTTTTGCAGAGTTCTGCACCACTGCCTTGTAT 906249 30 90.0 0 ......C..........T.......A.... | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 96.1 36 GTTTATTAAGTGCCTATAGGGGATTGAAAC # Left flank : GAGACACTATGGACAAAAATATCTCACGACAAGTCTGATGAACTGCTTGAAGCATTGGATAGGATTAAACACGACTTTCTTTATAAAAACTTTAAGCTGATAGAAGACCAACCCTATAAAGAGGATGTTTTTGTGGCTGTTGATTATAAAGCGGAGAGTGTGCTTAATGCAGTCAAGGAAATTTGGGAACAACGGCAAAGAAAAGAAATCTCTTTGTGGGAGGCAAAGAGAGAGTTTGAAAAGTTAAAGGCTGAATTCTACAGTTATGTAATAAGCGTGGCACTAAGCAAAGATAGTGAGATTGAATTAGATGACAGACTAAAAATTCGGGTAGTTAGAAGGGAGAATGTAGGCTTGTATTATGATGGTGAAATAGGGTTCCGCATTAAGGGAGGGGAAAATGCTTTATAATAGTCATGAGGGCAATGAAGTAGAGGGACTCTTAAAAGTCCCTTGTCTCTAAGTTGGCAACTGAATATGATAGATAATGCGAATGTCTG # Right flank : ATCTTCAGAACTTGTAAATTTATAGAACGGCCTCAGCTGATTATTTGGCTAATATGTTAATAAACAAGCTTATCAACATATTAACAAATTAACAGGATTGCTATAAGGTAGATCACGCTGGATAAAGGCAACGATTAGGTATGCAGAGGTTTGCAAAAGCGAAGAACAAGAGGGTATAAGGCAGGTAGATGTAAGGGATTATTTTACTTGCTTACCTTTATGGCTACGCTATAGACCACAGATTTTTTAGGAAGTCTCAAATATGGAGGTAATTTCTCACCTGTTGTATCCGTATTTATTGGAGTGCTATAGGAAGAAAAGATTTCCATCTGTATCCTCTGGACCAATGCCGTGCAAGTTATACCATGCTATCCTATCCGCAAAAGCTACAGTGGCGGGCAACTTGTTCAGTGTAAAGGAAGAGAAGTTTAGAAGTGTAAGCCTCAGCACATCCTCTATAGCTTCATTTAAAGGATAATCACCATACAGGACTTTTATCC # Questionable array : NO Score: 8.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATTAAGTGCCTATAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 6 913523-913677 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007028.1 Thermocrinis ruber strain DSM 23557 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================== ================================================ ================== 913523 20 100.0 47 .................... ACTTGCTTTCTCATTGCTTAGCCTCCAGCTTATGCAAGTTTATTAAA 913590 20 100.0 48 .................... GCCCTCTGTTCAGATGCTCCGATGCAGACTATGAACTTGTTTATTAAG 913658 20 100.0 0 .................... | ========== ====== ====== ====== ==================== ================================================ ================== 3 20 100.0 48 TGCCTATAGGGGATTGAAAC # Left flank : TTATGCATAAGCAATCTTTCTTTTTTCAGTAAAGACATGGCTATGGACTTCATATGTGTGGTTATCGGAGTGGAAAAATACACATGAACGTTTGGAGGGTGGAACAAAATGTTGTTTTCGTTCTTTTCCTTAATCTTGCCAAATATTTTTGAGAATGTGAAGAGTTTAAACTTTCTGTGGTTATACACAAAGCCCACTTCATGCAATATACTGGCAAGGATTGGGTCCATGTTCTTATAAAAGAACCCCTGGAGCACGCTGTTGTAATACTTGGGCAAACTTAAAGGTTGGTCAAAGCTAAACTTGAATTTTAGCTTATAGCTTTTATAGGTTCTTTCCGTCATCACTAAAATTTATAATAGCCTTCCTTCTATTGGGCATGGACGGGAAATGTTTTATAATAGTCATGAGGGCATTGATGTAGAGGGACTCTTAAAAGTCCCTTGTCTCTAAGTTGGCAACTGAATATGATAGATAATGCGAATATCTGGTTTATTAGG # Right flank : CATCCTTAGAACTTGTAGATTTTTTTAGAACTGCCTCAATTCTAACAGTTAGACTTCTACAATCATGCAGAGTCTCGCTAATTTGTTAATATATTGGCAAATTTGTTTATTAGCATATTAACAAATTACTCTCCTTGCTTATTAACAAGTTATATGATAAACTTATTAACATGAAAACCTTGTCAGTAGTCAATCACAAAGGAGGTGTGGGAAAAACAACGCTTACTGTAGTCCTGCTTCATCTACTTGCAGAACGAGGCTTGAAAGTCCTCGCTGTAGACCTTGACCCTCAAGCAAACTTGACCCTGTGTCTTACTCAAAACATCTCTGAGGATATCCCTCAATCTTACCACTTACTCATCAAAGGCTCTTCCCAACCCATAAGTTTAGGAAATATTGACCTCATTCCTTCCTCCTTGCTCCTATCCCAAGCGGAGTTTGAACTTGTCAGTATGCATGCGAGGGAGCTTAGGCTAAAGAGGGCACTGTCTACCTTTAAC # Questionable array : NO Score: 4.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:-0.75, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCCTATAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 7 1381426-1380866 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007028.1 Thermocrinis ruber strain DSM 23557 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1381425 29 100.0 40 ............................. TTGAGATTGTGTCTCAATTTCAAGAAGCGGTTCTTACTGC 1381356 29 100.0 36 ............................. CGCATCTTGTAGCCTTGACATCAAAGTTTGAAATTC 1381291 29 100.0 36 ............................. TATTCCGTTGGTTTAGGTTCTTAGCTATTTTGAGAT 1381226 29 100.0 38 ............................. TGGTTGTTTGAGGGTGTGGGATGGCTTGGGTTGAGTAT 1381159 29 100.0 37 ............................. TAGAACTGCCAAGCGAGCGTATCCCAGCGGTCTCCTT 1381093 29 100.0 38 ............................. TTGTTAAAGGGTCATCCATATAAGTGGCAAGTATACGC 1381026 29 100.0 38 ............................. ACTCTCTTTGAACATCGTTGTAAGCCTCTTGCAAATAA 1380959 29 100.0 36 ............................. GGGCTTTAACCAAGCACGAATTTCCACAGCAGGAAT 1380894 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ======================================== ================== 9 29 99.6 38 GTTCCTAATGTACCGTGTGGAGTTGAAAG # Left flank : TTAGCCTGTCGTGTCCTCCAAGCACAACTACCCTCATTTCAACCTCCTATATTGAGATTTGATTTCAATTTTAATAAGCTTGGCGAAGAGGCGAGTATGATAAATATCAAGGACACCCTTTTTCTGTGTAAAAAGTTGTGTTATAATGCTACATACCTTTTAAGGGAAGTAGAGGGTTCCACTTGGGACCCTTGTTCAACTTGGCAACTGAATATGGGTTAGTGTGCCCTTTCGGTGGCTGTTTCAATTTTGAGAGGGTTAAGGTTTTTATTTTCAGGCTTTTTGGGAGGCAGTATCACCGTAAAGCCGTAATTATGTAATGCCGTAATACCGTAATTATGGTCAGTGGCGGAAAGTGTTGGGAGACAGGGATTTAAATTTGACAATAACATACTCAACTTTGTATGATCTCGGATTTCGGAAAATTAGCTTCATTTGAAAGGGGTACCCTCTTGACAAAATTATTGATATGTCTTATCTTAGTTAATGTGGTCGTTTGG # Right flank : TGTGGAGTTGAGAGATTGACAAGGTGCTTTTTTTTGTAGGATAATAATTCCATGCAGTTGGACGATAAAGCTATAGTCCAGAGGGTAAAGGAGATGGTTTTGCCCATTGTTAGCAAGATGGGATATAAGCTTTTTGATGTGGAGTTTAAACCTGAGAGGGGGTGGGTTTTGAGGATAATAGTGGATAAGGAAGGGGGAATTACAGTGGGAGATTGTGAAGAGATCAGCAAGAGGATTTCCGCCCTTTTGGATGTGGAGGACATTATTCCCGTCTCTTACATGCTTGAGGTTTCCTCTCCGGGGCTTACCCGGGAGCTAACAAAGGCAGAGCACTTTAGCTTTTTTAAGGGTAGGCTCGTTAGGGTTGTTCTAAGGGAGCCCATTCAAAACAGAAGGGAGCTTATTGGAAGAATAGAAGACGTAAAGGATGATGTGCTGGTGCTTAAGGATAAAGGGACTGAAGAACTGCTACATATTCCTCTTTCAATAATAGCAAGGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTAATGTACCGTGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //