Array 1 39827-39371 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QJVF01000083.1 Escherichia coli strain CDR401 LRAT_34_S10_L001_R1_001__paired__contig_83, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     39826	    29	 100.0	    32	.............................	TTTTCATTACCGACACCCGAGATCTGGAGGGT	
     39765	    29	 100.0	    32	.............................	GCATATTTCATGCAGCGTTCTGAATGAGTAAG	
     39704	    29	 100.0	    32	.............................	GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA	
     39643	    29	 100.0	    32	.............................	CCGCCGTTATATGGAAAGATTCCGGTTTGGTA	
     39582	    29	 100.0	    32	.............................	ATGATCCGCGTGCGACCCTCGTTATAGTCTGC	
     39521	    29	 100.0	    32	.............................	GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG	
     39460	    29	 100.0	    32	.............................	CTGAAAAAAAGGGACTGGGTAACAGCGCGTGA	
     39399	    29	 100.0	     0	.............................	|                               	
==========	======	======	======	=============================	================================	==================
         8	    29	 100.0	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CAGCGGGGATAAACCGCCATCATATGAACCCAGGCACGGCACGCGCT
# Right flank :  GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGGTTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.24   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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