Array 1 377306-374504 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG729935.1 Oribacterium sp. oral taxon 078 str. F0262 Scfld2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 377305 36 100.0 36 .................................... GATATAGCCACCGCAGCACCACACAACGGCTTTGCC 377233 36 100.0 33 .................................... GGGCCAATCCTCACCAAACCGCTCGCGGTGTGC 377164 36 100.0 34 .................................... ATACTATGTCTGGAGTAAGCAAGGCACAAAAAGA 377094 36 100.0 35 .................................... GTATACAGCGCCGCTCCCAGAGCCGGCGCTATCGC 377023 36 100.0 33 .................................... TGTGCGGTGTCGATCTTTGGCGGCGGGAGCCGC 376954 36 100.0 34 .................................... CCTTGCCTGCGAAACACTTGGCTCTGACGTTTCC 376884 36 97.2 33 ...................T................ CGGACCTATGAGATGAAAGAAGCGCCGATCATT 376815 36 100.0 34 .................................... CAGAGTTTCGGTGTCTTATATTATTGACACAAAG 376745 36 100.0 32 .................................... ATTAGAAAATATATTGATGATGAGAAATATAA 376677 36 100.0 35 .................................... GGTGATTGCCGTCCGTATGATCGCGTCCCAAGTCA 376606 36 100.0 35 .................................... TCCCACGGCATAAGGCTTCGCATACCCAAAATCAA 376535 36 100.0 38 .................................... GATTTTATGAAAGATATCTATCAGCTCAGCATCATACC 376461 36 100.0 34 .................................... GTATTGAGAAGTTTCTTTATCTTACTTAGTGCAT 376391 36 100.0 37 .................................... ATTATCATATTTATTGCCATTCATAAATAAATAATCA 376318 36 100.0 37 .................................... TTTTATTTGGCAAGAAATATCTATTCCCTGCATCATC 376245 36 100.0 36 .................................... TTGGAAAATCGATAGCCTCCAAATGACAATAAATAT 376173 36 100.0 38 .................................... TGTTGCCATTGAGTGTAACTTTCCTCATAGTGATACCC 376099 36 100.0 35 .................................... TGTCTTTCGCTAGAGCCCTCATGTAAGCGCTTTAT 376028 36 100.0 34 .................................... AAGCTCTTTTCTCGTCATACTCTTTTCTCCTTTG 375958 36 100.0 34 .................................... TGCCTTACTTGTCTGATAAGGTGTTACAATCATC 375888 36 100.0 35 .................................... AGAGAAAAAGTCATCAGTCCATTCCCCAGGTTTTC 375817 36 100.0 34 .................................... TCAAACTCAACCTCCGGTTCATTTGTAAGAAGAG 375747 36 100.0 35 .................................... TTTCTTGTATCGAACGGTGCATAACCAATAGATAC 375676 36 100.0 36 .................................... AAGACGGCGGAGGAGCTTAAGGAGAGTTTCCGGAAG 375604 36 100.0 38 .................................... GAACGAATTGGATAGAATTATAGATGACTTTGTTAATT 375530 36 100.0 35 .................................... GCTGTAGGAAAAGCTGCATACATGTATCTAAAAGA 375459 36 100.0 34 .................................... CTTTTCCGATGATACCGTTATCTGCGGTTATTCC 375389 36 100.0 36 .................................... GGCTATACATATCTTGATGCTCTACTCTAGATACCT 375317 36 97.2 36 ....................T............... GTCCACCCAGTCCTTACAAAACGCAGTAAGGATCTC 375245 36 100.0 35 .................................... CAGGATCAGACTTTCGATCAGATCCATAAATTCCA 375174 36 100.0 33 .................................... TTCCTTCATCATATTACTAATCTCCCTTCTTCT 375105 36 100.0 33 .................................... AAGGAGGAAATTTATATGGCGTTTCATTTTGAT 375036 36 100.0 35 .................................... GATAGACTAACAATGTTATGAAACACTTCTAATAT 374965 36 100.0 35 .................................... GGAGTTGCCAGGATTTGATACCGTTCCATAAGGGC 374894 36 100.0 34 .................................... GAAGTTAAACACGATGTAATTACCGTTCGGAACG 374824 36 100.0 38 .................................... CAGATAGCGCATCCAATACCACTAACTTTGTCCATCAT 374750 36 100.0 35 .................................... TGATACAGAAAAGAACAAACATCATGACAGGAACC 374679 36 100.0 35 .................................... ATGATCAAAGATTCTGGAAAAATCTTCTTCATCAA 374608 36 97.2 32 ...............................A.... ATTATCATAATCATTTGTCCTCCTTTGGACTC 374540 36 97.2 0 ..................................T. | A [374509] ========== ====== ====== ====== ==================================== ====================================== ================== 40 36 99.7 35 ATTTGAAGAACCGATATCCCCGAAGGGGACGGAAAC # Left flank : CGGAGGCCGCGGTCGGCGGACCGATCGCGCTGGTGGAAGAGGGAGACATCATCTCCATCGACATCCCCGGAAACCGACTTAACATGAAGGTCTCAGAGGAAGAGCTCGCAAAAAGGAGAGCCGCGTGGAAGCCGAGAAAACCGAAAGTCACGGACGGCTACCTCGCCCGCTACCAGGCGCTCGTCACGAGCGGAAACCGCGGTGCAATCCTGGAGCTTCCAAAGGGATGGGAGTGAGAGAGCGCGGGGGAAGATCCTGATACTTTCGGGATTTTTGTATCTTTTAAAGTACAATCCGCCGGATGGGAGGTCCTTCCTTCCCATCCGGAATCCCTGTATAATATTTTGGAGAGGAGAAAAGCAGGCTTTTGCGCCGCAATAGGAAATATGCGGGGAAAGAGAGCTTTTCTCCAGCAGCAGGCAGTAAAAAATACAGAAAAATATTTTTGCGCCGCAAAACTGCATTTTCCACCGCATAAATGTTGCATCGCAGAGGACAGG # Right flank : CAGAACCAGACGGCGATTTTATAGCCTAGAATTTTGTGGGGCCATTATCGTTGTAAAGAATGAGGCAAAAAGACCTTGTTGGAAATGTCTCTCTGGATGACGGCTGATTGAGTGGACATTATAACTTTACGGTGGGAGGATAGGATATGAGGGAAATATGAATGTTATGACTTGGCAGCTAATGGCGCCGGAAGCAGGGATGAAGGCGCGGGAAGAGAGAAAATGTTCTTAGGAGATATGGAAGAGTTTCAGCTTATGGGGAAAGAAATATGAGTTATCTGTATGTATGCGAGCAGGGAGCCGTGATTGGCTGTGAGGCCAATCGCTTTCAGGTCTGCTATAAGGATGGGATGCTGAAGTCCGTACCGGGAGAGACGCTGGAGGTAATCGAAATTTTTGGAAAAGTACAGTTGACGACGCAGTGCATGACAGAATGTTTGAAGAGGGGAATCACTGTGCTTTTTTATTCGTCAAACGGTGCTTATTATGGTCGGCTCATT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGAAGAACCGATATCCCCGAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 172953-178891 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG729933.1 Oribacterium sp. oral taxon 078 str. F0262 Scfld0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 172953 33 100.0 34 ................................. AAAAACTCCCATATAATGGACATTACCCTTAACG 173020 33 100.0 34 ................................. TGACAGACTAATATACGGGACCGGCCAGGTATCT 173087 33 100.0 35 ................................. AGTTAAGATGACTATGAGGAGTAACCGCGGAGACA 173155 33 100.0 33 ................................. GAGAGTGATAAGATTCCCCGCAAAGGGTAAATG 173221 33 100.0 33 ................................. TTTTGCCAAACGGTAATACCAAAAAGGCGGACA 173287 33 100.0 35 ................................. GTAATGAGTATGGCAAGACAATTATGGTACTTGTA 173355 33 100.0 35 ................................. TTAAGATTAAGGGAGACACTAACCTTAAGGCATAC 173423 33 100.0 34 ................................. GAATATTTGAGAGGGCACGGGGCCGCAATACGCG 173490 33 100.0 35 ................................. ACAGTAGATTTTGTCACTGTGCTGATTCTTTTGTC 173558 33 100.0 36 ................................. TTATCAAGTCCTTACATGAGCACTTGGGAGGGCACA 173627 33 100.0 35 ................................. TAAGGGTCTGATAGAGATCTCCCTTTGGCATGATC 173695 33 100.0 35 ................................. ATCGCGTTAAATGGATTTAAGGCGTCGCTGGACAG 173763 33 100.0 33 ................................. CTAGCGATGAAATTGTTGTCCTCGCGGTAAATG 173829 33 100.0 33 ................................. AGTTAAGATGACTATGAGGAGTAACCCGCGGAG 173895 33 100.0 36 ................................. ACGGCAATGAAGTCCCCGCCATAGAAAACGTTTGGC 173964 33 100.0 35 ................................. CAAGAGGTACATATCAGATGTGCCTCCATTATACA 174032 33 100.0 34 ................................. GTCGAGTCCAAAGAATACATTTTTGATACATTTT 174099 33 100.0 34 ................................. TTTTTTATCCTCTGTCGTATTCGGGATGCCGATT 174166 33 100.0 34 ................................. TCCCGAAAATTCGGAAGAAATCCTATCAACTTTC 174233 33 100.0 34 ................................. ACAGAAACTAGATGATCTGTTTGCGAAATATATG 174300 33 100.0 33 ................................. CCCCTAATAGACAAGTAGACAGAAATTAAACCT 174366 33 100.0 35 ................................. TGGCATAAGTTCTAAATCAACGTCTTTTCCCGTGG 174434 33 100.0 34 ................................. CCTTCAAGTTCCCGGCTCCTCTTTTGTGCATTTT 174501 33 100.0 34 ................................. CCTGTGATATTGACATGATACTTTATCGATCTCT 174568 33 100.0 36 ................................. ACAGAAAGTTGATAGGATTTCTTCCGAATTTTCGGG 174637 33 100.0 34 ................................. TACAATCGGTTTTCCGATTGTAGCATGTTGCTAT 174704 33 100.0 35 ................................. CTTTAGGAATCGGCACAAGTTTGAGCACTTTTGCC 174772 33 100.0 36 ................................. AGGAATTTATAAAGAATTACCGAAAGAGCTAATAGA 174841 33 100.0 34 ................................. AATGCCGCTGGAGGTTATACCAATACCTATTTCC 174908 33 100.0 36 ................................. AGGAATTTATAAAGAATTACCGAAAGAGCTAATAGA 174977 33 100.0 34 ................................. TGGAAAGATTGCAATCGGCGGGGAATCTGTTATC 175044 33 100.0 34 ................................. ACAATGGAGTAAGCTTTTATGGAAGCAATTTTAA 175111 33 100.0 34 ................................. AGTGATAAATATATTCGGAACTTTGTGCTATATG 175178 33 100.0 33 ................................. GTTGTTCATATTTGTTAACAAATAGAAGTCTAG 175244 33 100.0 9 ................................. GTTAGCGGC Deletion [175286] 175286 33 81.8 35 ...A.AA.GG..A.................... AGGAATTTATAAAGAATTACCGAAAGAGCTAATAG C,TT [175300,175302] 175357 33 100.0 33 ................................. CGTACATGTACCGTATTCGGTGAATTGTACGAT 175423 33 100.0 33 ................................. CTCCCGGTAGTTGTCAACCTGTGCATTATAATT 175489 33 100.0 34 ................................. TGAAGTCCGAACTGGTTAAAATCATAAGTGTTTC 175556 33 100.0 34 ................................. ATCATGTCCGCAATTTGATAACATTGTGCACCTC 175623 33 100.0 34 ................................. ATCATGTCCGCAATTTGATAACATTGTGCACCTC 175690 33 100.0 34 ................................. AAATTCCTTCGGATAGGTCTTTTCGATTTCCTTT 175757 33 100.0 34 ................................. TCCCGATTCTGGACCTCGATCCGTTTTTTGTAGG 175824 33 100.0 35 ................................. AGATTCCTTCGCGATCAATAAATCTCTGCATCAAC 175892 33 100.0 35 ................................. CGCGGAGGACTAAAGTACGGGGAAATCCGCTCCTG 175960 33 100.0 34 ................................. CCGTGTCTCCCAGTCTTCGCATATATCGTCATAT 176027 33 100.0 34 ................................. TCCTTACAGCTAATCCATTTTCTCATCTCTTCGC 176094 33 100.0 34 ................................. CCAAGAACGCATGTTTTCAAGAATATCCCCCGCA 176161 33 100.0 35 ................................. ATCAAGTCGTTAAGGCAATTAGGGGGAGCAAATTT 176229 33 100.0 34 ................................. TCAAGTACCTCGCAGATCAGATCCTTACCGATCC 176296 33 100.0 34 ................................. GGAACTGAGGACTAAGGTATAGAGACCGGCCTCA 176363 33 100.0 34 ................................. TCTCCGCTCATGGCATCCATCAGAAGCGAATCCC 176430 33 100.0 36 ................................. TAAGAGTGCATGTCCATAGACCGAATTTGTAATATC 176499 33 100.0 34 ................................. AAACATACCCATCCATCGTCAAAACTAGCACTGG 176566 33 100.0 34 ................................. CTCCTCCTTCAGGCGTGTAGCAAGCTCAATCAGA 176633 33 100.0 34 ................................. AATACCCTTCGTATAGTGGGATAAGCTTCTGTGA 176700 33 100.0 36 ................................. AACATCCTTTATTTCCTTGAATGTTACTTTATATTT 176769 33 100.0 34 ................................. TATCGTTTTGTAAAAAGAATAAATATGGGCCGAT 176836 33 100.0 35 ................................. AAGGATATCTCCCGCAATATAGGTATTCCGTAAAT 176904 33 100.0 34 ................................. GGATATATTTATCACTAAACTTGTGAATATTTAA 176971 33 100.0 33 ................................. CACAATGCGGATATCCCCGTCATCATAATAGCT 177037 33 100.0 34 ................................. CCACTGATAGGGGTACTGTGTTTTACCGTAGCCC 177104 33 100.0 34 ................................. GTTTCTGCTTCCAGTTCCGAAGCCAAAGCATAGC 177171 33 100.0 35 ................................. TCATAGAGGACTTCCAGCTTCAGGGAAGCGCCCAT 177239 33 100.0 35 ................................. CCATGAACGCATGTTTTCAAGAATATCCCCCGCAA 177307 33 100.0 35 ................................. ACCTTTTTTGCCGATGAAGGCTTTGAGATCCGAAT 177375 33 100.0 34 ................................. ACCGCAGGAAAGTTTTAATGAAGCGCGTAGAACT 177442 33 100.0 34 ................................. TCCTTACAGCTAATCCATTTTCTCATCTCTTCGC 177509 33 100.0 36 ................................. AACAGACAGCGATGCCTTGTCTAATTTTTTATTGAG 177578 33 100.0 36 ................................. AGCAAAGTATTGTACTCTCTTACCATGAGGAATACC 177647 33 100.0 35 ................................. TTAGATTATTCGGATCCCATTCAAGGGCCGTATAT 177715 33 100.0 33 ................................. TCCTTACAGCTAATCCATTTTCTCATCTCTTCG 177781 33 100.0 35 ................................. TGTGATCTCCGACGCCACTTGTGCATCGTCTTCCC 177849 33 100.0 35 ................................. AGATCAAGAGCAAGCTGCAGGATATCTTGACGACT 177917 33 100.0 33 ................................. TCTTCCCCCAGTAACTCCCCATAGGACAGCCTA 177983 33 100.0 34 ................................. TCCTTTCTGCCTTTGCGGCCTTCATCCCCTGCAA 178050 33 100.0 34 ................................. AGGTCCTCCGTCTTTGCAAGGAGTGCTGCCGCGA 178117 33 100.0 35 ................................. GTATTTATTGACTAATAGAAGCCTCGATAGCTTTC 178185 33 100.0 35 ................................. ATTTGCCTCCGCGAGGAATCTTAAGGGAGAGGATT 178253 33 100.0 34 ................................. ATATCCAGCGGAAGCGGTATTGGCAAAATATCCC 178320 33 100.0 34 ................................. AATACAACGATGATGCAATCTTGAAAGTCATGAA 178387 33 100.0 36 ................................. CATGGATGATTTAACAAAAGGACGGCCGACGGAAGA 178456 33 100.0 33 ................................. TGAAAATTCGGAATCGATGTGACAGGAAGTCTC 178522 33 100.0 34 ................................. TGTCCGGTGCTCCTACGGACGATCTGCAGCGGTG 178589 33 100.0 34 ................................. TGGAGATGGAGAGTATCAGGAAAGCGAGAACTTG 178656 33 100.0 35 ................................. TTAAGCTGCACCGCGTCGAGTGTGTCGTGCGGATC 178724 33 100.0 35 ................................. TTTGTTGCAAGTATGATTGTATATCCTCTTTAAGA 178792 32 97.0 35 ....................-............ CGGTTTTTATTCGCTCTCTCAGGAAACGGGGGCCC 178859 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 89 33 99.8 34 GTCGCTCCCCGCGAGGGGAGCGTGGATTGAAAT # Left flank : GCCTGCACGGAATGTGAGGAAAAGTATGATGATACTAGTGTGCTACGATGTCAATACAGAGACGTCTGCAGGGAAGACACGGCTCCGGAAGATCGCCAAAGAATGCGTGAATTATGGAAGCAGGGTGCAGAACTCAGTGTTTGAATGTATATTGAATAACGCGGAGTATATGATGTTGAAAAATATTCTTGCAGAAATCATTGATGAGAAAATAGACAGCCTGCGCTTTTATAATCTCGGGAACTCTTATAAAGGCAAAGTAGAGCATATCGGGAGAAAGCAGGGAATCCAAGTGGAGGAAGCCTTAATTTTCTAATCTCGATATTTTGGTGCGAGAGTGAAGAGATCATGAAATGACCGAAGGATTCGCACTAAAAAAAATGAACATATCGCGTTCGAAACCGCGGCTTAAGAAAAGGGTTTATCGATTTCGCTGTACATATCGCGGAAAACATGCTATTTTTATCACGAAACAAGAGGTAATATTCATCTGTTTCACT # Right flank : TAGGGGCAGTGGATCATCGAGGTGGGGGAGCTTACGTCGCTCCCCGCGAGGGGATGGGGGTGCGGACAAAAACCTGGACACCATGATACCTGATACCCTTGTGAGAACAGATGAGGTACACCAAGGAGCAGATTATCGTCGCACTGACATTATATAGCATAGCGGGCTCGGCAAATACGGTCAAACAAACACTGGGATATCTTTCAAATCCAATGCTTTATATCTAAGCCACATGTTCGACACTATAAGCAAGCAACAGCCGAATGGAAGGAGCAGGCAATTCGTCGTTGCCTGCTTGATGGCGAGCCTGTAAGATCAATAGCAGAAGATATCGGATACACTGAGTCCATTGTATATCAATGGCTGCGGTCTTACAGAGAAAAGGAATCTGCTTCAACATGAAAAAAGCAAAGAAAACGACTCCCTCCGATCTTCAGGCGGTGGACAATATCGAGGATCTGAAAGAAAAAATGCTTGATATGCAGATGGAGATCGATATC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGAGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCGAGGAGAGCGTGGATAGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.30,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //