Array 1 229315-229108 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAPQ01000002.1 Pasteurella multocida strain C51-17 PMCNF_contig000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 229314 28 100.0 32 ............................ AGCATCGGAAATGGGCAGAGTTGCAGATGTAT 229254 28 100.0 32 ............................ TTTCACTAGAACGCCTGAAAGCAATTTACCCA 229194 28 100.0 32 ............................ GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGT 229134 27 82.1 0 ............A.......T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTTAACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAGTCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCACCTCGCACCAAAGCACCGAAAGAGGGAGAAATTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAACAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCTTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15488-16718 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAPQ01000005.1 Pasteurella multocida strain C51-17 PMCNF_contig000005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15488 28 100.0 32 ............................ TTTCACATTGCCCGCTTTTTGAAACTCGGCGA 15548 28 100.0 32 ............................ TTTCACATTGCCCGCTTTTTGAAACTCGGCGA 15608 28 100.0 32 ............................ TGAGATTGAAGCTCGATTTGATGCAGAGAAAT 15668 28 100.0 32 ............................ TGCAGTCAACCACTTTGATGTAATTAATACAA 15728 28 100.0 32 ............................ TGAGATTGAAGCTCGATTTGATGCAGAGAAAT 15788 28 100.0 32 ............................ TGAGATTGAAGCTCGATTTGATGCAGAGAAAT 15848 28 100.0 32 ............................ TTTCACATTGCCCGCTTTTTGAAACTCGGCGA 15908 28 100.0 32 ............................ TTTCACATTGCCCGCTTTTTGAAACTCGGCGA 15968 28 100.0 32 ............................ TTTCACATTGCCCGCTTTTTGAAACTCGGCGA 16028 28 100.0 32 ............................ TTACACATTGCCCGCTTTTTGAAACTCGGCGA 16088 28 100.0 32 ............................ TGAGATTGAAGCTCGATTTGATGCAGAGAAAT 16148 28 100.0 32 ............................ CTGCAAAGTTTAAACTACTGATTAAACTCGTG 16208 28 100.0 32 ............................ TAGAATCAAACGTGCTGCGGATTTTTCACACC 16268 28 100.0 32 ............................ ATCAATGCGTGTGCGATTTCTTGTTGATGTAA 16328 28 100.0 33 ............................ CCAAATCATCGCCCAAATATCAGGTGTTTTTTC 16389 28 100.0 32 ............................ TTAAAGGCGCTTTACAAGTGGAAGAAGTAAAA 16449 28 100.0 32 ............................ TCAGGAATATTATCTAAGTTATCAAACAATTG 16509 28 100.0 32 ............................ AATCAACTGTTTAAAAGTTCCGCGCTACACAC 16569 28 96.4 33 ............T............... ATCGCGGAGCGATTCTCGCAAAGAACCCGCGTA 16630 28 100.0 33 ............................ AAAAAAGAGCTTGAGTTACTCAAAGCAAAACGT 16691 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCAAAGTGAGTAAAACGCCGTTGCCTACCGAGCACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //