Array 1 429160-430467 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDRN01000003.1 Salmonella enterica subsp. enterica serovar Newport strain 79 NODE_3_length_692403_cov_15.6099, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 429160 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 429221 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 429282 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 429343 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 429404 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 429465 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 429526 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 429587 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 429648 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 429709 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 429770 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 429831 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 429892 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 429953 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 430014 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 430075 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 430136 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 430197 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 430258 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 430319 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 430380 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 430440 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 447137-448752 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDRN01000003.1 Salmonella enterica subsp. enterica serovar Newport strain 79 NODE_3_length_692403_cov_15.6099, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 447137 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 447198 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 447259 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 447320 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 447381 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 447442 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 447503 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 447564 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 447625 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 447686 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 447747 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 447808 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 447869 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 447930 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 447991 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 448052 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 448113 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 448174 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 448235 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 448296 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 448357 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 448418 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 448479 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 448540 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 448601 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 448662 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 448723 29 100.0 0 ............................. | A [448750] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //