Array 1 17019-17524 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOA01000001.1 Levilactobacillus tangyuanensis strain 137-3 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17019 29 100.0 32 ............................. CTTACGAATCCCACACCGCCCCCACACTTTTC 17080 29 100.0 32 ............................. AGTCGAATGGATTACCATTGATCCCTGGTGTT 17141 29 100.0 32 ............................. TGTCCGCCACATGCTCAACGGCATCCCCAGAA 17202 29 96.6 32 ............................C CTATATCACCGTGAAGGCGGCGCGGTTCCTTG 17263 29 100.0 32 ............................. CTGCGCGCTCTGGTGGCCAATTTAACGACCTG 17324 29 96.6 32 ............................C GACTCACGCAAGCAACTATAACCACGTCCTGA 17385 29 96.6 32 ............................C AAAATGGCGGCCATTAATTGGCTGCCCTTTTT 17446 29 96.6 20 ............................A ACTTGGGCCCCATAACACCA Deletion [17495] 17495 29 79.3 0 ......T....A...T.....AC...T.. | A [17514] ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.2 31 GTATTCCCCACGGATGTGGGGGTGATCCT # Left flank : CAAGGGGACTGTCGTTAGTGGTGCCCAAGCGGCTAAGCTGAGTGCTAACACGGATCATGCGCAAAATGTTAACTTGGCTGCGGCCAAGCCAGCGACCTTGCCACAAACCAGTGACCGGCAAATGTCATCCTGGTGGGGTATCGCTCTGTTGGCTATTCTTGGTAGTCTGTTTGGTTTCAAGCGGTCTGAAAAGGATGGCAAGAAAGATTAATTGTTATTAATAATTAATAGATAAAATAAGCCTCCATGGTGGGATCGGAAGATCTCACCGTGGGGGCTTTTTATTAATGGAGATTCTGTAGATGAATAGTGTATTGGGTCAATGTGTCTATTGAATGGATTACCCCATCTTTTAGATTGCAGAGTGATGCACTGATTTCTTTATTGTAGATGTAGAATTGCTGATGTATTCTTAGAATTATTATGTATCGGGAAAGCAAAGTGAATGAAAAAGATAGTTTTCCAAAAATGGAACACTGATGTATCAAGGATTCTTTAGT # Right flank : TCACAAAGAGTTGAATGTTTTTTCAGTGAAGGACAAGAAGTCCTTTTTTTATTGTCCTTGATTATTGGAGGTGAGGTGGAGGGCGTGTGTTTGTTTGAATCTGCCGAGGTGGGGCAGAAATTAATTAAGTAATAAGGATTACAACTAAATGGATAACACTATTGATTATTTTATAAGCGTAATACATTGACTTGCCAAATCTTAATCGGTATCTTCGTGATATGCTCTAAAAAAGTTATGCCAATTAGATATCCAAGAAATGAGGGAGCAAAATGTCATGAATATTAAAGTTTCTGGACAAGCATCAGTGCTTTGGGCTAAGAAGCGAGCAGAGAATGGTCGACATGCCTGGTTACCTGTGATTGTGCACTTGATCGACACACAGAATTCCATAAACTGGCTCTTTAATCATTGGTTAAGTAGGGGGCAACGTGACCTGTTAATTGGGGCATCTACGGAACAAGAGACTCAAAAACTGGTGAAATTTCTGGGCTTTATCC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGGATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27192-28073 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOA01000001.1 Levilactobacillus tangyuanensis strain 137-3 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27192 29 96.6 32 ............................C CTATCGTGAGAGCCTGAAAACCATGATTGACC 27253 29 96.6 32 ............................C TGGCAGCCATCCCCAGTCATTCCGCAAATAAA 27314 29 96.6 32 ............................A AAAAGGGAGATATTTTATTATGAAAAAATCTA 27375 29 100.0 32 ............................. CTAATCTTTTTCATGTTCCTGCTCCTTCATTT 27436 29 100.0 32 ............................. ACAACGGCCAGTCATCCCCCACCCGGGGATCG 27497 29 100.0 32 ............................. GTAAGTTCTGTACTTTGTTTCGTCCACGGTCA 27558 29 100.0 32 ............................. GTTAGCCGCAATTAACCCCATCTGAGGCGGTG 27619 29 100.0 32 ............................. ATGATTCTTGGCCTCACTTGCTACCGCCCCGG 27680 29 100.0 32 ............................. ATCTTAATTTCTTGAAGTTTTTTTGAAATTAA 27741 29 96.6 32 ............................C TTACAGCTTGCTTCTTCTCATCGATAGCCATC 27802 29 96.6 32 ............................C GTAATATTTGTGCCCTACCCGCGTGATCCGAT 27863 29 100.0 32 ............................. ACCAGTCAGAAAACAAAAAATAATCGTTGCAT 27924 29 100.0 32 ............................. ATGTGATGGGACACAAAGGCAACACTATGCAC 27985 29 96.6 32 ............................C GTGATAACCATCATGATGGCAATAAAAAAAGC 28046 28 89.7 0 .................-.......G.T. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.0 32 GTATTCCCCACGGATGTGGGGGTGATCCT # Left flank : GCTGAAGACGAGATACTATCGATTGGGGCTGTAAAACGAGTTATAGATGGTCATGTTGAAAAGTTTTACAAGCTGGTGAAGATCGAGCATGCTGTTCCCGAAAATATCAGAATTTTAACAAATATCACTTCTGAAATAGTGCAAGAACAAGGGGAGCCATTGAGGCTTGGACTACAATCTTTAAAGGAATTTATTGGCGACCTACCGCTGGTTGGTTATAATTTCCATTTTGATGAAATGTTTCTTACTAATGGATTTAGACAAACTCAAATAAATACATTGCGTAATCGAGGAGTAGATTTAATGCCAATTGTTAAGAAAGCGAATAAGTTTCTTGACAATTATCGATTGAAAACAGTTTTGGCAGAGTATGACATCGATAATCAAAAACCACATAATTCGTTATCAGATGCTATGGCGACCTTTGAGTTAGCGATCAAACTAAATGAAAATGGGTCTTTCGAGATTTGAGGATCGCGATATGACGGCTTTTCTTTAGT # Right flank : TTTACTGATCACGATATATTTTCTCAGAATATGAACGGATAAAATTTACCGAATTATTTATACATCGACTTAGTTGACGGTACCTTTCAAAAGGCACATATTAACGTTAATGAACGGTACTTGGCGTTAATGAAAACGTTGATAATTAATACGATGTTATCAATAGTGGCTACCTCACTCACACAACCTTGGAGGAGAAAAGATGATTAAAGTTGGTAAGCTGGTTATGGCAACGATGTCGGCGCTTGTATTAGGCGGTATGATGCCAACAACCGCCAATGCTGCTCGATGGCACAGTGGAACACCTAAAGCCATCCGCGGCGAATTTCAGGCGAAGCGGACGGGGGCACAGGGATTTGGTTCGCGCTATAGCATCACCCGGAACCAGTTTGTCATTGGCATCTCCAACATGCCAACAGAATTTATTAATCATCTCAAGTATCAAAAGATTGGCAATCATCTTTACCGCGTTAAGGGCCATGTTAAAAAGAATGGCATGG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGGATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //