Array 1 2918613-2916203 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038601.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 11-5006 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2918612 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 2918551 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 2918490 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 2918429 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 2918368 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 2918307 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 2918246 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 2918185 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 2918124 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 2918063 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 2918002 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 2917941 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 2917880 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 2917819 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 2917758 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 2917697 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 2917636 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 2917575 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 2917514 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 2917453 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 2917392 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 2917331 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 2917270 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 2917209 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 2917148 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 2917087 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 2917025 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 2916964 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 2916903 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 2916842 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 2916781 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 2916720 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 2916659 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 2916598 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 2916537 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 2916476 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 2916415 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 2916354 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 2916293 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 2916232 29 100.0 0 ............................. | A [2916205] ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2938217-2935158 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038601.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 11-5006 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 2938216 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 2938155 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 2938094 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 2938033 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 2937972 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 2937911 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 2937850 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 2937789 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 2937728 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 2937667 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 2937606 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 2937545 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 2937484 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 2937423 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 2937362 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 2937301 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 2937240 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 2937179 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 2937118 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 2937057 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 2936996 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 2936935 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 2936832 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 2936771 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 2936710 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 2936649 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 2936588 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 2936527 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 2936466 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 2936405 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 2936344 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 2936283 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 2936222 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 2936161 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 2936100 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 2936039 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 2935978 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 2935917 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 2935856 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 2935795 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 2935734 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 2935673 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 2935612 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 2935551 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 2935490 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 2935429 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 2935368 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 2935307 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 2935246 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 2935185 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 50 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //