Array 1 473347-474902 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066552.1 Pectobacterium carotovorum strain 2A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 473347 29 100.0 32 ............................. AGGACATTGCGGGGGCCGTGGGTATTCCTCTG 473408 29 100.0 32 ............................. GCAATATCATAAAGAATCATTAGTTGAGTTAT 473469 29 100.0 32 ............................. CCTGATAGTTAAGATCCAACTCCTGAGCAACG 473530 29 96.6 32 ............................T ACCTGATGGGGCAACAGTCGCCATCGATACTC 473591 29 100.0 32 ............................. TGCCTGATTAATGGTCTGACTACGTGTATCGG 473652 29 100.0 32 ............................. TCGCTGAAAGATGCGCGTGGCAATGGGGCATT 473713 29 100.0 32 ............................. ATGGTAATAGATATCTGGTGGCGTTCTTGAAA 473774 29 100.0 32 ............................. TGTGCCTAAGATCATGGAACCTGAAGTTGCTA 473835 29 100.0 32 ............................. CCATTTGTTTAACTCTCCGCTAAACGGGTGTA 473896 29 100.0 32 ............................. CCTTTCACGTGTTCAATGTTGATGCGGCAACC 473957 29 100.0 32 ............................. AAGAGGTTATCGCTAATGCACCCGTTCGCACC 474018 29 100.0 32 ............................. AAATGCCATCTGTGGATCAGTGGATTCTATGG 474079 29 100.0 32 ............................. TGGGGGAATCAATAGACACCATTAACAAACGG 474140 29 100.0 32 ............................. TGCGGGGTCTCGATCGATACACCAGATGAAAT 474201 29 100.0 32 ............................. CCGCATCATTTATGGCCATTCGTCGAACTACC 474262 29 100.0 33 ............................. AGAAAAGGGTAACAGGAAAGTTAAACCCTGGAC 474324 29 100.0 32 ............................. ATATCCAGATGCAGGTGTTTGACGGCATCTTG 474385 29 96.6 32 ............................A TGCCTGCACGCCTTAGCGCCCCCTGCCATGCC 474446 29 100.0 32 ............................. TGTGGGTGTATGGAAATTTGATAATCAAACAT 474507 29 100.0 32 ............................. GGTAGATGGTACATTCAGAAATGCTGGATATT 474568 29 100.0 32 ............................. CGGCGTGCCTTTTAATAGCACTGATGATGCAG 474629 29 100.0 32 ............................. CCAAAGACGGCAACCGCGGCGTCGATTTCAAA 474690 29 100.0 33 ............................. CAGGCGTGTCCGCTTCTCCTCTTCCTTGCGTTT 474752 29 100.0 32 ............................. TGCCGCATTCAAATCAGGCAACCTCACCACAC 474813 29 100.0 32 ............................. TTTTCAGTCAAAGCGCGTGATGTATATATCGA 474874 29 93.1 0 .............T.............T. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGACGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTCCCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTACTGGAAGTTCGCGCAGGCGTGTATGTCGGCGATACCTCACAGCGAGTGAGGGAAATGATCTGGCAGCAGATTATCGAACTGGCAGAGCAGGGCAACGTGGTCATGGCGTGGGCAACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGTGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTACGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGA # Right flank : GATGTGAAATGTAAATTACACATGTTTCCATATTGTCAACTCGTTCTGTTTATGGCATGGTGTTTCCAATTTGGAAATACTAGGGAAGGCATCAGAATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCTAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTTGAGCGAGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCCGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 477111-478543 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066552.1 Pectobacterium carotovorum strain 2A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 477111 29 100.0 32 ............................. CGCGTTATACAGCTTTTCGCTGATCGGCACGG 477172 29 100.0 32 ............................. TCAGCAAAACGAAAGAAAAGCACACCGCTGAA 477233 29 100.0 32 ............................. GACAGCGACGGATTGATAACCCTATTCCCTCC 477294 29 100.0 32 ............................. AAATTCAGCGACTCAGAACTTGCATCTATGAT 477355 29 100.0 32 ............................. AAATCAGCAATCTCACTGAATATCAGGTTGCT 477416 29 100.0 32 ............................. GATATGTCAAAGGCCGTTTCCGCCTGGGCGTC 477477 29 100.0 32 ............................. GCCATTTTCAGGGTTGCCCCGTTTAGCGAGAC 477538 29 100.0 32 ............................. CTACGTGGTTTTAGTGGGGAAAATGAGCAGGT 477599 29 100.0 32 ............................. AACGGGTTGAAATACAGATCTGCTAAATCATC 477660 29 100.0 32 ............................. TCACCATCCCAACCCTTGAGCAACATTTCATT 477721 29 100.0 32 ............................. GTTGCCGACAAGCACGGAATAGCAAAGTCCAC 477782 29 100.0 32 ............................. AACCGGACGATCCCCATATCTGAGGACGTTTC 477843 29 100.0 32 ............................. CCCTATAAACTAATAGAAGAGTAACCCAGCAA 477904 29 100.0 32 ............................. CGCGAACGATCGCAATGTTGGAAATGCAATCT 477965 29 100.0 32 ............................. GTTGCCGCATCAGCATCGGCGGCGGTACACAC 478026 29 100.0 32 ............................. AAATGAATTTCATCGACGTTGATAATGGTGGA 478087 29 100.0 32 ............................. CAAGCTATCGCGTTGTGATTCCGCATCACGAA 478148 29 100.0 33 ............................. CGTTAACCCCCCCACCATTTTCAGTGGGGGAAC 478210 29 100.0 32 ............................. CATTATCGCAAACGAGGTTTATTAGATGGCAG 478271 29 100.0 32 ............................. GATTTGTTTCTTACAATGTCCACACATTGACC 478332 29 100.0 32 ............................. TATTGCCGGAACAAGGTGGACACTGCGAGGAT 478393 29 100.0 32 ............................. TGACTACCAGAAATCCTGCAATCATCGCGCCT 478454 29 100.0 32 ............................. AACTGATCGAGCGCCGCTGTTTCGCTATACAT 478515 29 93.1 0 .........................C.T. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGCATTCTCTGCTAATTATTTACTGTGTTACTTCAAGACGACGGATATGCATTGATTGCTTCCAATTTATGTCAATATGCTTGTAATCATTAAATATAGTGGATGAAAAACCTTGGTATTTACAATATATATTGAAATTCGGTTGAGAAAGAATATTTTTAACAGAGAAGTTCTTTACCTAGAAATAGAATCATAGTGGTATAACTCTTGCAAAAGTGTACAGCGTTTAATTCAGCGACTGAGCGTTTTCCTGCTGTCTGAAATCAAACTGGCAAATCAGGGAAACGTGGTGATGGTGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTATTATAAAACAATGCTCTACTTTTAGA # Right flank : GGGCTTATCCCCCTTGTTGCATGTTGGTCTAAATATCCCCCGCACGGGGCCAAATCCCGCTTTTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTTGTGCTCACCGTAATGGTGACGCGCTATGCCAATGATTTTTGTCTTCCGTACGTTACTGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGCCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCCGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGGCGGTTGGGGCGTGAAGAAGGCTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGAGGAAGTATTCCGCCTTCCAATGTGTTCCAGCCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 958654-958388 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066552.1 Pectobacterium carotovorum strain 2A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 958653 28 100.0 32 ............................ TGCCCGTTTCTGAACGTGTTATGTCATTCAAT 958593 28 100.0 32 ............................ AGCCCAGCGAGCAATGATTTCACGACTCTAAA 958533 28 100.0 31 ............................ ATGGAAGAGTAGCGCTTGCTGGCTATGGTGC 958474 28 92.9 32 .............C...T.......... ATGGGGCGGCGGACTCGCGAAAAACGGCTAGT 958414 27 82.1 0 ...........T.C........-...TG | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACACTGAAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGCGTGTACAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCAGTCAGCAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGGATTCCCGACGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGCCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACATCCCTGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTGCGCCAAAAAAGCCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAACCTTAACG # Right flank : CTTATCGGGATGCGTCGCTGGCGCGACGCATTTCGTGGAGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGACTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGACTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTGGGGTCAGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAATATCTGCATCAACCCGACGTTTATCTGGCGCAGTGCGGTGACCTGCGCCAGTATCTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTTAGGCGGATTTCATATTGCGTCCACATCGGAGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGGT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 967227-968454 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066552.1 Pectobacterium carotovorum strain 2A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 967227 28 100.0 32 ............................ AGTGCGGCACCAAGAATCGTCTGGAACACGCC 967287 28 100.0 32 ............................ CGCGACGCAGTTTCAGATATACAGCAGGTCAG 967347 28 100.0 32 ............................ ACAGAACATCCTCATTGTGTGGCTCACAAAAT 967407 28 100.0 32 ............................ GATATCCAGAAAGGGGCGCGGTGGTAACGTGA 967467 28 100.0 32 ............................ AGCGACGAGCTGTACGAGTAGAAACCCCTTCC 967527 28 100.0 32 ............................ ATCACCAGCGGACGGCTGGAGTACGACACCAG 967587 28 100.0 32 ............................ TCCGGCTGCGCCACCGCCAGCACCGCCACCTA 967647 28 100.0 32 ............................ TCAGATACAACGAAGAAAACATTCACAAGCAG 967707 28 100.0 32 ............................ AGTGCGGACTCGGTAGCGCTGGCAGGTATTAA 967767 28 100.0 32 ............................ AGGATAACTCACATTAAGAGGGATTTAGTGTG 967827 28 100.0 32 ............................ ATCTGCTTTTTAGATTTTGCATGCATTGCTAA 967887 28 100.0 32 ............................ GTCGTGCTCTGCGGGTAAGGTGAAATCAGAAA 967947 28 96.4 32 ...........G................ TTCTGCCTGTGGATATAGAGCACGCCATGGAT 968007 28 100.0 32 ............................ AGCTGCGACATCCTCAATCCACTTAACCTGAT 968067 28 100.0 32 ............................ AGCAACGGTTAACGCTGGTACAAACGTGCAGT 968127 28 100.0 32 ............................ ATTTTGTTTCGTCAGAGCCTGGCACAGACGTG 968187 28 100.0 32 ............................ TGATTGAGAGCCAGCAGACCTGCGCCCGAGCC 968247 28 100.0 32 ............................ AATGACTGACGATGAGCGTGTAGCGATTATTG 968307 28 100.0 32 ............................ AAATGGAAATATTGCAGCACACGCTGGGAATT 968367 28 96.4 32 ...........C................ GGCGTACTGCAATGACTGGCCGGATGGCATTT 968427 28 78.6 0 ...........C.C......T...TCC. | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTGTGACGGAGGTGCCGGTCCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGAAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAGTGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAAGCTAATTATTTAATAAGAAAAAATGTAATCTTCAGAAAACTAACGGAAATCAGACTATCACAGCCGTATATAAAAAATGATGACTGCAAAAAATATTACCGAGACGCAGACCCTTTTTCTTTGGCCTATTTCACAGGCTTAACAATCAACGAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGTGGCGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCTGGCAACG # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGACCTTATTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGCAAATTGTGTATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTACCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCAACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGACTCTTGGAAAACAGCGATATTTGGCTGTACCGATCCTACTTCATCGTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 976502-975333 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066552.1 Pectobacterium carotovorum strain 2A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 976501 28 100.0 32 ............................ TACAACGTTACCACTCCTCACATTATTGCTAT 976441 28 100.0 32 ............................ AAGCACTGAGGCGACTACGGCGCGGCATATGG 976381 28 100.0 33 ............................ CAGAAAATAATGGGGAGATTGGTTAATATCGGA 976320 28 100.0 32 ............................ TGCACCGAATAACCGCCGCTCGGCGTTCGCTG 976260 28 100.0 32 ............................ GCATTCTCCGCAACCAGCGCATCCCGCTGAAT 976200 28 100.0 32 ............................ TCATGATCGAAAACAACCTCGCCACCAAGAGC 976140 28 100.0 32 ............................ TGTAGCGCCAACTGCCCTAGGACGGGCGTTTG 976080 28 100.0 32 ............................ TGCACCAAGAGACATTGCTGAATACATCGGAC 976020 28 100.0 32 ............................ TTCTTCTGAGGATGGAACGATTTCTTTCACTA 975960 28 100.0 32 ............................ CGTCACCGTTGTGGTGCGTGTGGCCGAGGGTA 975900 28 100.0 32 ............................ GATGCGGAAGACATGCCCGATCAGGTGCGTGC 975840 28 100.0 32 ............................ ATCTACAGAACGGATGGTACATTCAGCAGTCC 975780 28 100.0 32 ............................ AAGAAGGTGAAAGAGTTTGTTGAAACATTGAG 975720 28 100.0 32 ............................ GTATCACATATCCAGCCTGATGGCCAAAATGC 975660 28 100.0 32 ............................ ACTGCGGATAACGTGAATTTCAAAGTCCCGGC 975600 28 100.0 32 ............................ GTTAGCATCAACAGAACCCGTGTCATTCTCAT 975540 28 100.0 32 ............................ GACACGACAGACGAGCGAATAGCGGCGAAATC 975480 28 100.0 32 ............................ TGCCCGGCGGTATGGGCGCGGGTTGCGGCGTC 975420 28 100.0 32 ............................ ATCGCAGAAAACGTGTTATCTGACATATCGCG 975360 28 89.3 0 .............C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.5 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATCCTGGCGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAAAAACGAATGCCAATTGGGTTTGACCGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGTGGCAAGCGAATGGCACGGTTATTACCGTTTTTAAAAACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGAAATTCAGCCAGCTACTTACCGTTTATTATTGCTGGCTAAAACATAAGCTAAGTATAGATATTAACCACTCGATTGTATATCCATAGCATATGCAGATACCTGGCATAGACCTATTGACGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTTAATTTCGATTATCTACGCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAACG # Right flank : GTTAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCCAATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCAGTCGGGTTGGAATGCCTAGGGTTAATTGAAGTGCGGTTGATCAACCATACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAAAACAAGAGCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 3327080-3325952 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066552.1 Pectobacterium carotovorum strain 2A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3327079 29 100.0 32 ............................. GGATAGATTAGCTTTATTAAACAGGATTACAT 3327018 29 100.0 32 ............................. CACACGATCAGTGAATAACGAAAGCAATTCTT 3326957 29 100.0 32 ............................. CGGTGTGAAAAAAGACATAGAGCGGCTGGAAA 3326896 29 100.0 32 ............................. GATAGCCCTGACCGCCTGCCGTGGCGTGCGCA 3326835 29 100.0 33 ............................. AATTTACTTATTTCTTCGTACTCTTCTTCTTTA 3326773 29 100.0 32 ............................. CTGGTTCGCCAGTTTGCGCAGCTCACGCCAGA 3326712 29 100.0 32 ............................. CACCTGTTCGCCCACTGACAGCGGCCACCACG 3326651 29 100.0 32 ............................. CTGTTCTTTCAGCTCGGTTAATGACTTACTCA 3326590 29 100.0 32 ............................. AACTCGCGGTTTTTGCGGCGCTGCTCCTGCCA 3326529 29 100.0 32 ............................. GCTACAGTAAACCATGAGCGCGATAATATTAG 3326468 29 100.0 32 ............................. AACTATCGACCATGCGCGGTGCTGATTCCGGC 3326407 29 100.0 32 ............................. TATGCAGGAGAAAAACGATGGCTGAACGGCAC 3326346 29 100.0 32 ............................. TCGTCCCAGTAGCAAACGAAAACCGCCCCCGT 3326285 29 100.0 32 ............................. GTTGGCATGGCTTAAATCCAGATGGAGGTGAT 3326224 29 100.0 32 ............................. GCACCGCCGATGCGGCCAGCGTGGAATTTATC 3326163 29 100.0 32 ............................. CGATCTCGACATACTTGTCGATACGACACCTA 3326102 29 100.0 32 ............................. GTGGCTTGGATGGCACTCGCATCTTTCTCGAC 3326041 29 100.0 32 ............................. TTACTTAATGCCATTTCACACCCCCGGCGCTG 3325980 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 100.0 32 GTGTTCCCCGCACACGCGGGGATAAACCG # Left flank : TCTGTTGCGCCAGTTAGCATCTGCTGTACGTGAACGTCGTAGCAAGTAACGCTGAGTGACGTGCTAACTAACTGGCACGTCATAAAAAACGTAGGGAACGTTTTTCAATGTCGCTTGCGACGGTTCTAAGGGAGGAAGAACCGCTACAAACTCGGTGCTAATAAATCAAAACCCTACTTTTTCAGGTTCTGCTCAACGGGGAATGTCTCAGGATATTCCCCGCTAATATCAGATATGGGGAGCGCATCGCGTGCTTTCACCGTATCAACCTAGCCTATACAGTCTTAAGTATCATTTTAACAGAACACGCACCACGCTAGCTTTCAGCCTATTGAATCCTAAATGAAAATCATAGCAGTTCGGTAGAATAGAATGGGAAGCGCATTGTCTCTTTTTTATCTCTTTATAATCAACTGGTTATAAATATATAGCGGTGTTGGAAAATCGGTGGGATTCTTTACACTGAAAAAAGTGTTATAAAACAAATCTCTATATTTAGA # Right flank : TGTGGTTACCCACTCCAGCTAACAGTATTACGCCCGGGGTGAGCGAGGAATTCTGTAATAGTCTGAAAGTAGTGGGTGCACCACGGTGTAGAAAGGTATTTACTCAGCAGGTGGTTGATGCGTTTTATTTTGTCTTTTACCGGTGCAGTTTCAGAAAGGTATTGTTCGATACAGGTAAGTGAGCGATGCGTCATGCGTTAAAGCCGCGTTAGCGTCGAGAGTAGATGGTATAACGCTATGCCTGTTTTTTACCCGGCCATTACTATAGACCGCCAGTAATGGCCGGGTTTTTCTCATTCAGGGGAAAATTATTTCGCTTTACCCTGATTCGCTACTGCGGCAGCTTTTGCAGCGATTTCGTCTGCGTTGCCCAGGTAGTAACGTTTGATAGGCTTGAAGTTCTCGTCGAATTCATAAACCAACGGCACGCCAGTTGGGATATTCAGTTCCAGAATTTCGTCTTCGCCCAGGTTGTCCAGGTATTTTACCAGCGCACGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //