Array 1 184120-184331 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHVK01000003.1 Microvirgula aerodenitrificans DSM 15089 Q352DRAFT_scaffold00003.3_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 184120 29 100.0 32 ............................. AACGTCGACGGGCTGCAGTTCAGGCGCGCCTG 184181 29 100.0 32 ............................. TCGGCCACGCTGTCAGCCAGGTTGCCGACTGC 184242 29 96.6 32 ............................C GCCATGGTCCGCATCAGGCCGACCATCGACCC 184303 29 96.6 0 .........A................... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGTTCCCCGCGGGTGCGGGGATGAACCG # Left flank : GCAGCAAATAACGAAATTATAGGCATAAAGAATGCGATAATGGCTGCCAATAACCCGAGTGATTCATTTATGGCAAATAGCGACACAATATGACTTGAAATAAGAGAAACAATGGCACATGCAATAGCCAGTCCGGATAATTTTTCTCTGATGTTATTTTTTACAAAAAAAGAAATTAATATTAAAAGCGCCGTAGCTGCAAAATTAAATTTCCCAACATAAACGAGAATTAAATAAAGAGTATTCATGCATTCCCCATTTAATAATTAATTGTGTATGCTAAATTTATTTAGCGTACACTTTCCGCGTGCCGCTGTCATCTGATGTTGCATGCCACCCGACCGTCAAGTTGACAGTCCGTGTCCCTAAGCTGGACAGCACGGGGGGCTGGAACCGGATGTGGTAGAACTGCTATGGTGTAGCCACGGTTGCGGTGGCAAAAAGTTGGTAGATTTTCATGGTGCCAATAAACTCTTTTTAATCAATTGGTTATTTTTAGA # Right flank : GCCCGTGAGCGGCCCGCCTCACTGCACTTGAGAGCAGGATACAGATGCCGCTGCTACTCGAATGAAGGCCCGCCTCTTGGCGGGCTTTTCGTTGACACGCCGCCCGCCCGTGGCGATACTGCGGGTTCCTAAACAGTTAAGCGCCGGCCGGCGCGTCCGCTACCTGCGGAAAGCCGGTTTTTTGTTGCCCCTCTTTCGGCGTGCGTGCGTCTGCGCGCGGCCATACCGGTCGATGGGGGCTGCGGGTACCCGTAAGGGCCCGGCGCTCGCTTAGCTGGCGTAGGACAGCCCCCACCCCTGCTTGGGTGGAATTCCTGAAAAGCTAGGAGGCTACCCATGGCCGCTCAAACCCTCGTCCCGGTGTTCGCCGGAACCATCAATAATGAATCTGTCCTGCTCTGCGACGCTCGTCTGCTGCATGGATTCCTGCGAGTTGGTCGCCGGTTTGCGTCTTGGATCACTGAGCGCATCTCCGAGTACGGGTTCGTGGAAAATCAGGA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 91442-92572 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211072.1 Microvirgula aerodenitrificans DSM 15089 Q352DRAFT_scaffold00006.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 91442 29 100.0 32 ............................. TAACCTCTCTTAGGGATTTTGACCGTGGAATA 91503 29 100.0 32 ............................. AACGAGAGGTGCTTTTGATGGATATGAGTAGT 91564 29 100.0 32 ............................. CAGGTGGCAACCGACTACGCGCTGATCCGCAA 91625 29 100.0 33 ............................. TCGCCGGTATAGCGCCCGAGGTCGGGTGCCCAC 91687 29 100.0 32 ............................. CACGACATGAGCAGGTCATGAGCGGCACATGA 91748 29 100.0 32 ............................. CCAACTGAACGCGATACAGAGGCATTGCGTAG 91809 29 100.0 32 ............................. GACGCACAAATGCTTGCCATACGGTTCGCTAA 91870 29 100.0 32 ............................. AGGCAGGTACTTTCCCCGGTAGAGGTCTACAT 91931 29 100.0 32 ............................. ATTTCCGATGCTGTTTGCCTGCAGCCCTTTAT 91992 29 100.0 33 ............................. GACGTTGACGGCCTGCGCAGGTCTTATGCCAAG 92054 29 100.0 32 ............................. TTGGGAGAACCGGAACGCGGCAGCAGCGCCCT 92115 29 100.0 32 ............................. GACGACACCCACCTGCGCAGCAAGTGCCTGGA 92176 29 100.0 32 ............................. AAATCGCGCGACCGCATTGACGGCATCGTGGC 92237 29 100.0 32 ............................. TCGATCCGGCTGCACAAAGGCCGCTTCGAAGG 92298 29 100.0 32 ............................. CCATAGATTCGTATGAAAAAACCGTGAAAATC 92359 29 100.0 33 ............................. GCGAACGGCGCAGCAATCAGCCGCGTTGCTTAC 92421 29 100.0 33 ............................. CACGCCGACCGTGAGCCGGAATGTCCCGCGCGG 92483 29 100.0 32 ............................. AAAACCCTTTCCCGCGCGCAATTCAATCAGCT 92544 29 96.6 0 .......................A..... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.8 32 GTGTTCCCCGCGTACGCGGGGATGAACCG # Left flank : TCCAGATCGAGACCGCCGGCCATGACACCCCGGCCGATACGGCCGAGGAGACCCCGGCCGCCGAAGCCCGCCGCCGCGCCGACGTGGCCCAGCCCGCCGCTGCCGGCGACGCTGGCCAGAACGGCCTGTCGCAGGTCGAGACGCGCCACTAAGCGGAAATCCGTCAACCTTCTGCACGCAGGGGGTTGACGGAATCAGCAGGCTTCCGTAGAATCTCTTTTCTCGATTCCCCGATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGAGCCCAGGTCGGGGAGCCAGAATTCAAACGCCGTGAACGCATGTTCACGGCGTTTTCATTTGTGGATTGCCGGGAGAAACAGGCCGGATGGCTGCCGGTGTGCGAGGCTGCTATCGTACTGGCTGCGGTGTGCATGAGCCCCCTTGCCGGGGGCTGAAAATCGGTAGATTTTTGCTGTGGCAAATAATCGTTTTTAATCAGGTGGTTATTTTTAGA # Right flank : GCTTGCGGGCCTTGCCTGCATCAGCGTCAATGGGGGGGCCTCGCTCAGGCGAAGAACGGCCGAACGGACCCCCGCCGGGCCTGCCTGCGATCACGCCAGTCGCTTGACCAGCAGCAGCCCGCAGCCAAATGCCTGGGCGTGGCCGAGGCTGGCGTTCTTTCCCGGGAGCGGCTGGCCCAGCATTGCCTGGGTCAGACGCTCCGGGTCCTGCACGCGCGCCATGCCCTGATAGTCGACGCTGGAGAAGCGCAGTTCCCGGCCCTTGCTGCGCAGAACGTGCTGGCAATAGCCATCGGCCTGGATCTGGTCCGGGTCGATCTGCAGGCCCCAGCTGGCAGCGCGCTTGTCCAGCCAGGCCAGCGCAGCCTGCCGGATTGCCTGCTGCAGTGACTCACCCTGCAGCCCGGCCTGTCTGGCGAGGGTCTTGGCATGCATGAGGACGTCGTGACGCTTGCCGCGCTGGTCGGGGGCGCTGGCGATGGCCACTGTCGGATTGGCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 104518-105766 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211072.1 Microvirgula aerodenitrificans DSM 15089 Q352DRAFT_scaffold00006.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 104518 29 100.0 32 ............................. CCTGCAAATTAGAAAAACTGGCCAGCCGCTTA 104579 29 100.0 32 ............................. ACATTCTCGACATGCTGGAGACCCTGCGCGCC 104640 29 100.0 32 ............................. CGCGCCATCAACACGGCCGCGATGCGCGCGCT 104701 29 100.0 32 ............................. CGGATTCCTCCAGTGGCCCTGGCTGGGCCTGG 104762 29 100.0 32 ............................. CAGGCACACGCTGCATGCCATGCCCGCTTTGG 104823 29 100.0 33 ............................. CACTGCCGCGCCGATCTGGCGGACGAGGCCGAC 104885 29 100.0 32 ............................. GTCATGCCCCGGCTCTCCATCCTCTCGATTGA 104946 29 100.0 32 ............................. CGTCCGGACCGCTTGTTGATCCGGGTCAGCCA 105007 29 96.6 33 ............................A GGACGCACTCGCCGCGCGACTGGAATGCCTTGT 105069 29 100.0 32 ............................. CCGGAGCATGGACAGCGGTAGCAGACCCGTTC 105130 29 100.0 32 ............................. CCCATGAGTGCGGGCCTACAATCAGCCAGCAG 105191 29 100.0 32 ............................. TCAGCCAAATACGGTGAGTTCAGTGCGCCGGC 105252 29 100.0 32 ............................. ATTGGATTAGTGAAATTCATAAAAAGGATTGA 105313 29 100.0 32 ............................. AAATCTGGACGGGCCAGAAAGTGACCCTCATC 105374 29 100.0 32 ............................. GGGCACTATAGATGTTTGAGCGTGTTTGTCTG 105435 29 100.0 32 ............................. TCGTCAGTCACGATGGACAGATTCCACCCGCG 105496 29 100.0 32 ............................. AATTACGTTACCGAGGTTGTCGAGGGTGTGAA 105557 29 100.0 32 ............................. GACTACGTCATCGGTATCGTCTTGGAGGACAT 105618 29 100.0 32 ............................. ATGTGATTGCGCTGCTGGCCTATCTGACGGCT 105679 29 89.7 31 ............TC..............A GATATACCGGCATTTTGGTCATGATCAAATC 105739 28 75.9 0 .........T.C.G........-...AAT | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.2 32 GTGTTCCCCGCGGACGCGGGGATGAACCG # Left flank : GAGCGGATCATCCCCGATATCGAAGAACTGCTGGCGGCGGGCGGGCTGAGCGTGCCGGTCGTGGACGGGGTGGTCGAGGTGGCGATTCCGGAAGAGAAGGGGCTTGGCGATGCTGGTCATCGTACTTGAGAATGCCCCGCCCAGACTGCGCGGCCGCATGGCCATCTGGCTGCTGGAGGTACGGGCCGGCGTCTACGTTGGCACGTACAATCGCAAGGTGCGTGAATACCTGTGGCAGCAGGTGGAAGAAGGGCTGGAGGACGGCAATGCGGTAATGGCCTGGCAAGCCGCCAATGAGGCCGGTTTTGAGTTTGTCACGCTTGGTCGCAATCGACGGATGCCGGTCGAATTCGACGGCGCCAGACTGGTGTCGTTTCATCCTCCGGATTCCGGTGACGTCACAGCCTAGGGTGGTTTGACGCTGACCTTGGGCAAGGCAAAAAGTTGGTAGATTTTCCGGGTGCAAAATAGTCTTTTGTAATCAATTGACTATTTTTAGT # Right flank : TACCCACTTCCCATGACTGCCGACCCGGTACGGAAGCGACCAGAACAAACGGGCAACCCCGTCCATTCCCTCCCGGGAATGCACCGGATTGCCCGTTCTGGCTTGACGCGACCCTCTACCGTCGTGCCAGCCCCCTGACCACGGCCACCAGCTTGTCGACCTCTTCGCAGGTGTTGTAGAACGCCAGCGACGGCCGCACCGTGGCTTCGACGCCGAAGCGGCGCAGGATCGGCTGTGCGCAATGGTGGCCGGAGCGCACGGCGATGCCTTCGCGGTTCAGCGCGTCGCCGACTTCCTCCGGTTTGTAGCCCTGCAGGACGAAGGATGCGACGCTGGTCTTGTGCTGCGCGGTGCCGATCAGGCGCAGGCCGGGGATGGCGCGCAGGCCGTGGGTCGCGTATTCGAGCAGCGCGTGCTCGTAGGCGGCGATATTGTCCAGGCCCAGCTGCTCGACGTAGTCGATGGCGGCGCCAAGGCCGACGGCGTCTGCGATATTGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //