Array 1 1584-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGED01000041.1 Saccharothrix sp. NRRL B-16348 P442contig135.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================== ================== 1583 35 77.8 37 T.CT........T..G..A..T...-.......... GCTTCGCAGTGGGCGACAGGAATCCAACTCTGAACTG CG [1574] 1509 36 83.3 37 G.......T...TC.G..A................. ACCTGTCCCGCCGCCGTGAACGGGCCGAGCATCGCCC 1436 36 88.9 33 ..............TA.............C...G.. CGGATCGGCGCCGTGATCTCGGCGTACTCCAGC A [1417] 1366 36 91.7 34 ...................ACT.............. GGGAAGCGGACGTCCGTGAGGACCACCGGCCTGG 1296 36 86.1 35 G.G..A.........A.......T............ CGCTCGAGCGACCGCTTGGTCGCGGCGACCTTGGC 1225 36 97.2 35 .........A.......................... GAGGACTACATGGCCCGCCTCCACCCCGACACCGA A [1209] 1153 36 94.4 56 .........A......................A... GCCGGGCTGGTGTACCAGTCCGTTTGGCTCAAGAGTGCCTCGCCAGCCCTTCGGGA A [1134] 1060 36 66.7 37 .TG.A.AGGA.T...G..C.C..T............ TACCCGCAGGGCCGGGATGCGCACCGACGCGATTGGC C [1051] 986 36 77.8 35 .......GG.T....T....C..T.C....T..... CCCAGTTGGTCCGCCACTACACCCACGTCCAGGCC A [967] 914 36 77.8 36 A....A..G..T........AC.GA........... ACCTCGTGGCCGTGCAGCGCGAGTTGCGAGAGCCAG T [901] 841 36 86.1 36 G......TG...........CA.............. CGCGAGCAGAAGATCGACCGCCTCGGCGGCTACGGG G [825] 768 36 86.1 34 G.........T....G....C.....A......... ACCAGCGCCAACACGACCAGGTACCACAGGGCCG 698 36 91.7 36 A..............T....C............... GCCCAGTCTGTGCTGGTCGCGGTCGTGACCGCCGGA G [682] 625 36 91.7 34 ......T.......T..............C...... GGCCGGGCGCCGGTGCTGCAGCACGACGTTGACC A [606] 554 36 97.2 37 ...........T........................ GTGAGGTAGAGGTAGAGGTTGTCTGAGGCGATGGATG G [538] 480 36 97.2 35 ..G................................. AATCCCGACGGCGGACCGGACGGCGACCGCGAACC A [462] 408 36 100.0 38 .................................... TACCTGTGGGTGTGGCGAGAGTTCAAATGCTCTCCGGA A [389] 333 36 100.0 37 .................................... ACCTGTCCCGCCGCCGTGAACGGGCCGAGCATCGCCC A [314] 259 36 97.2 36 .........................G.......... AAAAACACCGGGTGGGCGGAGGACGCGAAGTCCAAG A [240] 186 36 100.0 35 .................................... CCGCGGACCCACAAGCCGTCGTTCGCGTAGGTGTC A [167] 114 36 94.4 34 ......................T.........T... TGCGCCGCAACGAGGTTGGTTTGCACCGCGTTGC A [95] 43 36 77.8 0 ..............T....A.........AGC.CGG | T [15] ========== ====== ====== ====== ==================================== ======================================================== ================== 22 36 89.1 37 CCAGCGCCAGCCCTCCGGGCTGGCGAGGATCGCAAC # Left flank : GGGGAACCAGGGCCGTCCGCATCATGTGGGCGGCCCTGGTGTCGCTTTTATGTGCGGAGAATAGTGTGTCGATTCCGCAATTTCCGGCTTTATTGGTCAATGATGTGTCGGCTATCCGTGACCTGTGCGCAGACATCCGCGCTTCATCTGACGACACCCGGCGTAAGTTACCAGAAATCGTTGGTACCCGTGGGGCGTGCATCCCCCATGGAGTGACGAGTGGCGACACCAACGTGTGGCTACCGAGGCCCGACGGAGCCTTCGTTACTCCGAACGGCGCACAGTGATGGTGGGGGTGCCGCCTCTCCGTGGTCACTGACGCCGTTACTGTCCGCCCATTTGGGGTAGTCACACTTTCGAGTGATGTTCCCTGATAGTGGCTGCTCAACTGCTTACTCGGGTAGTGCCAGGACGCCTCGCCGTGACTGCCCGCGGGAGTCGAGGCGCCTGGTCCGAACGAGGCCGTGTCCCGCGGCGCCAGCCGCTCCCGGACTTGCGAT # Right flank : GTGAGAG # Questionable array : NO Score: 4.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCGCCAGCCCTCCGGGCTGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [12-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6173-4839 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGED01000278.1 Saccharothrix sp. NRRL B-16348 P442contig98.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================== ================== 6172 37 100.0 37 ..................................... AGGTACGCCTCGTTGAAGTCCAGCCGCGCCGGACTGT 6098 37 100.0 35 ..................................... CCCAGCAGAAACGCAGGGGAGTCCGTCTGCTCGAT 6026 37 100.0 37 ..................................... TTGCGGTAGCGGCGGACCGGGTTGACGCCGTCGTCGA 5952 37 97.3 59 ...................................T. CGGGACTGGCGAGGATCGCAACGGAATGTCCTGGAAGTCCGCCTTGAGGCGCGAGACGA 5856 37 100.0 34 ..................................... GTTGACTAGTTCGGGAGGTGCTGCGCCTCGGACG 5785 37 100.0 34 ..................................... GTCCTGCCCGCACAGCATCGCCGCCTCCCGCCAG 5714 37 100.0 36 ..................................... CCCCGGATCCCTGTCGACCGGCACCCGCCCCGGCCG 5641 37 100.0 38 ..................................... TACCCGGCGACCGAGGGCGTCGTGGTCACCGCTCGCAC 5566 37 100.0 34 ..................................... TCGCCGCCCAGCTGGTGCGGGCGGTGCGAGACCG 5495 37 100.0 34 ..................................... TTGGCGTCGAAGATGCCCACGGGGAAGCCTTTCG 5424 37 97.3 38 ............................A........ TCGTGGGTGAGGTGGGAGCGGGCAGCCACCCCTTCGGG 5349 37 100.0 37 ..................................... GACAAGGCGTCGGGCAAGTGGGTGGACGACCCGGCCC 5275 37 100.0 36 ..................................... CTGGTCGACCTGGCGCAGCTGTGGGCCAACAGCCCG 5202 37 100.0 36 ..................................... TTCACGTGGACCGAGGGCACCCTCGCCTACCTGTAC 5129 37 100.0 37 ..................................... GCCGGCGAGCACCACGCCGACGAGGCGCTGTCCGCGC 5055 37 100.0 35 ..................................... TCCGACAACCCCGAGGTGCTGGGTGTGCTCGGCAC 4983 37 100.0 72 ..................................... AAAAACACCGGGTGGGCGGAGGACACGAAGTCCAAAACTGCGCCGCAACGAGGTTGGTTTGCACCGCGTTGC 4874 36 81.1 0 ..............T.....T.........A-..CCG | ========== ====== ====== ====== ===================================== ======================================================================== ================== 18 37 98.6 39 CCAGCGCCAGCCCTCCGGGACTGGCGAGGATCGCAAC # Left flank : ACACCGGGTACAGAAGTCCGTCTTCGAAGTCGTCTGCACCCCAAGCCAACGACTCACCCTCGAAGCACGCCTTCTCGCCATCATCGACCCCAGCCGCGACTCGGTCCGCATCTACCACCTCGACCGGGGAACCTTTGACACCGCCAAACACCTCGGAGCCGCCACCGACGCCGCACACCGGGAACCACTCATCATCTGAAGCCGCACACGCCACGCCCCGAACCAACCACGATCGACACCAGCGAACCCGCCGCCAGCCGTGCACACTCCACCAGACCGGCAACCGTCGTCGGACCTCGCCGCTCATACCATTACGCAGGACAGGACCCGTCAGCCGAAGAGCCCGCACACCAGGTTCCGGCGGACGAGGCGCTTCGGAACATCATGCGTGTCACGACACGCCGAGAGGTTCCGAAGCCGGCAACGGCGTGTCGTCTCAAACAATGAGATTGTCGGCGCACTGTGCGCGGCTCATCTCGTATTTGAGCTGCTCACCCAGC # Right flank : GTGAGAGCGTGCACCACGGCATTGTCCGTACCGTCCGGGGTGCGGTGGGCGGCTCAGGCGTTGTGAGGGTCGGTGTCGGTGGGGTTGTTGAGTTGGCGTTGGGCGCGTTCGGCATCGATGTCGCGGCCCGACTGCCGGTATACCTCTAGTGCCTGCTGTCGGGCCGCGGCACCGCCACCGACCGCGCCCAACGCCAACTCAACAACCTCGACAGCCGAGCTGGAACCGCAACACCAACCCCGCCGACTGGGCTTGCACGATCGACTCTCGCCGTGGCTCGACCTCGTCAGACGCTCCACCCGTTAGCGCCAACGGCCACGTCCGTCCCTGGCGCCCATCGCGGCCGATGGCGCGTGCCGCCTGCGATGTGTCACCGACAAGTCGAACCCGCCGTGTTGCGGCATCGGGCCTGCGCGTTGACCCCGTACCTGACGAGAGACCGACTGGCCGCTCTGCACTTGGAGATTCCTGCTGGCACACCGGTCTCGGTGTTGCCAAGC # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCGCCAGCCCTCCGGGACTGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.70,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 15540-14782 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGED01000278.1 Saccharothrix sp. NRRL B-16348 P442contig98.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 15539 35 100.0 38 ................................... ACCGCGTCGGTCAGCACCATCACTTACATCGCCTACGG 15466 34 97.1 38 ........-.......................... ACAGCGCCACACGCGCCCCAGGCGGTCCACGAAGAAGG 15394 35 100.0 37 ................................... GACAACGACGAAGGGCGTCCGGTCCCCGAGGAGAAGG 15322 35 100.0 38 ................................... CGGTTGCAGGTCTACGTGGGCGGGACCCTCGTGCACGG 15249 35 100.0 36 ................................... ATCCTGACGGCGCCGACGCCCGGAACTGACTACTGC 15178 35 100.0 38 ................................... TCCGAGCGCCGCACCGCCGCCCTCGCCGCCGAAGGGGC 15105 35 100.0 38 ................................... GGGAAGTACTCGCACAGGATCCGCTTCGGCCGGATCGC 15032 35 97.1 37 .................C................. TGTGACGAAGCCACCGAGATGACGGTCAACGCCTTGC 14960 35 94.3 38 ..............G..C................. AGCTCCCACGAACCGACAGCGTTGAACCGCGACGTCGC 14887 35 91.4 36 ..............G..A............A.... CGGATCACCGACGGCGCGGTGGTCGAGGAGGGCGGC 14816 34 88.6 0 ....T...T.....-.........G.......... | G [14790] ========== ====== ====== ====== =================================== ====================================== ================== 11 35 97.1 38 AGCGCCAGCCCTCCCGGGCTGGCGAGGATCGCAAC # Left flank : CTTGATGGTCGTCGGTGTCGGGGACCTCCGCCATCTCTCTCAGACACATCTGGCCGTACTCGGTCACTTTCCAGCCTCGACACTGAGCGGGTGATCACACCCTCTATCAAATCCGGTACTTGACAAGCTCCGCGTCGGTGGTGGTGCTGGGCGGTCTGTTCCCGCGGTGCTCCTACGACGTCCCGACGTCCCGACGGGCTGCGTGATCGGGCTCGGCGACGCGTGCGTGCTGTTCTCGATTGGCCCGATCACGGGCGCCTCGCCGTGCATGCGCTCTGCCCTGAAGGTCAGGAACGTGCACTACAGCTACCATCGGCGCCACACCGATGTTACCAACGTCATGGCCTCATCCAGGTGAGGTATGGGCTGGTTCGGAACCTCATGCGTGTCGTGACACGCCGGGAGGGTCCGAAGTCGATGGCGGCGTGTCGTCTCGCCTGGTGGAAGTTGATGTGTTCGTTGAGGTGGTGGGTCGTGTGTTTAGGCTGTTGATGCAGGGG # Right flank : ACCGCACTGTCGCGCACTTCCGGCGGTTCAGGGAAGCAGACAGCGCCAGCCTCCGGTCTGGTGAAGACACGGTGGGAGACTTCCGATCCTGCGGACGCGGTTGAGCTGTTCGGGCTGTGCCGCGCGAAGGCGTGAACGCCTCAGAGCGTGGTATGCGTCAACGCGTACGTTGCTCCGATCACGGCGGTGATCAGCAGAATTCCACCTGCCACGGCCGTCCGGATCAATCTCTGGGCGTTTCTCGTGCGCTTCCCGTCGGAGATTGTGTAGCCGAACCAGCCGTGCGGATGTCGTGGTGGTGACTCGAGAGGGTTGTCCTGGGTGTCGAGTTTTCTGCCCGGGCTCGTCGGGTGCGTGTCGCCAGTCCCTGTTGGGCGCGGCGATGGACGTCGGAGATCGGCCGGACGTGGCATCGGAGGCCTCCTGGGTCGGAACGGGCTCTTCTGTGTGTTTGAGAGCTGATACCTGCCGGCCGCAGAACCTAGCGGCGAGCCGCAGAC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCGCCAGCCCTCCCGGGCTGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.60,-11.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 2611-2883 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGED01000042.1 Saccharothrix sp. NRRL B-16348 P442contig136.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2611 29 96.6 32 ...G......................... CCGAGGGGCCCAAAACGGGTCTCCGGATCGAC 2672 29 96.6 32 ............................C ATCCGTGCCGAGTGGTTCCAGATCAAGTCCGA 2733 29 93.1 32 ......G.....................C ATGGTGTGGTCGGTCGTCATCATCCCGATCGT 2794 29 100.0 32 ............................. CCGTTGGGCGAGTCGTACAGGTAGTTGATGAC 2855 29 89.7 0 ...................A......G.A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCT # Left flank : CGTGGACCTCGTCGTCTGCGGCAGCATCGCGGTGAACCGGCACGGCGTACGGCTGGGCAAGGGCGCCGGCTACTCCGACATCGAGGTCGCCTTGCTCCACGAAGCCGGACTCATCCCGCCGACCACCCTGATCGCGACCACGGTGCACCAACTCCAGGTCGTCGACGACGAACTGCCCGAACGCGCCCACGACTTCAGCCTCGACCTGATCATCACCCCCGACACGGTCATCCGCTGCGACAAGCCCCGCAGACCCCACGGGCTGCTGTGGGATGAACTTCCGGCCGAGAAGATCGCCGCAATCCCGACGCTGGCGGCACGGCAAAGATCACGTCGGTAACGAAGTACGACGGGCTCGGTAGGAGCCGGCCAAGCCCGCTGCACACAGCCGGCAGTCGCCACAGGCAGCGACCGCGCCATTGCCGACCAACTGCCGCCTCCGTGCGACCAAACCGAATGAGAAACGACCATCTGGCCTGTATCGTGCCTGGTCAAGAAGT # Right flank : AACACCGGCCTTCTGCGGGAGCACCGAGCCGGGGTCCTCCACGAGCGCGAGCGATCGTTGGAGCGACATCGACGAGTGGGCACGCTGGTGTTGCCTCCGCCTTCGGGAGGTGGCCGCGGAGGTGGTTCAGCCGACCGTTCTTCCGTTCAGCCGGTATCGGCGCGTTCGGACCTCACCATCTCGACCAACCGCCGGGCGCGTCGCGCGCCGATCCGAAGACGTCCGCGCAGCGTCTCAGCCGAGATCGGACGGCGGTGCGACTCCCAGTGACGGGCGTCCTCCACCCGGGCACGGCGCAGGAGGTCATCCGCCGCATCGGACACCACGGCTCCTGCCGACGCGACGACCTCGACCACCGCATCAACCCGGCCGCCGGCCGCCGTCCCGTTCACCGCCCGCAACAGACCCGGCCCGACCTCGGCCCAGCCGATCAGCAACAGCGGCCCGACAGCGTCGAAGGCGGCCTTGCCGAACCGCCCGGCGACCAGAGGATCGGCGAC # Questionable array : NO Score: 3.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //