Array 1 14161-15776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQSB01000214.1 Leptospira weilii strain 56655 Contig214, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14161 29 100.0 32 ............................. ACAGTATTTATTTAAATGACTATGCGGTAGTT 14222 29 100.0 32 ............................. ACTACTCCAAGGCCCAAAAAAAAAGCTGCTAC 14283 29 100.0 32 ............................. AATATGTAGGTTTTTTCTATTCATAGCCTCTT 14344 29 100.0 32 ............................. AGTAATGGCGAAGGCGTTGCTTAGAATGGCGC 14405 29 100.0 32 ............................. CAAGAGCCGTCTAACGCATTTTTTTAATTAGG 14466 29 100.0 32 ............................. CGACTGGAGCGAAGCCAGTTATCAAAGACATT 14527 29 100.0 32 ............................. GAGAACTTCGTCCCCATACAGGACTTCTTCTC 14588 29 100.0 32 ............................. ACAAAATTTCGTGTGGAAATTGATAGCTGGGA 14649 29 100.0 32 ............................. CATATCAAAACAAGGATAGGATCACCAACGCT 14710 29 100.0 32 ............................. ATCTTAATGTAGCAGAAAGTGCTTATGATAAA 14771 29 100.0 32 ............................. AGGAGATTCGCTTAGGTATACTCTTGGATCTG 14832 29 100.0 32 ............................. TCAAAATGACTATAATTGACAACACTGCAACA 14893 29 100.0 32 ............................. GATATACAAATGTCAGCAACTAAAACAAAGAA 14954 29 100.0 32 ............................. CTCTAAGACAAAAAAAAGCAACATTAACTCAA 15015 29 100.0 32 ............................. AAAAACAGGTTCTACGGGAATTCTTGACTGCC 15076 29 100.0 32 ............................. ACCAGATCGGAAAAATGGGCGCATTGAAGACG 15137 29 100.0 32 ............................. GTCCGGGCGTTAAATAACTGGTTTACTCTCGA 15198 29 100.0 32 ............................. GAGATATTCTATAAAAGAAGTATTGGAGAATG 15259 29 100.0 33 ............................. TAGCTATATTGGTTTCATAATCTATTCTTGCCC 15321 29 100.0 32 ............................. ATAAGATCAAAAAATCAGAATCGAAAGTTACT 15382 29 100.0 32 ............................. GGGTCTCACGTTATCTATAGAAATGGATCCAT 15443 29 100.0 32 ............................. TCTTTTTTATTGGCAGAATTCTTTCATATTAT 15504 29 100.0 32 ............................. AAAAACAGGTTCTACGGGAATTCTTGACTGCC 15565 29 100.0 32 ............................. GAATCAACAGTAGTGAAAAACGAAATTCCGAA 15626 29 100.0 32 ............................. AGTTCTTTTGACTTCGTTTCTAAATTCTTCGA 15687 29 100.0 32 ............................. ATCGTTCGCGGGAAGTTCCTCGATTGTGTAGC 15748 29 93.1 0 ..........................T.A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.7 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GTTCAAAAACAATGCATTCTGCTCTATGCGCAGCCCTCATTTCTACTCAATGAATCTGACTTAGAAATTGCGATCGCCCTCACAAGTTTAAAATTTATAGATCGAAGGATAAACCTATTCTAAATTTTTTTATAATATTCAATTCATATAATTCCGATATACATAATATTATGGTAAATAATTCTTCCCTTTCTAAACAAATTTGTTCCCACCTCCTTCAAAATGATCGGTTCTTTTTCTTTGGATCCGAAATTCGTTTTCACGACGATTTGTTTCACGAGATAATAGATTTTGAAGGTTTATCTTTTATACCCAAGCTAAGTCCGAATCGAAACCAGAAAGAACCTTAAATGATTCCGTTCTTTCAAGGTTTCCTGAAGGGGACGGTTTTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAACACAAGACCGATCATACCTTTAAAAATAAACTCTAAGCTGACATAGTATGTAAAATACTATACGAACTTTTAGT # Right flank : AAAAATGACGAGAATAAAAACCTACCTTCGTTAGATTGAGAATTTTTACAACGTAGAAATGATGAATGTGGCTTTAAGTTTTTGATATTTCTGTTTTGGAAAAATTTCACTTTCTCAAAGTTGAAAGATAAACTTAGAAATTACGATCGGAATATAAAGAATATATCTTAAAAGTCCTTTGTTAATCCCGAAACGAAACAACACTTTTCGGAAGTCAAAAAGTTTGAAAAAGGGAACTGGTGAATCAAAGATAATGATGATTTACTAATTTATGGCGCATCGGAAATGATGAAATCGATATGCGAAATCTTATTGTCGTTTTAATTTTTATCGCAATTACCTCTTCCGGTTTATTGGCGAAAACTTCCGATTTCAAAGGCGAATGTAAACCAAAAGAATGGATCTGTATTCTTACCCGCAACGAAAATAACAAAGTAGAATTTTACGTCCAAAACCAAACACCTTCGGGAGAATATCCTTTTACAATCTATTTCAATTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13149-12267 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQSB01000075.1 Leptospira weilii strain 56655 Contig075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13148 29 100.0 32 ............................. ATTATCCGGAAGTCTTCCGAAGACCGCAGACA 13087 29 100.0 32 ............................. GAATTATTACATTGCTTCCTAAAGATTTTGAA 13026 29 100.0 32 ............................. ACATCATTTGAGCTGCCTTACGATAATCCGCA 12965 29 100.0 32 ............................. AAAGTTTCGATATGTTTGTCGAACCCTTCGGC 12904 29 100.0 32 ............................. CGCAGGCTTCTTACTGGAAAGCTGAAGAGATA 12843 29 100.0 32 ............................. ATAATTATCAAAAATAATTATTACATGGTTTT 12782 29 100.0 31 ............................. GAAGAACAGCTGAATTAAAAAATGTGAATAC 12722 29 100.0 33 ............................. GAGATGGCATTATTAAAGTTCAAACTCCTCAAC 12660 29 100.0 32 ............................. AATGAGGCAAACTATTATTTTGTTTAAAAAAT 12599 29 100.0 32 ............................. TTTCATCTCCCATATTTGATTTGTGAGTTAAA 12538 29 100.0 32 ............................. GGACATTCCGCCAAATAAACAGATTAGATATT 12477 29 100.0 32 ............................. TTATGAGAGAGTGATTTTATTTTCTCAAATTT 12416 29 100.0 32 ............................. GAGTCTGAGTAGTCTATTTTCATACGGACTAA 12355 29 100.0 31 ............................. CAAAATGCTCACGTGTGAGCATTTTGAAAAC 12295 29 79.3 0 ............T.....A....A..ATT | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.6 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : AGATATACAAGACTTTATAGAGACAGCCCATTAAATACAAACGTGATTTGCCATATTTCTCCGGAAGTGGCTTAATCATCAAAATAGAGTTGTTGAAAAATTCTATAGTTCCAATTGACAAAACCGCTTCAATCGGTCGTTTTTATAAAACAAAAACGGATGGAGTATTAATTTTTCAACAATTCTACTTATCTCCACATATTAGAGTGTCCAAAGTTCCGCGTCTAAAACGCGGGGTTTCTGCTCAAATGAACGGTACTTTATTTTATAGGGATCAGTAATATTTTTAGACAATCTGCTTAGAGGTTTTTCACACTTTCAATTGGTTTTAAAATAAGGCATCTTACTTTCACTCTTTTCAATTTCGTTTTTGGTTTATTGGGCTTGATTACGGTTACGTTTCACACGTTCTTAGTAAGAGGCGATTTGCCATCATAGATTGACTCGAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGCTTTTAGC # Right flank : TTCAGTCAAAACAAATAAGGACGAAACAGATGAGTAATAAGAATTCGGAAACGGAATCCAATTTAGAATTTTCAATGTAAAAAAACTAAAAACCAGTTTCAAAACCTGAAAATGTAGGAACTCCCACCAATTTTAAACAAGAGGGAAAACCGCACAAAAGCGGTGTAAACTCCAAGGACGTAATCTATGGGAACTCCCACATTTTTTTAAAAACTTGCCGGACACGAAAGATATTCTTTGAAGGTTTCGAGATGAACTCTAAGACAAACACAATACGGAATCAATTCAAAAAAAACCTTTTCTCAAGTTAATCCCGTATTCCAAATACGCTTTGAGACAACAACTCATGTTCATCCAACCTTGACAGTTCATATAAGAACCGTCTAACGCAGCTTGAGATACCTTCCAACCGGATTCGGTAATTTTCACAAGAGTATTGTTTTGATCCAAGGATTCGAAAATCATTTCCGTTTTGGTTTTGTACCCGCCAACAGTTAGAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //