Array 1 31793-32151 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPPC01000013.1 Campylobacter fetus subsp. venerealis strain TD contig00013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 31793 30 100.0 36 .............................. TAAATTGTTTAAATGTAATAAATTAAAAGGAGGATG 31859 30 100.0 36 .............................. AGAGCTATAGGCGAACTAGAATCAAATGGCATACTG 31925 30 96.7 36 ....A......................... AAAAGAGATTGATGGAAGTGAGGTTAAAACAGTTCT 31991 30 100.0 36 .............................. AAAAATGCATTGTAAAGAGCTTATAAGCCTTGCTTA 32057 30 100.0 35 .............................. GGTGATTTTATATAACATTTTTGTTAAGTTGGATT 32122 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 99.5 36 GTTTCAACACAAACATTGTCATTAGCAAAC # Left flank : TAGCATATCTCTCAACCCCAGTTTTATCTATATGCTTTACTACTTCATCTTTGCTAAGCGGGCTTGTATTTTTCATCTTTACTCCATCAATCTCTTCTTCATTTATCCACACCGGTACTAGCTCGGTTCTACAACGAAAATGATATGGTGGAAGCCCGAAGTTACTAGGGAGTATTTTACCCAAAAAAGGCTCATTTCTCCAAATAGCAGCTGCTTTTTTCTCGTTTATATCTTTAGCGTTTTGGATATTGTTGCTTTGAGCTTCTATATGGCTAGCAGGGATTATACGTCCGTTCATACTTCTACAGATATCACTTGTACGGCTATCTATCCTAGCTAATACTTTGTAATGCTTTACTCCGTATTTACTAGACTGATTTACTCTAGCTATGTTTTGAGCCTGACTTATAATGTGGTCGCTCACTCCTTCAAAATAGCTAGTATTTGCACTTAGTACGCCTTTAAACTTCTCTTTTAAGGTCTCTGCCATGTTTGCTCTT # Right flank : TTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAACATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 44709-44480 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPPC01000012.1 Campylobacter fetus subsp. venerealis strain TD contig00012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 44708 31 100.0 35 ............................... CAACAGGAGATAGTCTCTTGCCATCTTGCTTACAC 44642 31 100.0 35 ............................... AAAGGGTTCTAGCTTAGTTCGTAGGTCCCTTTATA 44576 31 100.0 35 ............................... GTCTTTGAAGACTTAGCTTACAATGTAGCTTACGG 44510 31 96.8 0 ..............................T | ========== ====== ====== ====== =============================== =================================== ================== 4 31 99.2 35 GTTTCAACACAAACATTGTCATTAGCAAACA # Left flank : ATTAGCAAACATGGACGGAAATGAGATTGCTAACGTTGCTCCCC # Right flank : ATAATAAACTCATCATCTAAGTAAATTTAAAAAAGCAATTAAGATAAAAAATAAATTAAAAGATATTATCTAAAACTATTAAAAATAGATTATTTGTTATATATATAATATAGCTATAAATAATGAGAATAAATTTATTTTCCAATCTAAATTAAAAAAATAACAATAATAAGTTAAATATCATAGGAACATTAAATTTAAACTATTTATCTATGTTTTTAAAAGTTTAACTAAAATTAGGTTGGAAAAAGCTTAATGCAGTATAAAATATAAATTTGTAGTTAGTGGTATATAAATATTATTATTGCTATAAATTAAAACTAACATTAAAATTGAGTTGGGTTATATACAAAACCCCTGGTGCCCAAAGTCGGACTCGAACCGACACACGGTTTCCCGTACCAGATTTTGAGTCTAGCGTGTCTACCAATTTCACCATTTAGGCTTAGAGTAATAAATAACTATAAAATAGAAGTTGGATTATACAAAAAATTATATTA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAACATTGTCATTAGCAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //