Array 1 29994-30571 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUIR01000038.1 Ruminococcus sp. AM40-10AC AM40-10AC.Scaf38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 29994 28 100.0 33 ............................ GATATATAAATAATTTTCAAGGATAATGCCGCC 30055 28 100.0 33 ............................ GATTTTTTCATTGGGTGGATTTAACCAATGAGC 30116 28 100.0 33 ............................ GACAGATAGATAAAAACCGCTTTTATGTTATGG 30177 28 100.0 33 ............................ GGGATATGCCAGCCAAATCTTCAAGTGAAATTG 30238 28 100.0 34 ............................ AATGGAAACGGCAAAAGCATCTGACCTTATGAAA 30300 28 100.0 33 ............................ ATGTCGTGCCATCTCTGTTGTTGTCATTTCGTC 30361 28 96.4 33 .....A...................... GATGATTCGGGAAATGATGGAGTATATCAGGAT 30422 28 100.0 33 ............................ GGGAAAAACCGGGTTTCGGCTGTTCATCTGTAG 30483 28 100.0 33 ............................ GATTCCGGGTTGATTTCCTGACCATACAGATAC 30544 28 96.4 0 G........................... | ========== ====== ====== ====== ============================ ================================== ================== 10 28 99.3 33 TTTCCCTCACTATATGTGAGGGTATATC # Left flank : TACGCATCAGCATTCCGGCGCCGGTATTTTTGTATGTGTCGTTATCTGAAACGATTTCCTCAACATTCGGAAATAACTGGTTGTTCATCTGAATGCCGCAGACGTTTTTGTCAATATAGATTCTTCTGACATTCGGGAAAGATTTGTTGATATTCCGCAGATAGTAGTATTTGATGCCTGTATACGGTGCTTCTCCGAGAAACTTGAATTCGGTTGCATCTGGTAAGACATCAATATCATTAACGTACATATTGTTGCCATACAGTGTGGCTCCTTCGTATAACTTTTTTGTAAACTTCATGTTTTTTATTCCTTTCTTTATGATTTTTTTGTGTTTCAAGATTAATATGCTGAAAAAAAGTAAGCAAAAAAATCCGCAAAAATAATCGGCTGCGGGATTTTTTCAGCATATTAAATATGTAACGAGGATGGCGAAAACCTTTTATGCAAATTGCACAACGAGGTATTTACGGTGGCTGGAACCCGCATAAACACTAAGT # Right flank : CAGCATATCGTTAGGCGGGTAAATTAAGTTTTTGCATACCTCGTCACAAAAAAATAAAAAAATTGCCAAAAAATAATATTTCTTAATCATTTTCCAGCATATTGATATAGAACACAAAAAAAGGAGGAAAAAATGTTTAACGTATTATATGAACCGTGGATGGGTGTGGTTGACATGAACGGAAACGAAACACTAGTTGGATTACGTGATTATCTAGTCAATGCTCATCTGTATAAATGCAGTGCAGAAAACAAACAATTTGCAGTGCTAAGGCGACTCCAGCAGCGGCTGGCTGAAACATTTGTGATGGATATTTTTGGAATCAACATTGATACTGAAGCAGCTCTGATAAATGCTGGACATTTTGATGCAGACGAGATTGATGCGTATATCAGGAATTGTGAGAATTCAGGTGTTTCATTTGACTTATTTGATGAAAATAGACCATTCATGCAGACAGACAAAATAACATATGAAAAAGTATTTAAAAATAAAGCCTC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCCTCACTATATGTGAGGGTATATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 37974-36296 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUIR01000038.1 Ruminococcus sp. AM40-10AC AM40-10AC.Scaf38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 37973 29 82.8 32 TA...T..T......C............. TGTCCGGGTCGTGATAGCTTACACGGTTTTTG 37912 29 100.0 32 ............................. CATCATCATCAATATCAGAATTCGGGTCTACA 37851 29 89.7 32 A.............A..C........... GGAGACCCGACGATTGAAATTGGGTCATTGCT 37790 29 93.1 32 ..............A..C........... TTGCCGTCCTCATCTTTTACTGTCGGTGCCAG 37729 29 100.0 32 ............................. TTCCGGCTTGCTCTGGCTCGTGTTATGGTTCA 37668 29 93.1 32 ..............A....A......... TCATCCACATATCTAATATGATGAAATTAACA 37607 29 89.7 32 T.............A....A......... AGAGCCTGCCGTTCCATCGCGCTGAACGTCTG 37546 29 93.1 32 ..............A....A......... CCCTCTTCATATGTAGCTCGTACAGGATTCGC 37485 29 93.1 32 ..............A....A......... AGAAAATTTGACCCGGCTGTCGCGTCCGGAAG 37424 29 96.6 32 T............................ ATTCCTGTAATTTATCAAGTTCAAGTTTATCT 37363 29 100.0 33 ............................. CTTTCTCTGCCTGTTCAAATGTCAGTGAATCAT 37301 29 100.0 32 ............................. GCGTCTTCAAGGCTTCATATTGCTTCGTATAG 37240 29 96.6 32 T............................ TTTCAGCCTTTAGAATCCCGGAGTATGGGGTC 37179 29 100.0 32 ............................. CGGCGTGTTCCTCATAACTGCGGGCGGCATCT 37118 29 100.0 32 ............................. TTAGGGGATGTAAAGCTGCCTGAATGCCAAGA 37057 29 96.6 32 T............................ ACAGATGGGATGATTGGGAGAATGATTTCACG 36996 29 100.0 32 ............................. AAAAAACGCATCTTGCGTCTTACTCATCTTTG 36935 29 100.0 32 ............................. GCCTTTAAAACAAATGGCAGAAAAAACTTTCA 36874 29 100.0 32 ............................. TTCTCCTCCAGTTCTTTCGCTTTTTTCAGCCT 36813 29 100.0 33 ............................. CAAAAATCCTTTTGCGGTCAAGTCATCCAGATA 36751 29 100.0 32 ............................. CCGTATAGTTGAGCCGCCCGAATCCTGCCGCC 36690 29 100.0 32 ............................. CTCAAAACGCGCTCTGAGAGGTTCTGAGCCTG 36629 29 100.0 32 ............................. AGATTCGTAACTTTCCCGGATTCGTTCAAGTT 36568 29 100.0 32 ............................. TTCCCCCTCTGATATGTGTTCAACTGTTGAAT 36507 29 100.0 32 ............................. GACAGCGTGGAGGCGTTTTTCGCCGATATGCG 36446 29 100.0 32 ............................. TTGAATTGTTATTCAATTAATTCTTGAATTCT 36385 29 100.0 32 ............................. GCCAAACCAATACAATAATCCAATTGTACAGG 36324 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 97.3 32 CGATACACCCTCACGTATAGTGAGGGAAC # Left flank : GTCTAAAAATTCCATTCATCAGACATCCAGCAACGATTCCTGCCTCTAGCATATGGTCAATTAATGATTTTTTTGGATTTAATTTTGCCCATAATTTTTCTGCTATCATTTTCGTCAACGTGTTTTCAGGTTTTACAATCAACTGTAGACCGTCGAAATCTTCGAACTCGTACGATGGATAACCGATTTTTTTTATGTTATATTTCTGTTCATTTTTATCTGTATATATTAAAACGGCCGAGATACCATCAATATTAGTAATATCCTCCCATAATCTGTCACGTGTTCTGGCTGATGCGCTAGAAACGAATGTAAACGGGGCAATCTCCTGAGAGAATAATGATAATTCACCGCGGATACTATCTGGCGCGTGTTCTAAATGTAGTACAAACATTTTTTCTACTCCTATTTTTCTTTATTTATATTTAATATGCTGAAAATAAAATATTTTTTATATGTATTGAAAAATAAAAAACAGCCGATATAAAATATCGGCTATT # Right flank : ACTCAGTGTTTATGCGGCTTTCAGCCGCCTCAAACACCTCGTTGTGCAAATTGCACAAATGTCTTTTTGGTCTCTTATCTCCATATCTAATATGCCAGAAATTGTCACTATTGGTGCAATATTTCTTGTTTTTCTAGTTTCTTTTTTTATTTGCCATAATTAATTCCAAGCTCTACGCAATCCTCAAGATTCCATAAACCAACATTAACAGGAGTTTTTGCATTGATGTCATCAAACTGGAATAATGTGGACAGATTTTTCGCAATTCTTTTCATTAGTTTTCCATTCACAAACATTTCTCTACATGCAGCACGCATATCGTCATCATTACCATGCTCTGCTGCCAACCGAAACGCAACTGGAAAGACGAGTTCTTCTTTGTATAGGTCAGCAATATCAAATACAAATGACCGGTTACCGCCATTGTGAATAAAACCAAGTCCCGGAGACATTCCAAACGCAATGATTGCGGCCTGGCAGATTCCGTATAACAGACTATT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGATACACCCTCACGTATAGTGAGGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.90,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 3 41026-42213 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUIR01000038.1 Ruminococcus sp. AM40-10AC AM40-10AC.Scaf38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41026 29 100.0 32 ............................. TCAGCGTTAAGAACAGGTCAGCGGGAACCCAT 41087 29 100.0 32 ............................. GCGCAGAGACACGCAGAGAGAGTTAAAACGAT 41148 29 100.0 32 ............................. TTCCCATTCATCTTCACGTTCTTCAAGATAAT 41209 29 100.0 32 ............................. GAAAATTTCAAGTAAGAACATTTTTCGGGTTT 41270 29 100.0 32 ............................. CCAACTGTAAAAGGCTTTTATGGGTCTTTCTA 41331 29 100.0 32 ............................. GCTATATAAACAGGTCGCTCGAGATATAAACG 41392 29 100.0 32 ............................. TCAGCTTGGCGCGTATGCCGTTTTGGACAACG 41453 29 100.0 32 ............................. TAATTGCATATACTGCAATATCTGGTCAGTTG 41514 29 100.0 32 ............................. GCTTTTATGGGTCTTTCTACACTCTTCCTGCA 41575 29 100.0 32 ............................. CCACCGAGGACATAAAAAAAGACGGTGCTACC 41636 29 100.0 32 ............................. TCAAGAACAAAACGGACTATCAAGCAACAGAT 41697 29 100.0 32 ............................. TCATACGTTTTTTGAAAAAGTTTTGATAATGC 41758 29 100.0 32 ............................. CACCCTATTTTTTAATGCCTATAAATGGTAAA 41819 29 100.0 32 ............................. CGTTAATTAAATCTTTGTTGTTTTTCTCACTG 41880 29 100.0 32 ............................. CGATTAACGATTTCACGTACCTGTGCTTCGCT 41941 29 100.0 32 ............................. ATGTACATTCACCGGGAAGAAAACCATATCAT 42002 29 100.0 32 ............................. CCCGTCCCGCGTCATTTTGTAGTGAAACCACG 42063 29 100.0 32 ............................. ACAATCTGCAACTCCGGCGGGTTTGAGTTGTT 42124 29 100.0 32 ............................. GATTTTAGAAAAATCCGTATTATATATTACAA 42185 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 100.0 32 GTTCCCTCACTGTATGTGAGGGTATATCG # Left flank : GTGTGCTCGGAAAATTGTCTGATAGATATATTAATGTACGAGAGTCCGAAGAGCCAACTGTACAGATTGCAATTCTGGATGAGGATGAAATGAAGGCGGCAAAAGAAAAAAGAAACAACAATAAGGAAAGTAATAATGAAATTGATATGATTGAGCTGTTTAAAAGAAATGTCGTAACAGTTCCAATACATTATCTAAATGATTTTGACGGTGGAGAATATGGAGCTGGAATTTTTAGGGATGTGAAAATTTTCAGCTTGAATGATGTTGTTAATCCTGATGGTGATAAAAAGATTTGTGTTGATGGCGAATATGGATTCAGGGTTTTGAATGTGTAAAGTTGGGTATACAAAATAAATTTTTTTAATATTTTTTACGATTTTTTGTCAAAGAATGAGATTTTTCAGCATATTAAATATGTGACGAGGATGACAAAAGGCTTTTGTGCAAATTGCACAACGAGGTATTTGGAGCGGCTGAAAGCCGCATAAATACTGAGT # Right flank : CGTCATTTAAATTCTTAAAACCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTCACTGTATGTGAGGGTATATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 61241-60235 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUIR01000023.1 Ruminococcus sp. AM40-10AC AM40-10AC.Scaf23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61240 29 100.0 32 ............................. CGGTGTTTGTTGGTGCCCCTATCCATGATACA 61179 29 100.0 32 ............................. AACTGGCAAGCGGAAATAGACAAACAACGATT 61118 29 100.0 32 ............................. ACGCGTTTTCGCTATTGGCGGGCGCGTCTTTT 61057 29 100.0 32 ............................. TTGCTCGTTCTGCCATTGTGAATTGTCGCTCT 60996 29 100.0 32 ............................. GTTTTTATGATATATAAGTTTGCCAGAGGCTA 60935 29 100.0 32 ............................. AATCGTACTTTCGCGGGGTTGAGGACAGACTG 60874 29 100.0 32 ............................. GAGCTGAATGAAGCTGACAGATTATTTATTTC 60813 29 96.6 32 ............................A TTTCTCCTCTCGTTTTATGTATATTGATATAT 60752 29 100.0 32 ............................. GCACATAGAGAGCAGACACCCGGGCAGGGTTA 60691 29 100.0 32 ............................. CCGGTTAGGACGTCCAGAGCAAGTCATAATGG 60630 29 100.0 32 ............................. CAAACTTTCAGCCAGATGGAAAGACAGGCTCT 60569 29 100.0 33 ............................. GCTGTCATACAGGCGATGCAGGCCGCATTTAAC 60507 29 100.0 32 ............................. AACAGTACATACACCGGGTAGAAAACCAAGAC 60446 29 100.0 32 ............................. CTCTGACCTCTTACGATTATGGTTTCAAAATC 60385 29 100.0 32 ............................. GTGCTCTGTATCAGTCATAACTCCGAGGCAGC 60324 29 96.6 32 ............................T GTTACACCTCCATCTGATAGCCGCTGCCAGGC 60263 29 82.8 0 .....A...C..C....A..T........ | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTTCCCTCATTATATGTGAGGGTATATCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTAAAGTATTATGATTTGAATGATGGATTTGACCTAAATTAGCCGTCGCATACTTGTAACTTCAGTCGTGAGTTAATTAGACGACTCATAAAAATATCGTTTACGACATTTTGTTTCTCTACGTTTCGGCGTAGAGATTTTTTTTATTTTCATTAAATTTTTTCGTAAAAAATCATCCAATTTTTAATTTTTTCGGCATGTTAAATATGCAAGAAATTTAAATACAAATTTTTACAAAAGGAGGTGTCTTGTATGGAAATTACTTCAAGTTATCAAGTAGAAATCTTATCAAATGCAGATATGAAAAGCACAGTGCAGATTTACCGCAGGGCACTTGCTTTCGTTATTGATGTATGCAATAAAGAGCTTTAGCATATTAATTATGTGGATGAGAGATTAGAAAGACATTTGTGCAATTTGCACAACGAGGTGTTTGAGGCGGCTGAAAGCCGCATAAATACTGAGT # Right flank : AAATCGGCAATGGCATCCTTCAGGCATCAAAAAATATAAATGTAGTTGACGATAGTATCCCGCAAATTGCCTAAAAGGAGGTGAGAAAAATGAGTGGAGACACCGAATTCTGAAACACAACAACGCCACATACACAATACACAACATTTACAGCCTGGCAATTCTTTTGCCGGGCTTATTTTTACGTTTTTCGCTATTTCAAAAATCCCGCATATTAAAATCGTAAAAATATATTTAAAACTAAAACAAAGAAAAGGAGACTTAAAAAATGAGTAAAAGCAAATGGATTTACAAAAATCTTAAGAATCCGGAGTTTCAGACTCTCGCAGAGCAGTTTAATGTCCACCCAGCAATTATCAAAATTCTCGCAGATAGAGGAATTCAGGGTGAAGAGGCAGTGAGAGAGTACCTGGAGGCTGACATTTCCCGCGTTTCTGACGGCTCAGAGCTGACAGATATGCAGCGCGGCGTTGATATTGTCTACGACGCAGTAAAAGCAG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTCATTATATGTGAGGGTATATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 64933-63867 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUIR01000023.1 Ruminococcus sp. AM40-10AC AM40-10AC.Scaf23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64932 29 100.0 32 ............................. TTAGACAATTTTTATCTTTCGACATACTCCGC 64871 29 100.0 32 ............................. GAGGTGGACAGAATGAGAATGACAATTCACAA 64810 29 96.6 32 ............................T AGCAGGATGACCGCGATACTCCCATAGCACGA 64749 29 100.0 32 ............................. ATGAGGACAATTAAAGAGTCATATTTTCGCGG 64688 29 100.0 32 ............................. CAACCCAAGGAGCGAAGCGAAACAGGACTAAC 64627 29 100.0 32 ............................. TACAGGCGTAACCCTCGCAGTTGTCCAGAAGA 64566 29 100.0 32 ............................. CATGACGAGGACGAGGAAACGGACGGCGTTTG 64505 29 100.0 32 ............................. CCGCATTTTCATCTCATAATCAAAGCAAGGAA 64444 29 96.6 32 ....A........................ ACCCTTGACGGTTCGTCAGTGATGAGTGCACC 64383 29 96.6 32 ............................A CTTTTTTGAAACCAAAAAAGCGCGGGCGCCCG 64322 29 100.0 32 ............................. GCTTCATTTGCCTACGGGGGAAAATGAAGCCC 64261 29 96.6 32 ............................A TTGAGTTTAAGGGAGACAAGTTTAGTATCATT 64200 29 100.0 32 ............................. CAGAGAACAACGCCGCGACATGCGGCAGGTCA 64139 29 100.0 32 ............................. TATCATGGCCTCCGGGGCTTACAGAGACTCCG 64078 29 100.0 32 ............................. CACTGAAAACGAGGTTCTTCTTTTGTGAGATG 64017 29 96.6 32 .....T....................... TAATTTTCGCTGCAGAGTGTCTGTTTCAGTTT 63956 29 100.0 32 ............................. AAAAGAAATGCAAAAAAAGACGCAAAAATTGC 63895 29 89.7 0 .........T....T............T. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.5 32 GTTCCCTCACTATACGTGAGGGTATATCG # Left flank : ATTCTTTTGAGAATTCTTTTTGATAGTTTTTTGTATTCATTTTCTTCTCCTTTATGTATTTTTCTTTAATTTCGTGGTTCTTCTTTGTTTTAACATGCAGGATTTTTAGAAAAAAAATAAAAAAAATGCCAAAAAACAATATCCCTTAATCATTTTTCAGCATATTGATATAGAGCACAAAAAAAGTAGGAAAAAATTATAATAAAGGAGAGTAGTTTAATGAGTGAGATAAATAAGTTATTGTGGTTTCTTTTAACACTATCTATTAATGGTCTGATATCTATTATTATCAGTCAGATAGATTCTAAGCGTACTTTAGAGATTTTATTTGCTGTTTTCTCAGTCATAATCTGTTTAGTATGCACTTGTTGGGTTTTCTTTGACTTCTGGAAGTAAAGTAACTAGGGTAAGGAAATATGTGGATGAGAGATTAGAAAGACATTTGTGCAATTTGCACAACGAGGTGTTTGAGGCGGCTGAAAGCCGCATAAATACTGAGT # Right flank : GTCATTTTCGCTTCTTCCAGAATCCCGCATATTAAAAATGTAAAAATATTTCAAAAAATACACACAAAGAAAGGAAACCAAAAATATGAGTAATATATCTTTTCAGGATGGAGTAGTTTTCTACGAATGTTCAGCCAATGAGCTGATTGACGTTGAAATTGAAGATTACGTTGACGAGTTAGTTTTCGGAGAAAAAATTCCTTGCACTGTATATAACCTTCTCAACGTAAGCAAATCATTCCCGCAGATTAGAACAATCGTAATTGAAGAAGGAGTTGACAAAATCCAAATCTGGAATAGAACATTTCCAAATGTTAAGAAAGTGATATCTTACAACAAGAAATTTCTGTCCGGAAACGTTCTTAAAGGGCTCGGAAATTCTACCGGAAACGAAATTATCCTCTTTAATTCATTTGTTAAGAACGAATGTGAGGCGATTGATTTAAGCGAAGTTTCATGTATTGAAAGCCACGCTTTTGAAGATTGCAAATCCGGAAATA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTCACTATACGTGAGGGTATATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 67637-66144 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUIR01000023.1 Ruminococcus sp. AM40-10AC AM40-10AC.Scaf23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67636 29 100.0 32 ............................. TCCCTTGTTTTCAGCCCGCATCTGCGCGCAAA 67575 29 96.6 32 ............................A CACGCACGGAAGCGCACCCAGAGGGCGCAGGA 67514 29 100.0 32 ............................. CGTCCAGTTCCATTCCTGAAACACCAGCCCGT 67453 29 100.0 32 ............................. TTTGCCAGAGGCTAGGCATTCTGGATTTAAGA 67392 29 96.6 32 ............................A CATTTGTGGACATTTTGGGAAAACTGTGGTAA 67331 29 100.0 32 ............................. TTTGCACTCAACACACCTGAAAAAATACCAAG 67270 29 100.0 32 ............................. GTGCATTCATGTGCTGATATACATTCATATCG 67209 29 100.0 32 ............................. TGTCGCGTGATAAAATTCTTTGTCTAGCTCAC 67148 29 100.0 32 ............................. CGAATTGTACAGCCAACAGTATTACCAGATGG 67087 29 100.0 32 ............................. CGAATTGTACAGCCAACAGTATTACCAGATGG 67026 29 100.0 32 ............................. CGAATTGTACAGCCAACAGTATTACCAGATGG 66965 29 100.0 32 ............................. TTTTTGATTTGATGGAACGACTACAAGACCAA 66904 29 100.0 32 ............................. CAGGTCGGCAGGGGCTACGGACTGGAAAGGGG 66843 29 100.0 32 ............................. AAAAAAGAAAGCGGCCGAATTGTTTGAATTGC 66782 29 100.0 32 ............................. GCCGAGTTACACAGCCGCGGCGCTTGGCGGGT 66721 29 100.0 32 ............................. CCCGGCAAGATGTGCATATATATACCGACACA 66660 29 96.6 32 .......................G..... TGGGACAGCAGAACCGGCTTGCAGAGATTGAC 66599 29 89.7 32 .....A..............A.......A TTCTTTGTTGATTAAAAAGCCTGCAGAGCCGT 66538 29 100.0 32 ............................. TAATTTTCGCTGCAGAGTGTCTGTTTCAGCTT 66477 29 96.6 32 .......T..................... AACACAGAGATTGCAACCCTGGAATCATACAA 66416 29 96.6 32 .......................G..... GGCGGCAGCAGTTACGGCCTGACCGAGCTGCA 66355 29 89.7 32 .........T.A...........G..... CCCTCTTTGTCTGCATATAGCCATGCTTTTCG 66294 29 89.7 32 .........T..........A..G..... ATTTTATTGACGCTGTGGCGAAACTATGACAG 66233 29 82.8 32 ....A....T.....A...T...G..... GCAATCAATCAAGAAAGGAAACTTCGCAGCTT 66172 29 72.4 0 .........T.A.........C.GC.CTT | ========== ====== ====== ====== ============================= ================================ ================== 25 29 96.3 32 GTTCCCTCACTGTATGTGAGGGTATATCG # Left flank : CGAGGGAGACAAACACTTTTCAGA # Right flank : TGTTAATAATTATCTTTTCTGTTTAACTTTGTCTTAGATTTTCTACGATTTCTGTTAGGTTTTCGCTGTTTAATATGCCGGGATTTTCTGTCTCAAATTGAATCAGCAGACGGCAGTTTTCAGCCTCCGTTTCGGTTTGTTGCCGGTATAGATTACGCAGTTCTTGGATGTTTAAATTGACGGCGTTCTCTATTAATTTTCTTGATATTTCAGGCATTGTGTCGTATCCCTGCCCTCCGTATAGCTTCTCGCATGCATCCCGGATTTCGGTAATATTAATCGGATTTTCTCTATTTTTGTTCTCCTCGATAAGTATTCCAATGATGTCAGATAAGTCGTGCTTGTATATTCGGCCTGACCTCATTTTCATTGCAATCAAGAATGCTCCTGTTATCGTTCTAACCTCAACAACATTATAAAATGTCCGGTAATGCTTGGAGTATAGCCGCAGCATCGGTGAAAAAGACGCCGTTTTTGTAAAGTCGCTGTTAATCCAATCA # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTCACTGTATGTGAGGGTATATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 23471-22838 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUIR01000012.1 Ruminococcus sp. AM40-10AC AM40-10AC.Scaf12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 23470 32 100.0 36 ................................ CATTTGAACAAATTTTATATGAACGTGTGGAACGTT 23402 32 100.0 34 ................................ ACACGTGTGAACTATAGTTAATATGAGGAGTCTG 23336 32 100.0 34 ................................ GTGTCAAATATTTTATAGCTGTCGTAAAGTTTAT 23270 32 100.0 37 ................................ TCCGGTGCAAATGTCAGGGTAACAAACCAGTCCCATT 23201 32 100.0 33 ................................ AATGTTATTGGGATGGTTAGTATATCAGGAAAG 23136 32 100.0 34 ................................ CTTGTGAAAAGGTTTCCTAAAGTCGGGCAATATA 23070 32 100.0 33 ................................ CTTGATGAATTAGAACCAAACAGGGGAAACATA 23005 32 100.0 36 ................................ TGAATAAGATCCCTGTCCAAACACTGCAATAACTGT 22937 32 96.9 36 ...G............................ ATCATGCACCATGAAACGAACGCAGCACACCATGGC 22869 32 96.9 0 ...........................A.... | ========== ====== ====== ====== ================================ ===================================== ================== 10 32 99.4 35 GTCACTCCCCTTGCGGGAGTGTGGATTGAAAT # Left flank : AAAAGATGCTTGTTCTGATAACCTATGATGTGAATACAGAAACGGCAGCCGGAAAAGCAAGATTACGGAAAGTAGCAAAACAATGTGTTAATTATGGAAGACGTGTCCAGAATTCAGTTTTTGAATGCATCTTGGATAGTGCACAATGCGTTACCCTTAAGGCTGCTTTGGCGAATATTATTGATGAAAAGACAGATAGTTTAAGATTTTATTATCTGGGAAATAATTATAAATCTAAAATAGAGCACATGGGAATAGAAAGAGGAATATCAGCAGATGATATGCTGATATTATGATGAAAAAAGCTTGTGAAATTAATTAGGAGATGTGCGAATGATAAGAACACATAAATTTCCTAGAAGACTCGCACTAGAAAAAAATAATTGTTATCTGATAAATGGTAGCATATAATTATTTGTGTCAGTAATTACAGGTGATTTTGAAATATTGCTTTGGCTAATAATAACAAAATTCAAATGTGATTATTAGCAAAAATTGCT # Right flank : TTGAGGAGATGATAAATTGTTTCAAAATTATGGGACGTCTATGGAGATGTTATTTAAAGGGATTTTGATGTTGGCAGTCTGTTCGGGGTGTTATCTGGTTTGGTGGGGTGTGGCTTTTTATCCGGAGAGGCATGCACCACTGTGGCTGTCGGGAATTTTGTTGGCAGGGACGGCGGTTTGCGGGATCATGGCGGTGAATTGGATGGCGCAGGGGATTTTTCAGGCTGAGAAGGTGCGTGCAGGAATTCCTGGTGGATGGATTCTGGCTGGTGGTGTGATTGGTTATGTTGTTTTGTTGGTAATCAGTAATATTATTTTTCATCGTATGGTGACGACGGAGTTGTTTCTGATTATCGGATGGGCGGTTTTGAATCTAATCACAGTTGATACGCTGTATGCCAGTGGATTGTTTTCAGCTGGAGTTTCTGTTGCATTTGTGGTGTTGACCTTGGTTGTGGTTGTGGCGAGTTTGTATTGTTATATGATTTATTATGAGCTGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCTTGCGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : NA // Array 1 34020-33544 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUIR01000043.1 Ruminococcus sp. AM40-10AC AM40-10AC.Scaf43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 34019 37 100.0 36 ..................................... ACGAATTTCATATTCGGCAAAGAACTCTTTAGTTCA 33946 37 100.0 37 ..................................... GTTTAATGGTACTACATCTTCTGGCTTTGTTGGCACT 33872 37 100.0 35 ..................................... GTTTCAATTCCATATTCAGATAAGGTTTTGTTTTC 33800 37 100.0 37 ..................................... ATTTACAAACTTTCTCGTGAAGCTGTTCAAGAGTAAC 33726 37 100.0 35 ..................................... TCTCAATTTCCTGATTAAGGGCAATGCTATCATTC 33654 37 100.0 37 ..................................... AATAAGCCAACACTTATTAAATCTTCCTCATCATATT 33580 37 73.0 0 ..........................AACAAG.CTTG | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 96.1 36 GTAGAAATGAAAAGAACCCAACATAGTGGGTAATAAC # Left flank : GTTCCCGAATGTGTTCGGACTGCATTTTCAGATACTTGTCGTTGTCAAATCCTATCTTCATTTGTTCATTTCCTTTCCCATCACATAATTAGTCACTTATTATTACTGCTCGTGGTTGGTATCCCGCGAGGTGCTTTGGCATATTATGCCAAAATCCCGAGACATACAGCGCGAATTTATGCGGTTAGCATAAATTCTGTGTATCGCGAAGCGTATTACTGAGAACGAAGTGAGCAGTAATCACTTTGTTAATAGTATACTACAAAGAGAGCAATTTGTAACAGGTAAATTTGTAAAAGTGAAAAAAATTTATTATGGAATTACACATGGGGAGAATGATAAAAAACTAAAAATAGATTGACGGATAAGAGGAATCTGGTGTAAAATTTTGACAAGCACAAAAAAGTGGTTGAAAAACTCTTTTTTCAGAATATTCAGATAAATACTTACAAAAATGCCCTTGGAAAGCCTTGATTTTACTGGGCTTCTGAAGGGGTACC # Right flank : TTTTTCAGAGCTGTCAGTAGCAATGAAAGAAATTTAAGACAATAATGAAATATAAATTAGAAGAAACATGTTTTCCCAAATGAAAAGCCAGCACAAAATGTGCCGGCTTTTTTTCTGCAAATTGTGTTCTCGATAATATAGAGAAAAGAGTTATTATAGTATTAGAAGAAATAATTTCTTCCAGCTTCGGAATGACAGATTTGTTTTCAGTGCAATGATAATATACGAATATCCTCTGAAAGAAATAGAAAATGATTGACTGAATATTTGTGCCTATTGTAAAATAAAAACAATATGAAAGAAACAATGGAAAAATAAACGAAACATTAAGAAAAAATCATGTAAAAATACAGTAATAATTGAAAAGTTAGGCAAATGCTTCAGTTAAGAACAAACAAAGATACTTACCAAAGGGAAAGGGGCGTATTAAATTGCAGAGGAATCTGGAAATGAAATTGCCTGATACAGATGAGCAGTATGACTGGAATGAAATATATAGC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGAAAAGAACCCAACATAGTGGGTAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 5196-4698 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUIR01000041.1 Ruminococcus sp. AM40-10AC AM40-10AC.Scaf41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5195 36 100.0 29 .................................... TACTGACAGGAGAGTGAGGCAAGATAGGA 5130 36 100.0 29 .................................... CAGGACGAGGCGTATACGAAACTAAAGTC 5065 36 100.0 30 .................................... ATGACATACAAGCTGATTGATATGTACAAA 4999 36 97.2 30 .........T.......................... GAAGAGATGCTATATTCTGGCAAAACATAT 4933 36 97.2 30 .........T.......................... CTACCTGGTATGTGACAGTGTCACCAACCA 4867 36 100.0 30 .................................... AACGGCATCAGAATTAAATCCATATGTTGT 4801 36 97.2 30 .........T.......................... CATACGTGCGATAAATGTTGTCATATCTTT 4735 36 88.9 0 .....................A...A.A...T.... | G,A [4701,4705] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.6 30 GTTTGAGAGCAGTGCAAATTCGTAGGGGAATCAAAC # Left flank : CCAAAATGACGACAAGAATGCAGAATGTTGCGGTAGATGAGAGTCATTATCTGGAAACAAAGGAAATGATTGGAAAATGGGAGCAATACCTCATGAAATTATCATTGGATCTGGTTGGAGCTTTTGAATTTTCAAAAATATCAATTGAGACATTGATTAAAGCTGCGGGAATTCGTGTAGACGATGATTATGACAACCTGGGAGAACAACTGTTGGATTATTTTGAATTAGTTCAGGAATATGATGGAAAGAAATTATTCATTCTGGTAAATTTGCGGAGTTATCTTTCTGATGCAGAGATGAATTTATTTCTGCAGAATATAATAGAAAGAGATATACAGATGCTGATACTGGAAAGTAGCGAACATCCAATTCTTGAATGTGAATGCAGACATATTGTGGATGCAGATTTCTGCATTTTGTGTTAGTATAGGGGTGAGTAAATACAACTTGCGAAATTGCACAAGTGATTCGCAGATCATTTATTTCAAACATTTGAG # Right flank : AGTAGTTTATCTAAATTAAATGATTTTATAGAAAGAAAGCAGGTGAAACGCAATGAACGTTATATGTTTCCACAACCCGGATGAAGAAAATGGCTATTTGAGCAACTGGTATCTTAGTCATTTCACAGTCAATGGAATAGATTTTTCGTCAATGGAGCAGTTTATGATGTATCAGAAGGCATGTCGCTTTCATGATGAAAAAATAGCTAATGACATACTTCATACAGATAATGTTGCAGAGATTAAGAAATTAGGCCGTAAAGTACATGCCTATGATGAAAATGTCTGGAATGGTGTAAGGCAGCTTATTGTTTATGAGGGATTAAAAGCGAAATTCAGTCAAAACGCAGAATTGAAACAAAAACTTGTTGATACAGGTGATGCTGTGTTAGCTGAATGCGCAGTAAGAGATCAGATTTGGGGAATTGGTTTATCCATGAGAGATCCAAACAGGTTTGAGCGAAGCAAATGGAGAGGCAACAATCTTCTGGGATATGCTT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGCAGTGCAAATTCGTAGGGGAATCAAAC # Alternate repeat : GTTTGAGAGTAGTGCAAATTCGTAGGGGAATCAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 24495-25177 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUIR01000046.1 Ruminococcus sp. AM40-10AC AM40-10AC.Scaf46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 24495 30 96.7 34 C............................. GAGTGATAAAACGTATCACCCGAGACAATTCCTA 24559 30 100.0 37 .............................. GAAATTTTCTTCTTTATTCTTTTGTTAATTCGGTCTA 24626 30 100.0 34 .............................. AAGGAAGTTTTAATATTGAAACAATTGAATTTTG 24690 30 100.0 36 .............................. GTGATGTAGCATTATTCTACAACATTAGTCAGGACT 24756 30 100.0 35 .............................. TTCAAACAGATGCACAGAAATGTGACTGGTGTTGT 24821 30 100.0 35 .............................. GATGCCCTTGTGGGAAAAGTTGATAATGATGTGAA 24886 30 100.0 35 .............................. ACTCCGTATACCTTTTCCTCGTTGCCGATCATCTT 24951 30 100.0 36 .............................. ATGCTTTTGCAAAGCCACCTTCGTAGACTTAGAAAA 25017 30 100.0 35 .............................. TGGATATATTTTACTAAGACATCATTTTTGTAAAA 25082 30 100.0 36 .............................. TGTTCAGAACAAAAATTTTAAAATCTGCTTACCTGT 25148 30 96.7 0 ...............G.............. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 99.4 35 ATTTACATTCCAATATGGTTCTACTTTAAT # Left flank : GGTCATGGTATGTCCCTGCACGCCATCTGCACCATTTATCACAAGAATCGCATAATCCAGAACCTGCAGTGTTCTCTCCATCTCCGCCGAGAAATCCACATGCCCCGGCGTATCCAGTAAAGTTATCCCCCTGTTTCCCAGTTCAAACTCCGCCTGCTTGGAAAAAATCGTGATTCCGCGCTCCCGCTCCAGGTTATAAGTGTCCAGATACGCATCCTTATGATCCACACGCCCCAGCTTACGGATTTTTCCCGTTAAATATAAAATCCCCTCCGACAACGTAGTCTTACCTGCATCTACGTGGGCAAGGATACCAATGACAAGTTTCTCCATAGTATATTTAAAAACTCCTTTTTCTTTATGAATTGATGTATGCATATTGGCTTAAATAAAATTAATCGTTTGTATCAATTAAAGAACTATTTTAACATAAGAATCTATATAATTCCAATTTCTACTTTAATATATTTTGTCAGATATGTAGCCTTGCTTGTGATTTT # Right flank : TCCATAGCTGTCAGTTCCGCATATTTTTTATGCATATTTGCTCATTTTTGTCGACTTCACTATATCTGTTCTATTTTCCCATTCATTTTATCATGTTTTTCATCAAAAAACCACTCATTCCCTTTATTTACATACCATTGTCGACCTCTTCGCATTTTTATTTTATCGAACATCGACAGAATTTTTCATTATTAATCTACATCATCTACAAATTCAATTTTATAATATCCCATTTCATCATATCGACATTGCATAACTTTAATTTTTTCGCCTGGACTCAGATTAATTGATTGATATTGATGCACACATCCTTTTTTCATAGCCTTTTCATAAGAGTTCCAGTGATAATATGGAATTTCAAGCGAATACTGCAAAATATTACTTCTTAAACATTTTCTTTCAATCGCAGTTAATCGTTCTGAATTTAATTTCTGAGATATAGTATCTATTTCTTCTTTATATTTTTCATATACTGTTTCAGGAATGATCGTCTCACTTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCAATATGGTTCTACTTTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //