Array 1 63225-62783 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEE010000016.1 Pseudoalteromonas sp. MMG013 assembly_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 63224 35 100.0 32 ................................... ACAGTTACCTCTTACTTAAAAGTAATACCAAA 63157 35 100.0 33 ................................... GTTAGCAAAAGCCGTTAAAGCGCGGTTAATAAT 63089 35 100.0 32 ................................... TCTCTCTCAAAATGAGAGACTTTACGCTGTGC 63022 35 100.0 34 ................................... TTAAAAATATTCATACTATAAAACCCTATTTTGA 62953 35 100.0 33 ................................... CTGAATCAAAAAGCGCATACCCAATAAGAATTA 62885 35 100.0 33 ................................... TTGATACTCATAATGAGTACCTCCGTTATGTGT 62817 35 97.1 0 ................................G.. | ========== ====== ====== ====== =================================== ================================== ================== 7 35 99.6 33 GTATGAGTGACCCCGACTTTAGAGGGGATTGATAC # Left flank : CGATAAAGCGCATGATCTAAGTGGCTTAGTTGGTCAAATACAGTACCAAACCACATCGCAATCACTGTTATGGCTACAAATTGGCAGCGCATTGCAAATAGGTAAAAAAGCCAATTTTGGTCAGGGCAATTACTCCCTAGAATATGCCTTAATGTCGGCTCATGATGACTCAGTACAGTAAGTTATGTAAATAGGTTAATGCCCGAAAATAAACGCTTTAATCTATTTTGACCACATACTGCTTTTTTACTTAGGTTACTTTGACTGAAAAGGTTATAGCCTTTTAATTTAATTAGCTTTTTTCAAAAAATATTATTTAATCTACACTATAAAATCAACACTTTGTCAGTAGCCTAGACCACAGATGTTTGAAAACTTTAAACTTTTTCCTTTCCAACACTTAAAAATGTCAGTAACAAACAGCTTTTAGGTACAAGCTTTTGGAGAGCGTCATTTTTACCCCTTCTAGGCCTTGTATGGCGCGGCCTCGATCAGCTATA # Right flank : TGGCTCTCCTAAGAACTTTGTATTGTGGTTCAATAATTCCGGACACTATTTTAGGTGGTATCATTACCACTCAATCAGAGGTGTCCGATGGTAAGAAAACGCAGAACATTTAGTAAAGAATTCAAACTTGAAGCCGCTTGTTTAGTTTTAGACCAAGGCTATTCACTTCAAGAAGCATGTCGTTCATTGGATGTTGGAGAAACGGCTTTAAGGCGCTGGGTTCAACAACTTGAACTTGAGCGAAATGGTGAAACACCTAATGCCAAAGCTTTGAAGAAGGATATTAAACTATTTAACTCCTAATGATATGATTAAAAACCATGTTGCACTGACCACTTGATATCACCACTCCTTACTTTTCGCGAAAAATCGCTTCACACCACTGAGAGTTTCTTACTTAAGACTCGATGAAAAAAAACTAATCAATTGAATTTAAAAGAAAATTTTAAATTAGAATAATTATAGACAAAAAAGATATATAAATTAGGTAAGATTATTTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATGAGTGACCCCGACTTTAGAGGGGATTGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 78145-78725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEE010000016.1 Pseudoalteromonas sp. MMG013 assembly_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================== ================== 78145 35 100.0 34 ................................... CATTGGACATAAGTCCTCCTAGTATAAAAAAGAT 78214 35 100.0 31 ................................... CTTGTCATGTTCCACCATATGGAACTCCTCA 78280 35 97.1 31 .........................C......... TTGCCCAGCTAATTGACCCATGAAATTTTAC 78346 35 100.0 33 ................................... TCCTAGTAGGTAGTGGTAGTAATGGAAATGTTA 78414 35 100.0 35 ................................... TTGATCTTGCGTGTATTTCATATCTATCTCCTATT 78484 35 100.0 33 ................................... CCATAGGGCGGGCAGATTGTCCAAATTGTAGTT 78552 35 100.0 35 ................................... AAACGTTAACCATAAAGATTCCTTAATAAAAAAGA 78622 35 100.0 34 ................................... ATAGATAATAAAACGGTGTAAAAGATTTAAATTT 78691 35 91.4 0 ................GA...A............. | ========== ====== ====== ====== =================================== =================================== ================== 9 35 98.7 33 GTACGAGTGACCCCGACTTTAGAGGGGATTGAGAC # Left flank : GCTAAATCAAATTCACCAAAAGCTAAAAAAGTTACTCAAACGACAAGATAAAGCACATTTATTTCCATTGTGTGGTAAATGTATGGGATCAAGAAAAGCCGATGGCGCAGGTGAAGTGACTTGGCCTGAGCATTTTTATTACTACTAACTCCTTAAAGTTTTTATCAGCAACCTTTTATCAGTAATCATAGTAAAAAATCGATTATTAAGCATGCCAGCTAATTTCATTACCCTACTTACCAAAACTACCATTTTATCATTTATAGAAATACCCTAACTCACTGTTATTAGGCAATAAAAAATAAAAATCTAATTATTATGTTGTAGGCAAAAACATCACTTTGTCAGTAGCTAGGACCGCAGATGATTGTATTTAATAGGGTTTATTAGGTTTTAGAGATCTAACTTGTCAGTAGCAACTTATTTTTGGGTACGATTTTTTAGAGACCGTCATTTTTACCCCCTCCAGCCCTTGTATAGCGCGGCCTCGATCGGCTATA # Right flank : CCGTGGGGCAAAACAGTCTTCAACCTGTTTGTTGTGGTTCAACAAAGTTCAGGCAAAGGTTATGGCGTTATCAAATAACACAAAGCATGAGCCGCAGAGGTAATTGTTGGGATAATGCCCCGATGGAGCGCATATTCAGAAGCCTCAAAACAGAATGGGTTCCAAGTACGGGCTACAACTCATTTAAAGAAGCAGAGCAAGATATTAGCTTTTATTTGATGAACTATTACAACTGGAGCAGGCTGCATAGTCATAATGATATGAACGCCCCAGCAGTAGCAGAAGAAAAACTTAATTCACTGTCCGGAATTAGTTGACCACAACACCACTCAGGATAAAGGATCCAGATGAGTGGGGTTTTGTATTTTTTATTTATAGTATATGGGTTCGTTATACTTGATTTTAAGGAGAGGAAATAAGGTGTTTAAAATAGAAAGTGAGCGGTTACTAATGAAGCATTTCTCATTCAATGATGCTGACTTTATCATTGAGCTATTGAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGAGTGACCCCGACTTTAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 197-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEE010000051.1 Pseudoalteromonas sp. MMG013 assembly_contig_51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 196 28 100.0 32 ............................ TTGAGCCCGCCCATTTACATAGAGACTAGATC 136 28 100.0 32 ............................ AAGCCATAAGCTTAATCTCTTTACCCATAGCA 76 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGTTTGTGTATCTCGTTTGTAACTTATAGGTTAATTTTATGTGTATCAAGTTGTTTGTTTTTTGTTCTCTTAATAGATGTGTGTATTAGCGTTATTGTTAGAAGAAAACACATTTATTGTCAGGCAATGTACAACGTTAACCGTTGTTTTCGCTGGTAGAGTAGGTGGGTACTCACATACCCCAAATGAATTGAACCTGATATCATTCGATGAAAGCGTATTTCTTTTAAAAGTAACCGTACCTATAAGGTGATATTTGAGTACCGATTTAGGCGAGGTTTTAGTTATAAATTAAGGTAATAGCGCCTTGAATCTTGAAATAAATTCATGAAGATGAATAGATATGAGCTGTGATTAGTTACTCTAAAGCCCTTTATTTTTCGCTCTTTAAAAAGTAACTATAAAACAGTAAGTTACAATTGGTCGTTTTTTATATGGTTAAAATGGTATTTTAGCGGTAACGACTTGTTGTAACTTATTTTTATGATGATAGTCTATT # Right flank : AGCAAATTAGCACAGGTGCGCCCACTGAATATAGTTCACTGCCGCACAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3452-2099 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEE010000051.1 Pseudoalteromonas sp. MMG013 assembly_contig_51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================================================== ================== 3451 28 100.0 32 ............................ TTTATAGCGTTGGCGCGATCTTTATAAAACGC 3391 28 100.0 32 ............................ TCCACAGGGGGATAACGAGACTGGGGACGTTA 3331 28 100.0 32 ............................ TCATGGCACCAACCACCATTTCGGCGCCAGTG 3271 28 100.0 32 ............................ GAACAAAGGGAAATTATCTAATCCGCCGTGAC 3211 28 100.0 32 ............................ TTTTTTGGCGGTGTTCAAACGCGCTTGGCCAA 3151 28 100.0 32 ............................ AAGCGCGCCAATTAGCAGGTTTGCCTATTTGT 3091 28 100.0 32 ............................ GTCAGCGGCCTTAGTTCCGTCAGGGCCGTTAG 3031 28 100.0 32 ............................ ATTAAGGAATCATACCTCTCCACTATGGCCTC 2971 28 100.0 32 ............................ TGATCGAATATATCCACAAGTCTAAGATATTC 2911 28 100.0 32 ............................ TTGCGTGTATACTTTGATTTGAGTAAATCCAC 2851 28 100.0 32 ............................ ATTTCTTTATCTGAGCTAAGATAATATGTGTT 2791 28 100.0 32 ............................ TGTGATTCATACATATTATTTTGAGCAAAAGA 2731 28 100.0 32 ............................ CGATGAACTTAAGAGAAGATCATCGTGTTGAT 2671 28 100.0 32 ............................ ATCATCATCACCATCATCACCATCGTCACCAT 2611 28 100.0 32 ............................ TATTCGCCAGAGTTCCCCAAGTCACTGCAAGG 2551 28 85.7 32 C.........A.G.....T......... GCCATGGGCGCTAGCCCATCGAAGCGGATTTC 2491 28 89.3 33 C.........A.G............... AATTCACGCCAACGCAATGCAGCCTTTTTAACC 2430 28 89.3 33 C.........A.G............... AATTCACGCCAGCGCAATGCAGCCTTTTTAACC 2369 28 85.7 32 C..T......A.G............... AAGCACTAAACCCAATTCGATTTCTTCTTTCC 2309 28 89.3 32 C.........A.G............... ACTGCCACACTCACCAAATAACGCCACCATAC 2249 28 85.7 95 ................A........GTC ATGGATGACCGATGTGACCCAGCTCCATGGATGGATTTGGCAACTTCATGGACCCTGAAACCAGTTCAGGGCGACGAAAGTGGGTGAACCGGTAT 2126 28 78.6 0 A.G....................T.GTG | ========== ====== ====== ====== ============================ =============================================================================================== ================== 22 28 95.6 35 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CATGGACCCTGAAACCAGTTCAGGGCGACGAAGGTGGGGGAAAGGCGACGAAGTTGGGTGATTCGATCACAGGCAGCTTAGAAATATGCACGCCCCGCTTAAGCCGATAGTCCAATTCTTCACTGCCGCACAGGCAGCTTAGGTGATGAGTGACCGAAACGTAGTTTCGCAGCACGAAGAAGTGAGGTCATCCGGATGACCGATGTGACCCAGCTCCATGGATGGATTGTTTACACTTAAGTGACAACTTCATGGACCCTGAAACCAGTTCAGGGCGACGAAGGTGGGTTATGTTCGTGCACTGTAGCAAAGGTAGTTTGATGTGTTTGGGTAAGTTGCAGTTCGTTAGGGGGAAAATACCCTTTAAAAACCTTTTATTTTTCGCCCTTTAAAAAGTAATTATAAAACAGTAAGTTACAGTTGGTCGTTTTTTATATGGTTAAAATGGTATTTTGGCCGTAACGACTTGTTGTAACTTATTTTTATGATGATATTCTATT # Right flank : ATGAGTGGCCGAAACGCTTTCGTTTGATAGGTGGCGCAACACTTCGATGTGAGGTCATACACACCTCGTCTTCCTGACGCAGGTCAGGCTCCACAATACCGAATATGTTTCAACGTGGACCCTGAAACCAGTTCAGGGCGACGAAGGTGGCGGAAAGGCGACGAAGTTGGGGAAGGGCGATGAAGTTGGGGAAGGGCGATGAAGCGGTTGAGTCGGCGTGTTTATTACGCATTTAAAGAGGGTGACCCACAGCTATGCACATCACCTCGGTTAAGCGTCTGATGAAAAGTCAGTGAAGTAGGCATGTGTTTTGCTTACAAGTTATACAACTTGTTAACAATGGATGTGTAAAATGAAAATAGCTAACCAAGCTTATGAATATACTCAAAATCAAGTTTCAAAAGTTAATAATTATCAAGCTGAAAAAGTCGGCAAAAACTCGCCGCCTACCAACAATCTGAGCAGCACCACTGAACAGCAAAAATTTGATTTTTCTAATA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4919-4170 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEE010000051.1 Pseudoalteromonas sp. MMG013 assembly_contig_51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4918 28 100.0 32 ............................ TTCAAGCTTTGCTGTATCGACTGAGATGGCTG 4858 28 100.0 32 ............................ TGTAAAAATGTGTTCAGCTGTAAGTGGTGGTG 4798 28 100.0 32 ............................ AATTAGTTAACCTAAGCCAAAGCGGTTTAAGC 4738 28 96.4 32 A........................... TTGCTCGTTAATTTCCCACACTTCACCGCGAT 4678 28 100.0 32 ............................ TTATTCGCGCGAAATTTGCGATACATATCGCG 4618 28 100.0 32 ............................ TAGCTCACTGTTCGGTGATTTCGCCATTACTA 4558 28 100.0 32 ............................ TCTAGCGGTAATGCTGGCGCGCCAACCTCTGG 4498 28 100.0 32 ............................ TACATCACTATCTGTTATCTGTCTAAATCCAT 4438 28 100.0 32 ............................ ACGCTGCGTTTAAATCAACACCGTCTTGCAAA 4378 28 100.0 33 ............................ ATAAGGTGGTATACCGAAATCAACTTTTGTTAT 4317 28 100.0 32 ............................ AAATGGGTTGAGCACTACGCCGCTTGGGTCAT 4257 28 100.0 32 ............................ CACAAGTTAAAGATGTGGCCGTTGACGCCCCG 4197 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTGATAGGGGTTAATTTTATTGTATTCCTGAACTTGATTCAGGGTCTGGTGAGGGTGAATAGTAACAGCTGATAGGGGGTAATTTTATTGTCTTCTTGAACTTGATTCAGGATCTAGTGAGGGTTAATAGTAACAGCTGACAGGAATTAATTTTATTGTCTTCCTGAACTTGATTCAGGATCTGGTGAGGGTGAATAGTAACAGCTGACAGGAATTGATTTTATTGTCTTCCTGAACTTGATTCAGGATCTAGTGAAAACGGAAAATACAATAACAGGCATATGACATGTCTGAATTCAGTAATGTGAGGTTAATTATTAGCAGGTGCGGATATTGTATGTCATCATCGAGTCTAACATGATGAAAATACCCTATTATTTTGGCTCTTTAAAAAGTAATTATAAAACAATAAGTTACAGTTGGTCGTTTTTTATATGGTTAAAATGGTATTTTGACCGTAACGAATTGTTGTAACTTATTTTTATGATGATAGTCTATT # Right flank : ATGAGTGACCGAAACGTAGTTTCGCAGCACAAAGAAGTGAGGTCATGGATGACCGATGTGACCCAGCTCCATGGATGGATTGTTTACGCTTAAGTGGCAACTTTATGGACCCTGAAACCAGTTCAGGGCGACGAAGGTGGTGCAGCACTTTGATGTGAGATCATACACATCCCGTCTTCCTGACGCAGGTCAGGATCCACAATACGCATATGTTTCAACATGGACCCTGAAACCAGTTCAGGGCGACGAAGGTGGGGGAAAGGCGACGAAGTTGGGTGATTCGATCACAGGCAGCTTAGAAATATGCACGCCCCGCTTAAGCCGATAGTCCAATTCTTCACTGCCGCACAGGCAGCTTAGGTGATGAGTGACCGAAACGTAGTTTCGCAGCACGAAGAAGTGAGGTCATCCGGATGACCGATGTGACCCAGCTCCATGGATGGATTGTTTACACTTAAGTGACAACTTCATGGACCCTGAAACCAGTTCAGGGCGACGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //