Array 1 43025-39711 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABVII010000011.1 Pseudomonas fluorescens isolate PS862, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 43024 28 100.0 33 ............................ TACGATCACCTCTCAAGGGAGTGCTATCACAGC 42963 28 92.9 33 A.............T............. CTTCGGCGATGACGCGTCCTTTCAGATCTATCA 42902 28 96.4 33 .........T.................. CGACGATCCGATTATCCCGCTGTGCAATATGAA 42841 28 96.4 33 ...C........................ CTTCGGCGCGGGCATGGTCTTCGCTGACTTCGA 42780 28 85.7 33 A.........GA...........A.... CGGGACGGCCCCGAAGGCGTAACCCATGGCTTC 42719 27 89.3 33 ........-....TA............. CAAGTCGAACCTGTACTCTGCGACCGTCAACCT 42659 28 85.7 33 .C.....A......T...A......... CTACTGTCCATCCGGCAGATCGATAAAAGTATG 42598 28 89.3 33 .............TA....A........ CGTCTGAAACACGGTTATTGACCAGACTCAGCG 42537 28 82.1 34 .........T.AAT...A.......... CCACGGGAGAGGTATCGACGGTGAGCCTGGTCGA A [42519] 42474 28 89.3 33 ..........T..A.....A........ CACCAGGCCGGTCAAATCCTGCGTACTGGACAA 42413 28 92.9 33 .............T......T....... CAACGTGGGATTGCAGGGTGACGTGGTGCGCCG 42352 28 100.0 33 ............................ TAACGTGGGGCTGCAGGGCGACGTAGTGCGACG 42291 28 89.3 34 A..............A..........C. AAGCGCCCGGACGCCTGGGCCGAATATGGCTAGT 42229 28 92.9 33 C.T......................... CTCGTCGATCTTGCAGTGCAGGCCTTCGTGCGC 42168 28 92.9 33 ...........T.......A........ CACGCCAGAGATCGCGCGCCATCTCGCAAAAGG 42107 27 96.4 33 ........-................... CATCTTGTGTCGCCGGCGCGCTGATCGGACACT 42047 28 92.9 33 .......................A...T CTCACCCATGCCGACGCGCCTGGCGGTCTTGAA 41986 27 92.9 33 ...........C.........-...... CGGCACACCTACTGCACGACTGATATTTGCCGA 41926 28 100.0 33 ............................ CTCGATTGAGGCGATGTGCAGCATCTGGCCGGA 41865 28 89.3 33 ........AG........A......... TGATTTAGCCGATATCGAAAGCGGCCTGCTCGC 41804 28 96.4 33 .........T.................. TGTGGGAAGCCTCACCCGTATTGAGGGTCTGTC 41743 28 92.9 33 .A.......G.................. TATCGCAGCGGAAAATGTCACTCAGGGCGATGC 41682 28 96.4 33 ...................A........ CATCTATCAGCCTTCAATGCTAAACCGCCGGCA 41621 28 89.3 34 .......T.G...T.............. CAAGGGCTTAAAAAAAAAGAGAACCCCAGGCCTG 41559 28 92.9 33 ..........T....A............ CAACTACATGCCGATGTCGATGCCGTTCCAGAT 41498 28 92.9 33 ..A.....T................... CCAGAACGACCAAGGCACCACCCTGTTTATGAG 41437 28 96.4 34 ...............A............ CGAGAAAGACCTGCACAGCATGACGGCGTCGGGG 41375 28 92.9 33 .G...........T.............. CTACCCCGCGCTCTATGACAAGTCGGCTGTGTA 41314 28 92.9 33 T.............G............. CTCCATGGTCTGGTTGGCTACTTCCTGGTCAAC 41253 28 89.3 32 .A........T.T............... CGACGGAATCCGCCTGCACAGCAATGACGGTA 41193 28 89.3 33 CGA......................... CGGCACACCTACTGCACGACTGATCTTTGCCGA 41132 27 92.9 33 ........-..A................ CAACGCCTCGGCTACCCTGTCGCACCAGCCGAA 41072 28 78.6 29 ....................TT.CC.CA CTCGACATCGATAAAGTATTGGTGAAGCC 41015 28 89.3 33 .....A.....A.T.............. CAAAGAGCAGGAATCTGCCGTTCTTGGCAAGCG 40954 28 100.0 33 ............................ TTACACGCAGCAGGCTTTGCTAGATCCGACTGG 40893 28 100.0 33 ............................ CATCGTCTACGGGATGCCTCTAGAAATGCTGGC CCGC [40880] 40828 28 96.4 33 ........T................... CAAGAAGAGTCAAGGTTCGTACTGGTTCGAGAA 40767 28 100.0 33 ............................ CGCCGTCCAGAACCCCTTGGTCGGTACCGCCAA 40706 28 96.4 33 ..............A............. TAAGTTGACCAGTACCTTGCTGAGCTACCGATT 40645 28 85.7 24 ..............A...A.......GG GCTGCAGGGCGACGTAGTGCGACG Deletion [40594] 40593 28 92.9 33 A..................A........ TAACCAAGCGTCTACCATTGCCGCGATAAGCGA 40532 28 92.9 33 .............T.C............ TGTGGGAAGCCTCACCCGTATTAAGGGTCTGTC T [40529] 40470 28 85.7 33 .........C.....A...T....C... TTCGAATTGCAGCAGGTCATAGCCCAGCTGCCC G [40460] 40408 28 92.9 33 .......T............A....... TAATTGGGGCCAAGACGGTTCGGATTGGGGCCG 40347 28 96.4 33 ..........T................. CAGTTCAAGCATCACCAACCTGACTGCTGAGGT 40286 28 96.4 33 .............T.............. CATGCGTTGCTATTGGGCTGTGATCACCCCGCT 40225 28 100.0 33 ............................ CAGTTTGCAAGGTAGTGATCTGATATGACCCCA 40164 28 96.4 33 ...........A................ CGACAAAGGAACGATCGGCCAAGTCTGCCGAGA 40103 27 92.9 33 ..........T...-............. CTCGTCGAACTTCTTGCCCAGGGCTTCGGTGAT 40043 28 96.4 33 ..................T......... CGGCACACCTACTGCACGACTAATCTTTGCCGA 39982 28 89.3 33 ............T.TA............ CATCTGACTTTCTCATGAAGCGACTCCTATCGA 39921 28 96.4 33 .....................C...... CATCGGCAAGATCGTGTCCGAGTACCGCCGCAC 39860 28 96.4 33 .........G.................. CAAAGCGCACATGATCACCCGAGGCTTTACCCT 39799 28 92.9 33 ..............A..........A.. CAGACACAGGCTGAGGCTGGAGATCAGGAACAA 39738 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 55 28 93.2 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : ACTACCTACAGGACATTGCCTATGCGGTTGCCTTACAAGCACCGGCAGCACTGGCGGATGAAGTGAGCAGCGCACTGGTTAGCCCAGTCTGGGATCTTTACTTGGGACGCAAAAGCTGCGTACCGACCGAACTCATTTACCAAGGCCAGTTCGGCGTGGTGACAGAAGCGCTGCAAGCGGGGGAGCTGCTCGCAGCCGACAAGAACCGCGCCTTTGCCTTGCGAGTGCTACAAGGTGAATACGAAGGAGAGGTACTGACGCTGAACGATGTGCCCCTGCAGTTTGGTGAACACAAAAAATACAGAGATCGTCGAGTTACCGTTCAGAACTGGGAGTAAAGGGAGGGCTGCCAGCCAACGTCTGTTCATCAAGGCCACTCGCCTGGTTTCGAAATGCTGAGCATTTCTGAAGTGCAATTGATTGTGGAAACTCCGACACTTAAAACGATCTGATTCGCATATTTTGTGTTTGAAAAAAGGGCTCTTTAACAATATGTTGGT # Right flank : TGCCGACCGGAAAAGGCGGGACTGCCAAGACGTGTCGGCAACCTCACCTCTTTGATCTGGCGATCATTCTCCCTCTGGCTAGCAGCACGCAGCTCGACGGCGTCACGAAGTTCGTATGTGCTTTCCGGGTTGCCGTGGTTGATGAGTAGGCGATGCTGATCTGGTGTCGTTTGGCACCGCGTTCCTGGCCACCCGGATTTGGCCGAGCGATTCAAACACGGCAGTGCCCTGAACAAAGCAGACCCGACGACGTTCTACCAAGGTGAGGAACGCGGCTACACGGACTATCCGACCATGGCGGAATTCCGATAAACACAATGAGTCAAATATTGGATTAGAAGCCAGTCAGCGCAGTGTCTCCCGCACATCACAAGGCATTCGCTGACGCTTTTGGCTTGCCAGCCATGTCCAATTGCGCGCTTTTCTTCCTTGAATATCCCCTCAATAGGCACGTAGGCGAATGCCCAAAAGTGTGGTCAGGATTCTCCACCAGCGAGCAA # Questionable array : NO Score: 5.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [32-44] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //