Array 1 1034041-1039918 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP011526.1 Methanococcus maripaludis KA1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 1034041 37 100.0 37 ..................................... TTCAATTCCATCAAAAATCCTGCTTTTTTGTGCCAAT 1034115 37 100.0 37 ..................................... GAGATAAAAACGTTATAATTGATTCTGGCGCACATAC 1034189 37 100.0 38 ..................................... GCCATTGCAGTTTCAGGGTTTGTTGAGGGGCCATTATT 1034264 37 100.0 35 ..................................... ATTAATTATAAAACAGGACGTAGGAAAGATAAAGG 1034336 37 100.0 35 ..................................... CCGGAAAGGCAAGAGTTTTGTATAATGATTATATG 1034408 37 100.0 35 ..................................... GTTTCTTGCCATGATGCTGAAACATAATTCAAATC 1034480 37 100.0 36 ..................................... CAGGTCTACGGATTATGGACTAACATGGACTCAAAT 1034553 37 100.0 35 ..................................... AAGAAGTAATAAGGAATTTCTAAAAGGTGGGGATA 1034625 37 100.0 35 ..................................... AGAACGCACCACGAAAAAACACAATAGTTTAAATT 1034697 37 100.0 37 ..................................... TTGCTTTTTTTTGAAGTTTCAACCAATAATCCTTCTT 1034771 37 100.0 35 ..................................... CCGCTTAAAAGTGCTTCAAATTTAAGGAGGGATAA 1034843 37 100.0 34 ..................................... TTTATAATTTTCGTTTCCAAATTTCGTTTTTAAG 1034914 37 100.0 36 ..................................... ATAAATGAGTTGAGTAATTATGAGTGAGAATATAGG 1034987 37 100.0 36 ..................................... AAGTATTCCATAATATATTTGAAATCCCGTTTAGTA 1035060 37 100.0 38 ..................................... TTGGGTGGTCGCAAGTCACATCTGCTGTTAATGTATAT 1035135 37 100.0 45 ..................................... CAAATGATGAAGTTAAAATGATAATTAAAAGGGATTTTACACCCA 1035217 37 100.0 34 ..................................... ATTCTCTTTTTTGAGTGTGATATAAATAAATATA 1035288 37 100.0 36 ..................................... TTAGCCGTCACATCCCCATAATCCATATTATCAACT 1035361 37 100.0 36 ..................................... TACTATTTTGTAATACTATAGTATTATTATAGCATA 1035434 37 100.0 36 ..................................... TAGTTACTTTTTTCTTATAATAAAAAGTACTTCAAA 1035507 37 100.0 35 ..................................... CAAAATTATAAGTTTTTCAGATGAAAGTAACGGTT 1035579 37 100.0 35 ..................................... TCTTATTCCTAATATAATTCTATCATTATACTATA 1035651 37 100.0 35 ..................................... CAAAATCATTCTATGACATAAACCTATTTAATATG 1035723 37 100.0 34 ..................................... ATAATATGCTAAGGTGGTTTTTATGTCAAGTATG 1035794 37 100.0 35 ..................................... ATATTACAAGACAAGAGATAGAATTTATAAAACAG 1035866 37 100.0 35 ..................................... AAGCATTCCAAACTGCATAATTTCCAGTAGTCATG 1035938 37 100.0 43 ..................................... TGAATGCACAGCAGGTAAGTGAAAAGGACGCAGTCCAGTTAAA 1036018 37 100.0 34 ..................................... AAACCGTTCGAGGTCGGTAGGGCATGAATGAAGA 1036089 37 100.0 37 ..................................... ATGAATATAATGAAGCCAAAGAAAAAAGGTTTGAAGA 1036163 37 100.0 35 ..................................... TAATCTGTAGAGTATTCTGTTTCTGGTAAAACACA 1036235 37 100.0 34 ..................................... TTCTCATGTATATTTACAACACGTACCCGATCAG 1036306 37 100.0 34 ..................................... CCCCTGCAGAGTTCACACAAAAAGCTAAAACATT 1036377 37 100.0 38 ..................................... TAATATCTAAATATTCTTCATGCAAACTAGAATAACCT 1036452 37 100.0 34 ..................................... TTCATTACACAACGGAAAGAAAATCGTAATTGAA 1036523 37 100.0 36 ..................................... TTTTATGTCGAGATCTCACAGCTATGAAGTGCCACG 1036596 37 100.0 34 ..................................... TAATGTTATCCAACCTGGTAATTCCATTTGTTGG 1036667 37 100.0 38 ..................................... ATTCTTAACCGTCAAAACTTCCTTTTCTTTTTCAACTT 1036742 37 100.0 37 ..................................... ATATCGTGATTGTTAACGCATCGGCAAGGTTTGTATA 1036816 37 100.0 37 ..................................... ATATCGTGATTGTTAACGCATCGGCAAGGTTTGTATA 1036890 37 100.0 36 ..................................... GAGCCAACCACTAATGCGGTGGCTTTTAAATCGCTT 1036963 37 100.0 35 ..................................... TAATCTATATTTCATTAAACACGGCATTTTTAGGT 1037035 37 100.0 39 ..................................... GCCGTAATGTCTGTATGTTTGCAGTAAACCCCCCCAATT 1037111 37 100.0 36 ..................................... AGGATATCGGGCCAATCTGAGCCGTTAACTAACGTA 1037184 37 100.0 35 ..................................... TATACATGGCAACTGCAAAAGAAGCGGACGATATT 1037256 37 100.0 36 ..................................... CAATTACATTGAATGGATGTGTATCGGATTTGGAAT 1037329 37 100.0 35 ..................................... GCATTTCAAAAAACTTATTATAAACTTCCCTAAGA 1037401 37 100.0 37 ..................................... AGAAAATATCTGAGGATCCGGATCATATTTCAAAACT 1037475 37 100.0 35 ..................................... TTAAATTTCGTTCCAAAATCATCAAGAATTAATAC 1037547 37 100.0 35 ..................................... AACATTATCGACACGATAAACCAATATTTCACGAT 1037619 37 100.0 36 ..................................... TGAATCAAACTATGAGCCTGAAAGAACATAAAAAAG 1037692 37 100.0 34 ..................................... CTTCGTTTCCTTTGATATGTAAAAATCGTTTGGT 1037763 37 100.0 34 ..................................... ATATACTGAAGGAAAAGTCAATCCTTCAGATCTT 1037834 37 100.0 36 ..................................... TCCCTATGCTTATTATGATTATGAAGATATATATAA 1037907 37 100.0 36 ..................................... TTTGGGTTATAATCATTTGAAATTACTTTTTCAATA 1037980 37 100.0 35 ..................................... TAACAAAGGGGGCCATTTGGTCCAAGTTGTTTCTG 1038052 37 100.0 36 ..................................... GATTTGTCAGGATCGTCAAACTCTACAAATATTAAA 1038125 37 100.0 36 ..................................... CTCCTAATCCCAATAATAGCGAAACAAAAGCAACTC 1038198 37 100.0 36 ..................................... ACATTTATGTACTCATTTGTAAGCTTTTTAACCAGT 1038271 37 100.0 35 ..................................... CCATAAGATCCCTCTAAAAAAGGGTGATTTGTAGG 1038343 37 100.0 37 ..................................... ATTTTTAAATTATGCTAATAATCCCGAGTTGAAACGT 1038417 37 100.0 36 ..................................... TGGGACCTCAGCTTCTGGAACAGCTGCTAAATAAAA 1038490 37 100.0 36 ..................................... ACAAGATATCTGCCATTTTTGAAACGTGTTTGAAGT 1038563 37 100.0 37 ..................................... TTGCAGTTTTCTGTTCCAAAGGAGGGATGGCAGTAAG 1038637 37 100.0 37 ..................................... TTGCAGTTTTCTGTTCCAAAGGAGGGATGGCAGTAAG 1038711 37 100.0 36 ..................................... TGGTTATGATGGCGCTTATAATATTGGGATTTATAA 1038784 37 100.0 36 ..................................... TCCATTGTGGGCTTTTTGTTGCTTGTAACGTCTGAA 1038857 37 100.0 36 ..................................... AAGAAGCTAGGGAAAATTCATTGAAGAATGGAGTTG 1038930 37 100.0 39 ..................................... CATATATATTGTACGTTCGACCAATCACAGCGTGGAACG 1039006 37 100.0 36 ..................................... CTTCGAGCACGTTTGCGTGTGCTTTTCCAACTACGA 1039079 37 100.0 36 ..................................... TACCTATTATACACAAGTATAATCCTTATTAATAAA 1039152 37 100.0 36 ..................................... CTCCGAATGCAACTAAACCCCCTAATACTCGTCCTG 1039225 37 100.0 38 ..................................... CACAAACAACGGGTTTTAAAAATGGCAAAAGCGAAGGT 1039300 37 100.0 36 ..................................... AACCATTAATTGTACTATTCCTAATTATAGGATCAT 1039373 37 100.0 36 ..................................... GTTATTTAGATAACCCTTGTGAAAATCCGTACAATG 1039446 37 100.0 35 ..................................... TACTGTCGATAGCCTATTTAGAAAACGGAATAGTA 1039518 37 100.0 34 ..................................... ACAGACTTATTTGCAAAAGGAAAATCATTCAAAA 1039589 37 100.0 34 ..................................... TTGTGCTGATGAAATGTTCGCAGCTGTTGAGGTT 1039660 37 100.0 35 ..................................... CAAGAATCGATATGACATCATCATACGTTCCAGAA 1039732 37 100.0 35 ..................................... GCACACTTCAAGACCGAAAAAAAGACAGTTAGGCA 1039804 37 100.0 41 ..................................... TTAGCCCGCCCCGTTTCCCCTAATTTCACGGTAGCCTGATT 1039882 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 81 37 100.0 36 CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC # Left flank : AGAAATAAATATGACTGAAAAAGACGTCAATAAATTAAGTGAATATTTGGAAGAATTCAGGAAAATATTAACGGGATATTATCCAAAACCAACATCATATAAACAAAGATGTATTGATTGTTGTTATAGAAACATTTGCATAAAATAATTGTTTCTTGAAAATTATCATGCGTTTTCCAAATGTATTTCATTTATTTGAAAAATCAAAATAAGATTTAAAACATTATATTTTAAAAATGCCTGCAAATTTTAAATATTTTTAATCATGTGAAATAAAAATAACTGTAATGCATACCATATCATAAAATAATATATGAATTTTGGTTTAACCAATATTTTCATTTATATAACGTTTAAAATGTAAGCAGGGCATATGAATGATCCATTGAACTAATTTAAACGAGTATTTATTTTTTGTTGATAAAATGAATAAGAAAAGTAAATATAATGGCAGAATCATAAAACTACTTCGTTATTCTAGAGTTTCTATCGTATTATCT # Right flank : CCGAAGCAAGAGCAAGTTTAATTTCTAAAACTCTTTTATCTTCTTCGATAGTTCATGTTTTAAAAAAACAGGGCAGAGATAACGATTATAAAATATGCAGACAGATTAACAAAGATGTTGGGCAAAAAATAAGAGAATCTACTAATCAATACTGCATAGTAGTTATTAAACAGAGAATTCTACTTGAATTTTTTAATGATCTGCAAGTTTTATATAATCTGATGATATATTGTATATCATACTGATATAATCTATATCATGGTGATACATATGGTTCATGTTCAAGTTGATTTAAGCGATGATTCAAACAGGATTATTGAGATATTCAAGGCTCAACATTCAATCCCTAAAAAATCTATCGCAATAGATATGTTTATTTCACAATTTGCGAGTTATGGTAAAGAAGCTTTAGAATACAACCCTGCATTTGTAAAAGAAACAATAGAACATAGTAAAGGTAAGGATTTTATAGATATAACGGATAAAAAATCCAGAAGAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: F [matched CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //