Array 1 15453-17310 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTU01000014.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_4016 NODE_14_length_85958_cov_4.54761, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15453 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 15514 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 15575 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 15636 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 15697 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 15758 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 15819 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 15880 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 15941 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 16002 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 16063 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 16124 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 16185 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 16246 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 16307 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 16368 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 16429 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 16490 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 16551 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 16612 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 16673 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 16734 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 16795 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 16856 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 16917 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 16978 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 17039 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 17100 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 17161 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 17222 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 17283 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33992-35731 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTU01000014.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_4016 NODE_14_length_85958_cov_4.54761, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33992 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 34053 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 34114 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 34175 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 34236 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 34297 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 34358 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 34419 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 34480 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 34541 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 34602 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 34663 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 34724 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 34785 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 34846 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 34907 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 34968 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 35029 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 35091 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 35153 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 35214 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 35275 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 35336 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 35397 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 35458 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 35519 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 35580 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 35641 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 35702 29 100.0 0 ............................. | A [35729] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //