Array 1 66295-67584 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLG010000012.1 Listeria seeligeri strain FSL W9-0478 NODE_12_length_72879_cov_71.101261, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 66295 36 100.0 30 .................................... TATGGAACCAACTATCGCCTATCGTTTCTA 66361 36 100.0 30 .................................... CAAACTTTTTTATTTCTTTTTCTGTGAATC 66427 36 100.0 30 .................................... TAAGAAGGGGATTAGGTAAATACATATATT 66493 36 100.0 30 .................................... AGAAGATTACTTACAAAAAAGCATTCTTCC 66559 36 100.0 30 .................................... ACGGACGGTGTAGGTTTTGTCAGTGATACC 66625 36 100.0 30 .................................... TGTCCTTGTTTAATCCCGGTTCTAACATGA 66691 36 100.0 30 .................................... TTTTGATATCCCGGAGACTATCGACAAAGA 66757 36 100.0 30 .................................... TACCCGGAATTGGAGAATTTGGGTCATCAT 66823 36 100.0 30 .................................... TATCTCCCAAATATAGAGGTCTTATCGAAC 66889 36 100.0 30 .................................... CATGCTGATGTTTGGACTGATACGGAAGTA 66955 36 100.0 30 .................................... TTCGTATAGATTAATTGCATCGGAGTCCAA 67021 36 100.0 30 .................................... TATGGAAGAGGAATTTATTCATGAGGAAAG 67087 36 100.0 30 .................................... CGTCGAATTTGTCATTATTCGGTCGTCGAA 67153 36 100.0 30 .................................... CACAAAATGCTATCAACTAGAAGGTTATGT 67219 36 100.0 30 .................................... CTCTTCTTTCACTTTCTTCACTTGTCTGCA 67285 36 100.0 30 .................................... AGTGAACATGATGTAGAAGTGAACGTCTTG 67351 36 100.0 30 .................................... TCTAAGAAAAACAGAAAATAATCTTTTAAA 67417 36 100.0 30 .................................... GTTCCCCTATCTGTTTTAGTGCCTTCTCTG 67483 36 100.0 30 .................................... TACAATGAATAATCATATTACCGACTTAAC 67549 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGACAAACTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGACTCGAATGCTCTTTGAAAATAAAATATATTTTAGTTAAACCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGAGAGGGTGAAATATCCTTTACATCTATTTTTTTCTATATCTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTTGCTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAATGCCAAAAGCGCAGTAATGGCAAAACATGCGCATCCGATTATTCCTAAAATATGACCAATAATAGAAATCCCGGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTGCATAAAAGAAAGCACCGACTCCGCTTGTTTCTGATCCATCTCCGCCTGAGAAACTTTCACTGAAAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 62392-61387 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLG010000002.1 Listeria seeligeri strain FSL W9-0478 NODE_2_length_272690_cov_62.488718, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 62391 29 100.0 39 ............................. GTTGGTTGCAAATGGTGAACAACCGTTTGCCTGCCTTCC 62323 29 100.0 36 ............................. AGCAAAATATAAATCACTGATATAAACATGCCGACT 62258 29 100.0 36 ............................. TAGTACAAACAACCAAATATCAATCTTGTCATTCAT 62193 29 100.0 34 ............................. GGAATACTCATATTTACATTGTTACTTATAACAA 62130 29 100.0 34 ............................. ACGGGTCTAACACGCCATGACTATTTTTATCATC 62067 29 100.0 35 ............................. CATGGATTTACTATGTGGGATTCTATCTTGTTAAT 62003 29 100.0 36 ............................. TGGAGCGAAAAAGAAGATGAGTTTATCAAAAAATAT 61938 29 100.0 37 ............................. GCTACAGTATTATAAACAGTAGTTTCTGCTTCGCTTA 61872 29 100.0 36 ............................. TTGGCTAAACTAATCAATCCGTGGTTCGTATCTCTC 61807 29 100.0 38 ............................. TTGATAGCTCCTACCAAACCCGCTATTTTAGAATAAAC 61740 29 100.0 36 ............................. ATGATAAATCTCCCTCACTGAATCGAGGAAGATTAT 61675 29 100.0 35 ............................. TCGGAATTATAATATCAGTTCTAGCCGTTCTCGGA 61611 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 61546 29 96.6 36 .......C..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 61481 29 82.8 37 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCCC 61415 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ======================================= ================== 16 29 96.8 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGAGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGGTATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGATCGACAGAAACGTGGGAAGCCTTAGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAGTAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACAGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGCGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 72257-70996 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLG010000002.1 Listeria seeligeri strain FSL W9-0478 NODE_2_length_272690_cov_62.488718, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 72256 29 100.0 37 ............................. GAATACGCATTCGTTAAACACTTTTCAAATTCTCTTT 72190 29 100.0 37 ............................. TATGGACTCAGATAGATACTTTGTAAACACGATAGTT 72124 29 100.0 35 ............................. AAATATCCACAAAACGAATGTAGTTATGAATAATC 72060 29 100.0 36 ............................. TTAGAAAATTATCGAGCAAATGTTTCTGATGACAGT 71995 29 100.0 38 ............................. CCAGCAAGGCCATATTAATGGAAATTCAAACAATTGCA 71928 29 100.0 35 ............................. TCGTTATTGATTAGAACATAAAACTGTTCTCCAGC 71864 29 100.0 34 ............................. CCTTCTAATTGGAATTTGAACATACCATCGTTAG 71801 29 96.6 36 ......................A...... TCATAAATTTGGGGGCGGTTACGACAACTGTCGGAG 71736 29 100.0 38 ............................. CTTACTACAGCAGGCGAATACGACGAGGATAATTTAAA 71669 29 100.0 34 ............................. GAAGGTCTTTTTGACTTATTTAGTAATATGTTTC 71606 29 100.0 36 ............................. ATTTAGAAATCAGTGTGCATTTAAACGCAGGCGGGG 71541 29 100.0 36 ............................. ACTTTTAACGACGTTCGAGCAGGTCGAAGCAAAATA 71476 29 100.0 36 ............................. TTTGTATATTGCGTAACGGGGTACATAACTTCTTTG 71411 29 100.0 36 ............................. CGCATTTTTATGTCTAGTGAAAGTTCCTTAATCAAC 71346 29 100.0 35 ............................. TCAATCAAAACAATTGATTCATGGAATGGTTATGT 71282 29 96.6 35 ............C................ GAGGCATCTGCTAGTAAAGTGAAAAAAGAATTTAA 71218 29 96.6 34 ............C................ ACTTGACCGTTATAGCTTGCAAATAGGGCTTTTC 71155 29 96.6 37 .......G..................... TGGCATAATGCCCATTGACCTTGTAAGGTTGGTCAAG 71089 29 100.0 35 ............................. ATGTATTTCGAACAACTTTTATTAGGGTATAAAAC 71025 29 89.7 0 .............C..A...........G | T [70998] ========== ====== ====== ====== ============================= ====================================== ================== 20 29 98.8 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATTAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATTCGTTGGGAGAGAATGAGAGTGGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGTCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCAAGTAGCACTATCATAAATTTTTCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATACAGCAAATGTTGAAAAAAACACTAGTATTTTCAGTTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAACAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTAAGTTTATTCAAGACAGGAATTGAGAAATCTAGTCCAGAAAAATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACCTGCCTAAGCCTAAAAATAATAAAAATGAAATTTATCTTGAAGAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 79301-78492 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLG010000002.1 Listeria seeligeri strain FSL W9-0478 NODE_2_length_272690_cov_62.488718, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 79300 29 100.0 36 ............................. ACAGGTCAAGAGTATATGATGCCAGAGTTAGGTTTA 79235 29 100.0 35 ............................. TAATACCACTTAGACAAGTTTTCACAAGTAAAGTC 79171 29 100.0 36 ............................. GCATTAATATTTACGTGATTATAGTCAATAGTGAAC 79106 29 100.0 36 ............................. ACTGCTTGCGTTTTTCAACAACTCGACATGGCAAAG 79041 29 100.0 37 ............................. TGACACGTGCAGCAACTGCTTTAAAGTCCGGATTTTC 78975 29 100.0 36 ............................. AACCTATCCGGGGCAGTGGTTAACAATGTGTTTGTC 78910 29 100.0 35 ............................. CTAACTCTTGAATAGCGCTCTGGAACTCTTCGTTG 78846 29 100.0 38 ............................. TGTGTAAACGGAGAAACGTTTGAAGTAGAGTTATTAAA 78779 29 100.0 35 ............................. TTTTCAACAATTTCACGTAAATCTTTTTTATAAAT 78715 29 100.0 35 ............................. GCTTGCTGAACGTTGTAATATAGCGTTCAAGCAAC 78651 29 100.0 36 ............................. TGACACAGAGGGGGAATTTGAAGGACATGATATTAC 78586 29 100.0 37 ............................. GATGCTGCAGCGTATATAATTTAATTGAGCTAATTTT 78520 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 99.7 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAGACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTTGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAATGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //