Array 1 2404380-2401733 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024480.1 Caldicellulosiruptor sp. YA01 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2404379 29 93.1 38 C.A.......................... TCGACGATTTTATAGCCAAGCGGTGGGATTCCGCCATT 2404312 29 100.0 37 ............................. GAGTCAATCATTTTAGAGTCGGTTCTGGAAGGTATGG 2404246 29 100.0 36 ............................. TGCTTTTGCTTCAGTTGCCGTTGGACCTAACAGATA 2404181 29 100.0 36 ............................. ATCCGAGAAGGCAGATGACAATGAGCAGGTGGAAGA 2404116 29 100.0 36 ............................. ATGAAAGAGCTGAAAGCAGATTTAATGAGCAAGAAA 2404051 29 100.0 37 ............................. CCAGCACAAAAGAAAGCATTGGAGGAACTTATAGCTT 2403985 29 100.0 36 ............................. GCTAAGTCCACTTTCGCACATTGGAGAGAGTCACGG 2403920 29 100.0 36 ............................. CAAATTCCTCTGGAGCTATATCAATTGTTTCTTTGT 2403855 29 96.6 37 .........A................... CGCTGAGAAGTAAATACCTTTCTTGTCCTATCTTTTG 2403789 29 100.0 37 ............................. TGTTTTGTAATATCTTCACCATTAACGTTATCAGCGT 2403723 29 100.0 38 ............................. TAAAGAAAGAGGGAAAGTAAATGGCTTTGATAGATTTT 2403656 29 100.0 37 ............................. ATCTGCTGCTGAATTTCTCTTGTTTTTGTCTTAATTT 2403590 29 100.0 38 ............................. GCAGTTGTTCTAACTCATCTTCCCCAGTAGTATTTAGA 2403523 29 100.0 36 ............................. ATAGTGTTCTTTTCGGATAGTGCAGAAACCAATGAG 2403458 29 100.0 36 ............................. TCGATAAAACCAAACCCTTGTCCTCTTCTAAATCTA 2403393 29 100.0 36 ............................. AGAAGATAAAAAACATTTGTCTTGATAATTATCTTC 2403328 29 100.0 35 ............................. CTTTGATAGTGGAATACCCTTCTTCTGCGACAAGG 2403264 29 100.0 37 ............................. AGAGAAATTTTAAAAGAAACTATGCGGGAGATGATGA 2403198 29 100.0 36 ............................. TTTGATGTTAACACCTTTCTCTCTTCATATGCTTGT 2403133 29 100.0 37 ............................. TGGTAAAGCAGAATTTGATAATACATGGCTGAACACA 2403067 29 100.0 35 ............................. GATGTGCTGTGTCGATGCGCTGTGTTGTTGTGAAA 2403003 29 100.0 36 ............................. TGAAGGATAATATTGCCGCCTACATTAAATCACTGG 2402938 29 100.0 38 ............................. TGGCTTACGCGCTCAACGTTAGCTCATGTACATTTTCC 2402871 29 100.0 36 ............................. TTCGGACGACTTCATAGAAGAGGCGTATAAGACACT 2402806 29 100.0 35 ............................. GGGAAATAGAAAGAGTGAAGAAACAAGTAATCCTA 2402742 29 100.0 36 ............................. GTTTAAAGTTTCTAAACCCGGCATCTCTGAAGTAGT 2402677 29 100.0 35 ............................. CAACCGCAAGGTCGTATAGCGTCTTGTTTTGCTGC 2402613 29 100.0 35 ............................. TCTTCTTATGATAGTTTCTTAACTTTTTGTTCTAT 2402549 29 100.0 36 ............................. GTTAATATGCCAGTATCTTTATCAACTTCATAAATT 2402484 29 100.0 37 ............................. CAAACTCGACAGGTTTGCAATGAATAGGTATGATTCG 2402418 29 100.0 36 ............................. AAGCAACAAAAAAGCCCCGCTGAAGCGGAGCTTTGT 2402353 29 100.0 37 ............................. TTATTAACGGCACCCGCTCAGCTGAGACCCTCACTAG 2402287 29 100.0 37 ............................. AACAACTTGCCAATCTCACCATTGAAAATCTGTTCAG 2402221 29 100.0 37 ............................. TTCAAGCATACATCAACAACTTCATCTTCTCCCTGAA 2402155 29 96.6 36 ................A............ TATAATCGAGTGGCATTTTTTTGTATTTTGAACAGC 2402090 29 96.6 37 .........A................... GAGGCTTTTAAGAGCCATCAGATAGCGCAGGATATAA 2402024 29 93.1 38 .......A....................G AAATGTTCCATATCTGCCAGAGTAGAAGTATTCCTCTT 2401957 29 96.6 36 ............................G CAGGCATTGCATAAACAGCTATAATATCGAGATCAC 2401892 29 93.1 37 ........................G...G ATTAGAGATAAAATATTTTTTAGTATACCCATATCAT 2401826 29 93.1 36 ..............G.............G TTTAAAGACACGGGTGTGTTGGGGTAAACAACTTCG 2401761 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 41 29 99.0 36 GTTTTATCTGAACTATTAGGGATGTAAAC # Left flank : AGACGTTTTCGATTTCGGAGCAAAAGATTTTTCTAAATCTTGAGAATGTAGAGATAGAGGGTATAGTATCGAAGTTGCAGAAAGATTTAAGCTGGTATGAGTTGAGCAAGACAGCACGGAGTTGAGTTAAGGTAGAGAATTTGAAGATTTTTTGGATGAAGAAAGCACATAACATAGATTGCAAAGAGAAGCATCTATGTTTACCGAAGTATTTATAGTAGGCTTTAAAGAAGGATTGAGGGATGAAGTTATTGATATTGATGTATTTGTTGAAGAAGCCAAGAAGGTTATGAGGGTTATTGAGAGCGAGGTTTTTAACGTGCTCATAAAGTTCTAAAAAAGAGAGTTGTTTATTATGATTTTTAAACATTTTATCCTCCTCCTCATAGAAAATATGTTTTATACAGTTATATTTTACACTATCTATGAGGAGGAAGGAATACTTTTTTGAAGATTGTATAAAGCTTGATAATGCTCATCTTGAGCGTTTCTGCAAAAGG # Right flank : TGTTAATGATAAAATAAAATCATCAAATGACACTAAAAATTCCCCACTTGCCACTTAAAAATAAGCCTTCTGTAGTGTAGAATAGAAAGTATGGAAAAACTCCAGAAGGAGAAGATAACAAGAAAATGTTGGGGGTTGAAATGCACACAACAATCTACACACTTTTCAAACGGGGATACAACAAAAGTCAAATAGCAAGATTGTTAGACATGGATAGAAATGTTAATGATAAAATAAAAATGTACTGAAAGTGGAATATAAGGATGTACAAAATTGTACATTGATATGATATCCTTTCTCATAGTGAGGAGGGATATCAAATGCAGAACTTAACAGCACATTTAAACATGATAAAGGCGATGAAAATGAAACCTAACTTTTCAGAACTTGCAAGAATATATGGGATGGATAGAAGAACAGTTAAAAAATATTATGAAGGTTATGAAGGAAAACCTAAGAATAGGAACAAACCAAGTAAATTGGACAAATACTATGATAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATTAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 2424183-2407822 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024480.1 Caldicellulosiruptor sp. YA01 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2424182 29 100.0 36 ............................. TAAAGTTAAAGGTTGTACTGCCGTCATTGTTGACTG 2424117 29 100.0 37 ............................. GCAGTTGTGCAGCTTCTTTTATTTTCTCTGTAGTTTT 2424051 29 100.0 37 ............................. GGAGTAATAAGCTGCACTTGAACAATTTCATTGTTCA 2423985 29 100.0 37 ............................. TCAAAAGTTAGTAAAAACGGTGTAACAAACTGATTTA 2423919 29 100.0 38 ............................. ACTGGTGCTTCAATGCCTTACGTAACACTTGGTGAAGA 2423852 29 100.0 37 ............................. CAAAAGGGCAATTGGCAGGTTTTGACAAGTTATATAC 2423786 29 100.0 38 ............................. TATCGAGAAGTAATACACTTAAGGAAGTTTTACTACAA 2423719 29 100.0 37 ............................. ACCTTTACAAATCATGATATTGCGAGATGCAAAAACT 2423653 29 100.0 37 ............................. GTGTTTGAATTATATAATGGTATGCAGAGAGTAAGTG 2423587 29 100.0 38 ............................. TGATACAACTAAGTTTATAAGCTATTGATGGTTTGTTA 2423520 29 100.0 38 ............................. TCGTATGATGCAGAAGACTCAATTGAATTATCACTTAC 2423453 29 100.0 36 ............................. TTATTTGGTACGATACACAAATTGATTTTGATTACT 2423388 29 100.0 38 ............................. CATTTTTAGCTAAATAAAACTATATTTATCCCTTTCGG 2423321 29 100.0 37 ............................. GTAAATTATACTTGATATTATTGGTGTCCCCAAAACC 2423255 29 100.0 38 ............................. CACAGGGGAGCGCTGGATGAAGTAGAAAAGGCTACCGC 2423188 29 100.0 37 ............................. CCTGAACCACCATTTGTTTTGACAATTGCTGTATCGG 2423122 29 100.0 38 ............................. AAATGGCACGGAAATAATACTAATATAAATAATACTAA 2423055 29 100.0 37 ............................. ATCATTCAGCAGATAGAACAAATGTTGCTTGATATTT 2422989 29 100.0 36 ............................. TCTTCTGGCACTGACCAGTCACCGGACCAGAAAGTG 2422924 29 100.0 36 ............................. TCGTTTGATTGTCTTGAGTTGGTATCTCGAACTGCC 2422859 29 100.0 37 ............................. TAATCTTAGCAAGATAGCCATACAGGAATTTGCTGTT 2422793 29 100.0 37 ............................. ATTAAAGTTGAGAGTGTGAATAATATCAATATAGATG 2422727 29 100.0 37 ............................. GTTTTTATATGTGCTGTATCAATTGACGTATTTGCTA 2422661 29 100.0 37 ............................. TTGTCGAATCGACAAGATCTTTCAAATAAACCTCAAA 2422595 29 100.0 37 ............................. GTGTTCATGATTGCCTCCAGTAATTGCCAAGATTTTG 2422529 29 100.0 36 ............................. CTTTTATTAATAAATTTATAGCTTTTTCAAGTAAAG 2422464 29 100.0 37 ............................. GTAAAGCTTTATATACTGCAGCATCGTATCTGTTACG 2422398 29 100.0 37 ............................. TTTGAAATTCTGATTGATTTAGGAAATTACAACCTTA 2422332 29 100.0 38 ............................. GAAATCCTTTTATTCCTACTGCTGCTAAAAATCCTAAA 2422265 29 100.0 37 ............................. TTTCAAGCCAATAACTCATCGTATCACTCCTTTATCA 2422199 29 100.0 37 ............................. GTTAATGTAAATCAACCGCAAAATGTTCAAATAATAA 2422133 29 100.0 37 ............................. TGTAAAAGACTTCAAAGCACGCTACCCCAACATCGAC 2422067 29 100.0 37 ............................. ATCGAAGAATCAAAACAATCAACTACAGAAGTACAAC 2422001 29 100.0 36 ............................. CTTTACATGCTGTTTGACACAATCAAATACATCAAG 2421936 29 100.0 37 ............................. TTTAATTTGTGCTGATACAATCAAAAACCGGTTTACT 2421870 29 100.0 35 ............................. GCTGGTAGTTTTCTATGGTACTGACAGGTTCAGTT 2421806 29 100.0 39 ............................. CCTTTATTGAATAAAACCTAACTCTTTAGCTTTCCTCAT 2421738 29 100.0 37 ............................. AAGACCAAGGAATATTCCTTTACCGATTTTGACGGAA 2421672 29 100.0 37 ............................. TTCATATTTTGAACATAAAATGTAGGATTATCACCAG 2421606 29 100.0 37 ............................. ACTTACAATTTTTGGGCTTTGCCAATGCCAAATGATG 2421540 29 100.0 38 ............................. TTTTTTCCATTATAAATTGTGTTTGAAACTGTATTTAT 2421473 29 100.0 38 ............................. GGAAAATCGAAGTGCTTATAGGAAATTTGAGAAGAAAG 2421406 29 100.0 38 ............................. AATAACTACTATCTTATAAGCTTGTTATTTACAATGAG 2421339 29 100.0 38 ............................. ACAATTTTAGGAACAACATCAAAAAGTCCTCTTTATAT 2421272 29 100.0 37 ............................. TTTACTTGTGGATTTGTTGCACTATTACAATGCAATG 2421206 29 100.0 38 ............................. TTTTGAATTGTTACATTTCTAATATCTACTTGACCAGT 2421139 29 100.0 39 ............................. ATGTGCGTAATATTTCAGAGCTGCAAAGAATCTGTCAAG 2421071 29 100.0 38 ............................. GAATATGGAAAACACATTGTTTTTGTAGGGTCAACAGG 2421004 29 100.0 37 ............................. TGGTTGGTAGGAATTATCATTGGAGCTATTGGTGTTT 2420938 29 100.0 37 ............................. AATCTTGTACCGCAATTTCAACACTTACTTCACCTAA 2420872 29 100.0 37 ............................. GCCAATAACGCTACTGGAGTAGCAGTAACAACCACAA 2420806 29 100.0 37 ............................. CTTGCAAGCGAAAGCAACAGCCTGGACGGATTGAATT 2420740 29 100.0 37 ............................. TTCAGAAAAGTTCTTAGAAAATTAGTTGAACAAGGAG 2420674 29 100.0 37 ............................. TTGCAGACAGCAATATCAAGGCAAATTACAAGTTAGC 2420608 29 100.0 37 ............................. GAGTTATAAATATTCGTATGTATATGGCAGTAGTAGA 2420542 29 100.0 37 ............................. ACGGCAACTGAAGCAAAAGCAAGGTATGACGAATATT 2420476 29 100.0 38 ............................. AAGAATTTCTTGAACAGAGGAGTGATGTTTTTGAAACA 2420409 29 100.0 36 ............................. GCTGATATAGCCTGATACTCTGCTTCAGTTAATTCA 2420344 29 100.0 37 ............................. ATGAAAGAGCTGAAAGCAGATTTAATGAGCAAGAAAG 2420278 29 100.0 37 ............................. ATAGAATTTATAGAAAAGTTTTGCAAGCATTCAAAAG 2420212 29 100.0 36 ............................. TTGTCTGTTGATGAAGCGAAAGAGTTGGGGAAAAAA 2420147 29 100.0 37 ............................. CAGATTGTGAATGCTGACCAATTAAAAGTTTTAAAGG 2420081 29 100.0 37 ............................. AGGAAAGTTATAGTATATGTGCTTCCTGACACAGCAA 2420015 29 100.0 37 ............................. TAAGGCAAATCAGCAAGTATCATATCTATAGATTTGT 2419949 29 100.0 37 ............................. TTTTGATTTATTTTTAGGGCGAGGGGTATATTTATAT 2419883 29 100.0 36 ............................. ATGTGGTTGATAAAGCACTAAAACAATTACAAACAC 2419818 29 100.0 37 ............................. TATATTCAAATGGAAAAGTTTGAATTTGTAGATTTTT 2419752 29 100.0 37 ............................. TCCATTTGTTGGTGTTGCACAGCTTATCTTTATCGTA 2419686 29 100.0 37 ............................. TAAGCATAGGTTCTGGTGGTACAACATTAAATTGCAA 2419620 29 100.0 38 ............................. TTTATTGAAGACGAACAGGACTTTATGATTTTGCTTGA 2419553 29 100.0 35 ............................. CCAAGTGTGGACACGACGTGCACAGCAACCCCAGC 2419489 29 100.0 36 ............................. AATTTTGTGATTTGATAGTTAAGCGTTATTATGATG 2419424 29 100.0 37 ............................. GTATATGAGGAAGGAGAGGGAGCATGAAAAACATTAA 2419358 29 100.0 37 ............................. TAAGAAATTGAATTGCTAACTACTGTATTGTTAATTT 2419292 29 100.0 38 ............................. TACTTCAACGCCCTGTCCTCCGCCTGCGTTGATATGAA 2419225 29 100.0 38 ............................. TGATACAACTAAGTTTATAAGCTATTGATGGTTTGTTG 2419158 29 100.0 37 ............................. CCATTAGTTAGAGATGATGATGAGTTAGCAATTAATA 2419092 29 100.0 37 ............................. CTTAACTCCTTAAAAGCTGTAGATACAAACTTAAAAG 2419026 29 100.0 37 ............................. AATGCTATATTTGGCGAAAGATATTTGTTTGTGCCTT 2418960 29 100.0 38 ............................. CTTTCAGTAAATAAAACAAAAAAAGAATATTCTATTGG 2418893 29 100.0 37 ............................. AAGTAGGGCTGGTCTTTTTTTTATTTGCGTTTAGAAT 2418827 29 100.0 36 ............................. TGTTGAAAAACTGGGCGGTGAGGTCAAGATAGAATG 2418762 29 100.0 37 ............................. TCTTCTGTTATAGCTTGTCCGTCTTTTATTTCTTTTG 2418696 29 100.0 36 ............................. CATTTACACGTAAAATTTAAGCATAAATTACTGTTA 2418631 29 100.0 37 ............................. GCAAGCGCTTTTTGCATATTTGAAAAAGCGTTACCTA 2418565 29 100.0 37 ............................. CGGGCTATATATGCCGCTGCGGCTGCTATACAAGGGG 2418499 29 100.0 36 ............................. TTACAGAGAAGCATATTATGAAGCCTCAGCAAATGA 2418434 29 100.0 36 ............................. AACTCTTTATTGGGTTTATTGATAATAAGCCCGTCT 2418369 29 100.0 36 ............................. AGATTTGGAAGATGATATTGAAGGCACACCTGTTGA 2418304 29 100.0 36 ............................. ATAACCGTGTAAAAACAATCTTTAAAATTCCAATCT 2418239 29 100.0 37 ............................. TGTATCTGTTTCATAATTTCCTGAAAGCTTTTCCCGT 2418173 29 100.0 37 ............................. CGATTTGGAGCATTTGTATAACTAATAAGATATTTTT 2418107 29 100.0 37 ............................. TCATATATTGCTACTTCCTTTACTTCTACCAGTAAAT 2418041 29 100.0 37 ............................. AGAACATTTTCAGTGAACCTTAATATTTTGTGCACTT 2417975 29 100.0 37 ............................. CTTATTAAAATAGACGCTGACGGGAAAAAGCTTATTA 2417909 29 100.0 37 ............................. AGGGCTTATTTGGCTGGTATCTTAAGTAAGTCTTCAA 2417843 29 100.0 36 ............................. CCCGCAAACTAATTTATTTGGCAAACTGCCAAACAC 2417778 29 100.0 37 ............................. GAAAGAGAACTTGACAATCTCATAAGTGAAATAGAAA 2417712 29 100.0 36 ............................. TGTTTTTGAGTAAGTAATTAGCAATTGCTGCCGCCA 2417647 29 100.0 37 ............................. ACAGTCAATGCAGTCTCAGATGATAAAATCACTGTTA 2417581 29 100.0 37 ............................. ATGCTAATATTGAAAGTACAAATAGGGTAGTTAAAAA 2417515 29 100.0 38 ............................. TTGCAAGAGGATGATAAAGGATGTTAAGAGGTATTTAA 2417448 29 100.0 38 ............................. TGGAGAGGAACTGGAGAAAGAAGATTTAGAGGTTATAG 2417381 29 100.0 37 ............................. AGGGATGGCACTGTTGAATTGAAGAAAGTAAAAGATA 2417315 29 100.0 37 ............................. TTGGTATCAAAAAGTTGTTTCAATGGTATTGTATTAG 2417249 29 100.0 36 ............................. CTTTGAATTAACGGGTTATAACAAATTTGTCCCTTT 2417184 29 100.0 37 ............................. AGGCGGGATGTTGAAGTGGAGTGGAGAGGCAATCCTG 2417118 29 100.0 36 ............................. GAAACAAAATCAGCTTACAAATTCCCACATCATGAG 2417053 29 100.0 38 ............................. TGTTCTTATTTCGACACAATTTGATTGACAAGATTTTA 2416986 29 100.0 38 ............................. AAGTATAAAAACCTAAAAATATCACAAAGTCATGTACA 2416919 29 100.0 36 ............................. TGTTGCTCAGCCAAGCGTATAGCTGAAGTGCGTTTC 2416854 29 100.0 38 ............................. ACTTTTACAGAAGTGTCTGGATTAGTTGATAGAGTTAA 2416787 29 100.0 37 ............................. AATAACAAAGTTGGGGAAAAATTTTTAGACCTTATTT 2416721 29 100.0 38 ............................. ATGTATCATACCCAGCCCAAACAGCTGACGCAGTAGCC 2416654 29 100.0 37 ............................. CATTTTCATTTGATTGAGCGAGGACATTTTCAGAAAA 2416588 29 100.0 37 ............................. TCAGGGGATTGTGATGAATGGCTGTCTTTTTCTTTTC 2416522 29 100.0 36 ............................. ATTTTTGATTCAATTTCAGAACAAATTTTTTCATAG 2416457 29 100.0 37 ............................. TTTTATTTCCCTTTCAGTTTCTTTTATGTCTTCCCTG 2416391 29 100.0 36 ............................. ACAAGCTGTTCAACAGCATTTACAATGTCTTGTATT 2416326 29 100.0 36 ............................. GAAAAAACAAGTATATCACTCGAGTATGCAGTAAGG 2416261 29 100.0 37 ............................. TTTTCAGTGGGTTGAAATAGAAAACAATGTCGGTTAT 2416195 29 100.0 37 ............................. TATGCCGTTTTTCTCTGCTGCTGTTCCTGTTGTTCCT 2416129 29 100.0 37 ............................. TGGTAAAAACAGTAAAAACATTTATGCCTTTAAATTT 2416063 29 100.0 37 ............................. AAAACAGGCATGGCAGAACGGGAACGGTTAATTTATT 2415997 29 100.0 37 ............................. GGTATGAAGCTGGTGATATAGATGTTGCAAGTTTTTG 2415931 29 100.0 37 ............................. CAGACCAATTTTATCTGACTTGCGTGAATGTGGCGAA 2415865 29 100.0 36 ............................. CATTTAAAACTTGCAATACTTCGGCATGAAAACCAG 2415800 29 100.0 37 ............................. TTGACGACAAGGTAATTATCGTTATCAGGTTGGACTA 2415734 29 100.0 36 ............................. GAGTGTGCGTAAGTAGTTGCCAAGAGCGTCCCAAAA 2415669 29 100.0 36 ............................. AAAAACTCTATCTCGTCTCTGGTGATTGTATAGGTA 2415604 29 100.0 36 ............................. TCATGAAGATGTATCAAACAAGCTCTATGCCACTGC 2415539 29 100.0 37 ............................. GTCAGCAAGTGTTAGGGGTAATCCTAACTCACTCAAG 2415473 29 100.0 37 ............................. GATTCGGATAATGTGCTAAAAGCTGTGCTTGATGCTT 2415407 29 100.0 37 ............................. ATATACATATTCAATGTAAGCTCTTCTTGCAACTTTC 2415341 29 100.0 36 ............................. CTTATGTAGGGGCAACTTTTGATTTAACAACGCTTA 2415276 29 100.0 38 ............................. ATACGTTTGAGGTTGTGTATGAGGATGGACGGATAAAA 2415209 29 100.0 38 ............................. ACGCAGAAATTCTAAACGCAAATAGAAAAAAAATAAAG 2415142 29 100.0 37 ............................. ACATGGTTTATCAAACTCTTCACAAAAGAAGGCGATG 2415076 29 100.0 37 ............................. GTGGTAGGATTAACCCAAAAACAAGATTAGAAGACAA 2415010 29 100.0 37 ............................. ATAGAAATTACAGACAAAGAAGGATTTTTAGAAACGT 2414944 29 100.0 37 ............................. CTTTTGGCTGCTTGCAGAGGCGATTCTGCCTCCACAG 2414878 29 100.0 36 ............................. ATTGTTGGTGGATTGGTTGCTGCAACAAAATGGAGT 2414813 29 100.0 37 ............................. TTCTTCCCTGCTAAAGGAACATCATTGCAGGAATATA 2414747 29 100.0 36 ............................. GAAAATGAAAAAAGGTTGAGAATAGGTGAAAGCGAG 2414682 29 100.0 37 ............................. ATTCGTACCAATAACGATTTTTGTATAAATCGTAGAA 2414616 29 100.0 36 ............................. TAGGAGAATACATTGCAAGTTTTAATTCCAAGAAGG 2414551 29 100.0 37 ............................. TATTTAAACGATGTAGTTAGAGCAGCAGTTGATACAA 2414485 29 100.0 36 ............................. GACTGAATTCACTTCATCTTTCTTGTTTCGTAACAA 2414420 29 100.0 36 ............................. TAGGAGAATACATTGCAAGTTTTAATTCCAAGAAGG 2414355 29 100.0 37 ............................. TATTTAAACGATGTAGTTAGAACAGCAGTTGATACAA 2414289 29 100.0 36 ............................. GACTGAATTCACTTCATCTTTCTTGTTTCGTAACAA 2414224 29 100.0 37 ............................. TTGAAGTTCCTGAGCTCAAGGGCCAAGAGCTTCATTA 2414158 29 100.0 37 ............................. TATTCTTTAATTTCTCAAATTCAGTTGGCTCAAATTT 2414092 29 100.0 37 ............................. CCAAGCGCAGTCCCCAAATTTTTAATACCATTTAAAG 2414026 29 100.0 37 ............................. GAAATCAATTGGTATGTGCGCGGTGATAAAAAGGAAA 2413960 29 100.0 36 ............................. AGAAACTTGCTCAAGAACTTGGTATCCAGTTTGACG 2413895 29 100.0 38 ............................. AAGATGATGTAGCACCATATGTCGCACTTGGCTTTAGA 2413828 29 100.0 37 ............................. TTGATAAGAAAACTATTAATGAACTTTATACTTTTCT 2413762 29 100.0 38 ............................. TGATTTTAGGATTTGGTGGTGGGGCTTTTGATTTTAAA 2413695 29 100.0 37 ............................. TGGTATATTGCCTTTGGTACAGTTTTTCTTGCACCAA 2413629 29 100.0 36 ............................. GTATAGTAAGGTTCTGGTTGATAAAAATTTCCATAG 2413564 29 100.0 35 ............................. ACAATCTGCTTGAGTTAACTCTTCGTCTATTTCTG 2413500 29 100.0 36 ............................. TCGAACCCTGTCGCTGGGCAGATTTGGTTCGACTCC 2413435 29 100.0 36 ............................. ACTTGATCGCGCATACGTTTTGTAAATTGTACAAAC 2413370 29 100.0 37 ............................. ATGTAGAGTTTTATAAGGCCAACCCTGACTAATTTGT 2413304 29 100.0 37 ............................. CTAAAGCTTAAATCTTTAAAAGTGTCAAAGTTTCCTG 2413238 29 100.0 36 ............................. CAACATTTAATTAAGATTTCTTTATAATATATTTGA 2413173 29 100.0 37 ............................. TGTATGTAAGTTGTATCAAATATTTAGACGGTTTAAA 2413107 29 100.0 37 ............................. AAAGATATAAAAAAATTTAAAGACAAAGCATACTTCA 2413041 29 100.0 39 ............................. TCTTCTTGCTTACTTCAATTTCTTTAACTTTTGGGCTAG 2412973 29 100.0 37 ............................. AATACAGCAGTCTATAATACAAACTTGATTAATAATA 2412907 29 100.0 37 ............................. TGTAAAGATTTTTATTAGTAGAGGATAAGCCAGAACG 2412841 29 100.0 37 ............................. TCTATCAATTCTTCATTTCCTGTTTCTAATAATTTCT 2412775 29 100.0 36 ............................. AAAAAAAGCTTGCAACGTTAATAGAAAGTTTAGAAG 2412710 29 100.0 37 ............................. ACTGGAATAACACAGAATGTTGAAGAAATCTTGAGAA 2412644 29 100.0 35 ............................. TTTTCTTTGCGACACTTTGCGGAGGTTTCACAGAC 2412580 29 100.0 38 ............................. AAAATAATCCGCTTGATCCTAATTCTGTTACAGCTCTT 2412513 29 100.0 37 ............................. GTGCTCGCATTTGGTTTTTTTGAGTATAACGACATGA 2412447 29 100.0 37 ............................. ACTTTCTTTTGTGAGTATATCTCTATTTTATCAAAAA 2412381 29 100.0 35 ............................. GTCAAATTCGGCTTAAGAATTGAGCGCTGGTATGG 2412317 29 100.0 37 ............................. GCTTTAACTTCGATATACTTACCGCCGAGCGTATTGA 2412251 29 100.0 36 ............................. CCATTTATTGTGTTTCGCTGCACAACTGTAAAAGCG 2412186 29 100.0 38 ............................. AAAGCGTTAGGGAAAAAATGAGAGCTTTAGCAGCGTTT 2412119 29 100.0 36 ............................. TCTTTTAACCAATACTTTAAATCTTCAAATTCGACT 2412054 29 100.0 38 ............................. TATGATGAGGTTATACACTTGAGACGCTTTTTTTATAA 2411987 29 100.0 36 ............................. AAGCCGATAACGTATATCTATCTGCTAACAAAATTT 2411922 29 100.0 36 ............................. TTCTTATTGTCGTTTCGTCGTATCCCGTCAGCTCTG 2411857 29 96.6 37 ...................A......... TTGAGAACTGGCTTGTTAATATGCTTGCAGAAGACTT 2411791 29 100.0 39 ............................. TTGACAATATCGGCTACATTTGCACCGTTACCCGAAGTT 2411723 29 100.0 37 ............................. GTTGAATGGTTTGTGCAAGGGAAACAGCGATTGTTAA 2411657 29 100.0 37 ............................. GTACTGGGTTAAAGAAATGCAGGAATTTGGCTTTGAG 2411591 29 100.0 37 ............................. GCGAACAATGGCTCTATCTGGGTTGAACAGTTCTTCG 2411525 29 100.0 37 ............................. TTATTACTTTGTTGATGAGCATAATTGCTACGTTTAT 2411459 29 100.0 31 ............................. TCAAAGATATTTTTTGTCATATCGTCGTTGA 2411399 29 100.0 36 ............................. TTGAATGTAACTTATACTTTCGCTTCTCCCTCCTCC 2411334 29 100.0 37 ............................. ATGCATACTTTGAGCCACAATCGCACAGAGAGGCACT 2411268 29 100.0 37 ............................. TTGAGAATTGATAGTGTGAAAGAAGAAGATATCAAAA 2411202 29 100.0 37 ............................. AAAATAGTTAGCCCTGACTTGAGCATGTGAGCTCAGT 2411136 29 100.0 37 ............................. GTACGGATAGTAGATGACCTTTTCCTCATCAGCAAGG 2411070 29 100.0 38 ............................. AATATTTAAAGTCGAAGAAGCTATCAAAAGCGGGGCAC 2411003 29 100.0 36 ............................. CGCATAACTGTTTTTTCAATAATTGATACATCTTCT 2410938 29 100.0 37 ............................. AATCCATGGGGGTTTATACCGATTGTGCATTTCAAAA 2410872 29 100.0 35 ............................. TTTTGATAGAGGGCAGGTATATAAAATCAGTCAAC 2410808 29 100.0 36 ............................. GAAAGCACATCTTTGGGGAGTACAGGGTATAATGGA 2410743 29 100.0 37 ............................. ACTCAAATCCTCTAATGTTTTGAAGCAGCCCATATGG 2410677 29 100.0 37 ............................. GAAGTTTTGCATTAAAAACCTCACAGCTTCGCTTTTC 2410611 29 100.0 37 ............................. GTTTAATGTGTAACCATAGATTTATAAAAAATGCCTT 2410545 29 100.0 36 ............................. GAATTCAACAAAAACTTGACCCTCAAAAATATCCCA 2410480 29 96.6 36 .......A..................... TGTATTTCAGCCACTGGATGTTTCAAAAGTGTTAAA 2410415 29 100.0 39 ............................. TGTAGAATTTAATTTCTGCCCCTGCTGGCAATGTTGTAG 2410347 29 100.0 37 ............................. TCCTTGCAAACATGGATTTAATCGTGTTCATAACAAG 2410281 29 100.0 38 ............................. TCGGTAGTATGTAGCAGTTTCAATTTCAAGCTCTTCAA 2410214 29 100.0 37 ............................. GTTAGCACATCACCATAGCCGATAGGCAGCTTCCCAG 2410148 29 100.0 36 ............................. TTTACAAGTTTAAAACTGTTAGTCGAAAAATCCCAA 2410083 29 100.0 37 ............................. ACTTATAATTATTCTTTTTGGGTTGACGGGATACAAA 2410017 29 100.0 36 ............................. AAACAAAAGAGCGAGTAGGCACTCGTTTTGAGTTCT 2409952 29 100.0 36 ............................. CATGGAATAATCTGAAGAACACAGCAAATACAGTTT 2409887 29 100.0 38 ............................. TATGTGAGAGAATTTGACCCTAACGCTGAAGAAACAGA 2409820 29 100.0 38 ............................. ATAATAGCAATTGCAATGGCTACATTTTTGGTTATCAA 2409753 29 100.0 37 ............................. CAATAAAAGCCTGTATAAGCTCTTCAAGTTCGCTCAT 2409687 29 100.0 37 ............................. TCAGGGTCGCTTGGGTATCTTAAATATTCACCACCAA 2409621 29 100.0 36 ............................. TATGATAAATGGGCTGAGCGAGGGTTAATAACGCTG 2409556 29 100.0 37 ............................. GCGACAAAAGTGTATTCAACGCTGATAAATCGCTATG 2409490 29 100.0 37 ............................. ACTGCACCCCACAATGGGTTTAAAAGCACAGTTCCAA 2409424 29 100.0 38 ............................. CATGATACTGATGCCTCAAATGATGAGAAGATTGAAAG 2409357 29 100.0 36 ............................. TAAAAACCCCTATCTACGCTAATCTGCACCAACTTA 2409292 29 100.0 37 ............................. GTTTCTCGTAAATCAGCTAAGACAGGTCTTTTGTCTT 2409226 29 100.0 37 ............................. GTGTTTGTATGGTCGTTTCTTGTTTTTCTCCATCTTT 2409160 29 100.0 36 ............................. TTGATACCTGCATGGATTAATGTGGTTAAAAGCGAC 2409095 29 100.0 36 ............................. ATTGGGTAAGCAAAAAGCATCATCTTTGTCCTGCAC 2409030 29 100.0 36 ............................. TTTGCTTGATAAGGCTTGTCTTAAGCTCTGCCAATT 2408965 29 100.0 37 ............................. ACAATTTTTACGTTCGGGTATATTCGTTTCAAATATG 2408899 29 100.0 37 ............................. GAGATACTGCCCATTGCTATCCTTCAAAAGTCTCAAT 2408833 29 100.0 38 ............................. GCTACAACTAGCCCTGCTATTACCGCTACAATTATTTT 2408766 29 100.0 37 ............................. GAGTTTCTAAAGAAAATAAAATCTGAGCTGGTGGAAA 2408700 29 100.0 37 ............................. GCGCTTGCGAATGTGGCCTCGCATTATATCAGCACCT 2408634 29 100.0 37 ............................. AAAGATTTCTAATATCACTTCCAAGTTTTTTGAATTG 2408568 29 100.0 36 ............................. GATTAAAATCTTTACTTATTTTTCTTATGATTGCTG 2408503 29 100.0 39 ............................. ATCTATAAGCAACGACTCTTGAACAACCGCCTTTGAAAG 2408435 29 100.0 36 ............................. TTTTAATGAGCAAATCATAGCTAACCTTATGATTTA 2408370 29 100.0 37 ............................. TCTTTTAAAAGGTTTACAAAGTATCTCCAATTCTTGT 2408304 29 100.0 35 ............................. CATAGTCTTTGTACTTCTCTCTTTCACGCTTTAAG 2408240 29 100.0 37 ............................. GTTAAAAAATCAGAATATGAAGAAAAAATAAAGTCTT 2408174 29 100.0 36 ............................. GTTAATATGCCAGTATCTTTATCAACTTCATAAATT 2408109 29 96.6 35 ...............C............. TTGCAAGCGACAGATGTTGTTACTGTTTCGGGTAA 2408045 29 100.0 37 ............................. TCAATTGTGGGGTAAAGAAAAACAATCGCTCCGGAAT 2407979 29 100.0 35 ............................. ACTCATATAATCATGACTTCTGTAATGCGCTCTAA 2407915 29 100.0 36 ............................. ATGTATTTAACAACTCGCCTTGTTCGCTCACTCATA 2407850 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 249 29 100.0 37 GTTTTATCTGAACTATTAGGGATGTAAAC # Left flank : TTGTTATAGTAACATACGATATCAACGAAAAGAGAGTCAACAAGGTAAGAAAGATTTTAAAAAAATACTTTACATGGGTTCAAAATTCAGTTTTTGAGGGCGAAATTACACTTGGGAAGCTCGAAAAGTGCAAACGAGAACTTTTATCTGTTATAGAAAAAGATGAAGATTCAGTGTATTTTTATGAGATGGAGTACAAACTTGTATGTAACAAAAAGATTTTAGGACAGGAAAAGAACTATGACTCTGTAATAATTTAAAAGTTTTAAAATTTAATTAAGAGCAAATGCCTCTAATTGATGCAGATATAACCATTTTGCAGCGTTTCAAACATTAGTTCGAATAAGTTCTATTGTTTTTGCTGCAAAGTCCAAAAAACTTTTTAACAACTTCTTACAAATCCCAACCACCCCTTCGCTGCATTTTATGTTTGCTGAATGCTTATTAGATTTGTTATAATTATAAACACATACCCATGAGAGAGCATTTACTGTTAGTGG # Right flank : TGTTAATGATAAAATAAAATCATCAAATGACACTAAAAATTCCCCACTTGCCACTTAAAAATAAGCCTTCTGTAGTGTAGAATAGAAAGTATGGAAAAACTCCAGAAGGAGAAGATAACAAGAAAATGTTGGGGGTTGAAATGCACACAACAATCTACACACTTTTCAAACGGGGATACAACAAAAGTCAAATAGCAAGATTGTTAGACATGGATAGAAATGTTAATGATAAAATAAAAATGTACTGAAAGTGGAATATAAGGATGTACAAAATTGTACATTGATATGATATCCTTTCTTAGCCGTTTGCAAAATGAATAGATGTACAAGCCATAAAATAGGAATACAGGAATAAAAGTCAAGAGGCTGCATAGGTAAATTGTGCTATTTACACACAATAACAACATTATCAGCAACATATGTGACTATAAATTTATTACCAAATAATTCAAAAGTCAAAAAAGGCAAAATTATATCAAACCCTTTAAAAAGGGTTTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATTAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 2490715-2490939 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024480.1 Caldicellulosiruptor sp. YA01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2490715 30 100.0 34 .............................. AGGCTTGCAACAAAGTTTTTTAAGCTTATCCTTA 2490779 30 100.0 36 .............................. ATGTACCCATCTTCTGTTTCTGTAATAACCCTACAA 2490845 30 100.0 35 .............................. TCAGTTGTCCCACTCACAAAATATGCACTAACCTG 2490910 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 35 GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Left flank : AAATAACATTTTGAAATTTTCATTGAGCAAAACTAAGGTAAAACTCTACGAAGCAAAAACCATACTTTACAAGAAAGGGGCTATCATATTATCTTTGTAAATAGCCCCTTTTTTAATACCATCATCTTTATTTGGTCTATTACAAAGATCATTCTATAAGCGCTGTTACACCATTTCAGTCCATTTTCTGAGCACTCTAAAACTATATTCAAAAAACAATTCAGTCAATTCTTATTTACAAGCAATGATTTACTATTTTGTTATTACATTTATTACCTTTTAAAGCCATGTATTTAGATGAACCTGCGAAATAAAGCTTTTGTATTTACCAATTGTTGTCGACCTGTAATCCCCCAAAAACCCCTGGGGGTCGACAGCAAAAGGTCGTTTTTTTGGCATGTGTTGACCTGTAAGCTTTTGTGGTGTATTATAGAAACAACCTACTGCAGCTTGAAAACTTAACCATTTATTCCTTGCAAGACTCTGAGGACTCTCTACGT # Right flank : CATACTATCCCACGCTTTTTTGCGCTTTCTCGAATGGTCTGCCAAACCCTAGTCAACCAATCGTGGAAGCCCAGGAAGTTTGCCTTCCACGCCGCTATAGCCCAAGCAATTATGCCTGTAATACCAAGAATAATCCAACCCACGGGACCAAGGCCAATCAACCAAGCCGCTGCCATGCGAGCTACCGACATGAAGTTTTCTACACTGCCCATCATGATTACAAATCAATTTCTTCGAGTGTGTTTTTAACTATTTCCCTTAACTTTTTTTCGAAAGTTCTTGTACTTTTAGCCCAAACAAAAGAATACTTGTTCGCATTAGCTTCAACTTTTGTTTCATCGAGATAATAAAAGTCGAAGTTTACATACCCTAACTCTAGAAGAAGTTTAACTACCTCGGCAAAGATATTTTCAATTGCCTCTCCCAAAATTTCTTTTCTAAATCTGTTGATAGTCCTGAAATCAGGAGCTTGATATTTTGAGAGCCACATAAAAGTAATG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 4 2495395-2497143 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024480.1 Caldicellulosiruptor sp. YA01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2495395 30 100.0 36 .............................. TTTTTTATATGAGCACTTCAACAATCCTTCTACTTT 2495461 30 100.0 37 .............................. TGATGTAGTGCTGATTGTACAGTTTGATAGGATGATT 2495528 30 100.0 37 .............................. TGAAAAAAATTTTATGTATATTGAGAATAGTAATTTG 2495595 30 100.0 34 .............................. GGTCAAACTTTCTTGTTATCTTGTCAATCGTGTA 2495659 30 96.7 35 A............................. TTCATCGTTGTAATTCAGCCCTGTTAGTTCACACA 2495724 30 96.7 35 A............................. TCAAATACATGAATTTTGCCTTTTTTAACTTGTTC 2495789 30 96.7 36 A............................. CCATCCAGAATAACTATATTATTCTGGATGGTAATA 2495855 30 96.7 36 A............................. TCCTTTTTTGATAATCTTTACCCTCCAAAACGACTA 2495921 30 100.0 35 .............................. TTTCGTTTAACAGCTTTATAATGAGCCAATTTTGT 2495986 30 100.0 38 .............................. TAAATCCTGCATTATAAAGCTTTTCTATAAGTTCAATA 2496054 30 100.0 34 .............................. TTGAATAAATCGTAATTTGTAACATAGCCTTTTT 2496118 30 100.0 38 .............................. AAATGCTTTCTATTCCACGGGCATATTCTTGAATTACA 2496186 30 100.0 37 .............................. TCTATTTCCTTTTTATCACCGCGCACATACCAATTGA 2496253 30 100.0 36 .............................. TCTTTTCTCATTATTTTTCAACCCTCCATTTCTTTT 2496319 30 100.0 35 .............................. AAGTTTTTAGTTATAGTGGCAATGCTTTTAGAGGA 2496384 30 100.0 37 .............................. ATAACCTGTGCATTTTGATCAGCAGGATTGTTCACAA 2496451 30 100.0 37 .............................. ACACTACTTAGAGACATGCGCAGTATAGAGTTTTATT 2496518 30 100.0 38 .............................. TCAAGACAGTATTATATTAACACAAGCGAAGCAATAAA 2496586 30 100.0 37 .............................. TAACTCTGCCATCAGCTGTTTTAAAAGCACCTTCTCT 2496653 30 100.0 35 .............................. AATTTACATCCGCACTGCAACCGCACAGCACCTGC 2496718 30 100.0 36 .............................. TCAATCACTCTGTCAGTCTTCTCTTTAGCTTCATTA 2496784 30 100.0 36 .............................. CATCTGCTGCTGCCATGAGTTTTGCTGCCATTTCCC 2496850 30 100.0 34 .............................. TCCTCCCAATTGGCAGGGCCTGGTAGACATCCTA 2496914 30 100.0 36 .............................. TGAAAAGCTGAACAGGAATATCAATCGTGCGTACTA 2496980 30 96.7 35 A............................. AGGCTCAGCTCTGTCAATACTCCCATGTGAAAAGC 2497045 30 96.7 39 A............................. AAAGTAATTCCCGCTGCCTTCGGATATCCACCACCACCA 2497114 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 27 30 99.3 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : GTCGAATTCAAAAAACGAAGACAAACAGGTGAGTGAAATTCTTTTGCAACCCTCATAATATCATACACAAGTAAATGCACTTTTTTCACTCTCCTTCACAGACTGGAAATACAAAAGACATAGGCAATTTTAATATGAGATTTTGATAACTTTAAGGTCAAAAATTATGCGAATTTCATTTATGAACATGAAAATTTGGAACTTTCATTATATTTGATAAATAATATTATTTGTATTTCAGTTTATATTTTCTTTTTTTGTTATAATGTTATTTATGATTTTTACTTTTTGTATTTTCATTTTTCATAACTTTTTTACTTTTGCATTTACCAATTGCTGTCGACCTGTAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGAAGTTTTTGACATGTGTTGACTTGTAAGCTTTTGTGGTGTATAATAGAAATAACCTACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTGAGATTCCCCAAGCCATCTACGG # Right flank : CACTGAAGCGGAAAGAGAGAAAATCAAGGATATTTGGAGTGATGAAGAATGATGTATGATACTTATTCTTCGCTAAAAGAGTTTATTGATGACTTAAAAGCGGTTGGTGAAATAGAGTTTGAATATAATGACAAGCATTATTCGCTTTTGTATTATGATAAAATCTATATTTGTGAGTATAACAAACCGGAAACTGAGGAAGAGTATGACACCATTGAGGAGTTTTTAAATAACTACAAGATTGACGGAACATCAATTAAAGACTTGGCGACAAGAATCAAAGTGATATTCCACTAACCAACCACCCAACCCAACAGTGTTGAGGTGGTATTTTTATGTCTTCTTGTAAGGGAGTGAGTGTCATGGCTGAGAAGGTTAGCAACAGAGTATGGGGCGAAATCGTTTGTAGCCTTACCGTTGGAGATTGAAGGTGGTAGGAGATTTTGTAGACTCCTCGTTTGGGATTGTAATAAGGTGAATTTTAACCTCTATGTCGGAAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : ATTTGTAGCCTCCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 5 2507053-2511619 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024480.1 Caldicellulosiruptor sp. YA01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2507053 30 100.0 35 .............................. CAAAACACGCAAGCAGAAAAAAGCTCCAGCAGACG 2507118 30 100.0 36 .............................. CCGTATTTGCAAACCGGCCGGTAAGAAACCAAAACC 2507184 30 100.0 36 .............................. CAAAGTGGGGGCTATCTGATACGTGCAAAAAGCCCG 2507250 30 100.0 36 .............................. GGAAATTTTTTTCATCTCTAACTTCTATCTTATTCA 2507316 30 100.0 37 .............................. TGGGATTTAACGGAGCGGAGCTATAACTCCGCTCCGT 2507383 30 100.0 36 .............................. AATATATAGCCTGCCCTGCAAAAACATCGCCACCCG 2507449 30 100.0 36 .............................. TAACCGTGGCGGATAGCATCCACCACGGTTCGAATG 2507515 30 100.0 36 .............................. TTCAAACATTCATACAGCTTGTCAGCGCTGCATGGA 2507581 30 100.0 34 .............................. ATAGACTCTGCTTCTGGAGAAGCAGAGTTTGTCG 2507645 30 100.0 35 .............................. TTCTTTATAGAACTATTATAGCATAATTGGCAACA 2507710 30 100.0 35 .............................. TTTCGGCTCTTTGTCAAGAGTTGGGGTGGGTATTC 2507775 30 100.0 35 .............................. ATTTCTAACTTCTATCCATTTCGTCTTATTCATTT 2507840 30 100.0 35 .............................. TCTTCATAAATAGTAGGGCCTGGTAGACATCCTAC 2507905 30 100.0 35 .............................. TTTTATTATTTAAAATTTTGGCAACACAATCAAAA 2507970 30 100.0 35 .............................. TCCTTCTATAACTTTTCTTACTTTTTCTTCTTTTT 2508035 30 100.0 40 .............................. CATTGTCAATAATAATGCTTTCATCTTTGTAACATAAAAC 2508105 30 100.0 38 .............................. TACCTCCCTTATAAAATTTTTAGCTTCTTGGACAAATT 2508173 30 100.0 36 .............................. GAAGACAATACCATACCAAAGTAAATGAATATAAAG 2508239 30 100.0 37 .............................. TGAAATTATCTGTTATTGGCTTACCACAAACAGGACA 2508306 30 100.0 37 .............................. ATAACTTAAAGAGAGATGTTTATAATAGAATGATTGC 2508373 30 100.0 35 .............................. ACTGGTGGAGTTGATATTGTAGGAGCTCTTACAAG 2508438 30 100.0 35 .............................. TGTAAATGGGAATAAAATAGGAGAATATGCTGGGA 2508503 30 100.0 35 .............................. ATTGCATTGTGTCGTAATATCTAAAGTAGCGTTTG 2508568 30 100.0 36 .............................. GCTGTTACAACATGTTTTAAATGCTCATAAATGTTT 2508634 30 100.0 34 .............................. GCATATTTTCTGTTCTTCATATTAGGTGCAAGTT 2508698 30 100.0 38 .............................. AAAAAAATAAAAATACATCCCCCTTATTATGCACTATC 2508766 30 100.0 37 .............................. TCGGTAAAACCATTCAGTTGGTCTGCCTTTTTGTTGC 2508833 30 100.0 36 .............................. TTTTTTTGGCTTTTCTTATTTCTCTAAGCTTGTTCA 2508899 30 100.0 36 .............................. AAGGTCTAACGAATCCATACCTATCAAACTCTTTCG 2508965 30 100.0 36 .............................. TTCAAACATTCATACAGCTTGTCAGCGCTGCATGGA 2509031 30 100.0 35 .............................. AAGAATCACTTCGAAGTCTACAACAGCTACTGAGC 2509096 30 96.7 34 ...........A.................. AACCCCAAAGGGTAGGCTACGCAGGGGCTAAAAG 2509160 30 100.0 36 .............................. ACAATTTGGATACTAACAATTCGGTCGCTGATGTTG 2509226 30 100.0 36 .............................. GTTAATGAAATTAAGGAGAGGCTTATATATGAATTA 2509292 30 100.0 36 .............................. TTTTTTTAATTAAATTTCTCTCTAACATTTTTTACC 2509358 30 100.0 37 .............................. TGCTAATCGATATAATGTTGATTTTGAAGAATTATTG 2509425 30 100.0 36 .............................. TCAAATACATGAATTTTGCCTTTTTTAACTTGTTCA 2509491 30 100.0 36 .............................. TAAATTTGCAAGCACAATTCTGTAAATGCATAAATA 2509557 30 100.0 36 .............................. TAGTCCTTCTCACAACATTGAGAAGGACTGCTTTCG 2509623 30 100.0 36 .............................. AGATTAGCCAGGGCAATAAAAACACAATTGTTGATA 2509689 30 100.0 35 .............................. TCAAAGATGGTCAAGTTATTGAAACTTGGGAATTA 2509754 30 100.0 37 .............................. CTGTGCGCTGCGATCCAGGTAGGCACCTGAACCGACG 2509821 30 100.0 35 .............................. AATATTTTATGCCGTCTTTTCAATTTTGGCGATAC 2509886 30 100.0 37 .............................. CCAAACCTCGATCCACAACTGTGGTTCGAGAAAATAA 2509953 30 100.0 35 .............................. AAACTAACAATCCATCCACTATAAAATCAACCATA 2510018 30 100.0 37 .............................. ATATTGTTCCAGTCTTCTTTGAACATCATAACACTCC 2510085 30 100.0 34 .............................. ATAAATTCAAAATAAAATGTATTGTTTCTTATAA 2510149 30 100.0 34 .............................. ATTTTTTTAAAAAAATACTTGACAAAATAAAAAA 2510213 30 100.0 37 .............................. CTATATAGCAAAGACAAGCCGTACAGACCAATTGCCA 2510280 30 100.0 36 .............................. ACAATCCTCTCATTGCATTTCCACTGTAAGTAAAGA 2510346 30 100.0 36 .............................. CCAAGCACGGTTAACGCTGCAAACTTCATAGTCATA 2510412 30 100.0 36 .............................. GGCCACAAGAAATACATCTGCATATTGGAACGTTAG 2510478 30 100.0 36 .............................. CAATAACAACAGCTAATGAATTTGAAGGAACATCAG 2510544 30 100.0 34 .............................. TCAAACACCTAAGATTAATTGGGCAGCGGGCAAT 2510608 30 100.0 34 .............................. TCAAACACCTAAGATTAATTGGGCAGCGGGCAAT 2510672 30 100.0 35 .............................. GGAACTTATAGATGGTTGCACAATGACAAAGATTT 2510737 30 100.0 35 .............................. ACTTCTATCCACTTCATCTTTTAAACCTCCTTTTT 2510802 30 100.0 36 .............................. TGTTTTATATTGCTACAAGAAAAACAAACATAATTA 2510868 30 100.0 35 .............................. GAAGCAAAATTTTTATTGCTTTTTCTATCATTTCG 2510933 30 100.0 36 .............................. TATTTTTCCATGAATCTACAATTTAGTATCAATTGG 2510999 30 100.0 37 .............................. TAATCCTTAACATCTATAAGCCTACCAGTAACAATAC 2511066 30 100.0 34 .............................. TATGAAAAGGGAGGTTTTGTTGTTTAAACTGTAA 2511130 30 100.0 34 .............................. CAAGAGAGGCTTTGGTTACAGGTACTAATGTTCA 2511194 30 100.0 35 .............................. TGAAATCAAACAGGCTGCTTTAGAGGTTGATAAAG 2511259 30 100.0 36 .............................. TTAAAACAACAATATAACCAGAACAATAAAAAATTG 2511325 30 100.0 36 .............................. TTTCTTCAAGCTTAGGCTTTGCGTATTCGGCAGCCT 2511391 30 96.7 35 .............................T CCGGTACTATCAATTAGAATAATAGCACCGGTAGC 2511456 30 96.7 35 .............................A TTTGCTCATCACCCATATTTGCATTTGCTTTGATA 2511521 30 93.3 39 ...........C.........A........ TTGATATCAACAAGTGCTTGAATTCTGTTGAAACCATTG 2511590 30 83.3 0 ...........G.......AA....A...A | ========== ====== ====== ====== ============================== ======================================== ================== 70 30 99.5 36 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : TAAATAGGCATCATTTCCAGATGCATCACCAATTAGAACATCACCAATCTCAACCATTTCCTCTATCAATAGCCTCTCACCTCGCTTTTATGTTAATTATACCAATTTTATTTTCAAGATACAACCAAATTTTGAACTTGCAATCCTCGTTACTTAGTACACTTTTTAATTTTACATATCATCATTATAATTTTTAAGGTCAAATTTTATGCGAAGTTAATTAGATATATATGTCATTTTTTTCATTTTATATTATTTTTGTTTGTGCAAAAATTGACATTTTTAATTATGTACTTTGTGATTTGCGACGTATTATGACTTTGCATTTACCAATTGCTGTCGACCTGTAATCCCCCCAAAAACCCCCGGGGATCGACAGCAAAAGGTAATTTCTGGTATGTGTTGACTTTCAAGAGCTTGTGGAGTATAATAGAAATAACCTACAGCAGCTTGAAAACTTAACCATTTGTTCCTTGTAAGATTTCTCAAGCCATCTACGG # Right flank : AAATGAAACTGTGAGACCGCTTTTGTGGTATAATTAAATTGGACAAAAAATAAAACAAACTCAACATCTTTGGCTACAGAGTGTAGAATTTTATTCTGAAAAATTCATAAGTCGGAGTGAAAGTGCCTTGAGCTCTGAAATTCCACCAATGGAGCATGATACCACTTTTAAGTTCTTGCTCAAAGACAAAAAAGAGCTACTTGTGCTTATAAAAGAGATTCTCAGATACAGCTGGGCAGATGAAATAGATGAGGAGTCTATAGAATTTGATGACAGCGAATTTGTAACACAGCACCTATCCCAGCTCAGAGCCGATATTGTTGCAAAAGCAAAGCTAAAAGGAAGAGAAGTATATTTTTATATCCTGATAGAGAACCAGTCGACAGTGAAAAGGGATATGGCACAGAAGATACTAAAGTACATGGTAAGCCTGTGGTGGAATGAACTTAGCAAAGGGGCAGAGAATCTTCCGCCTGTCATATCCATAGTTGTGTACAACG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //