Array 1 111866-114261 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTDX01000001.1 Campylobacter fetus strain 12S01208-4 NODE_1_length_745993_cov_103.54_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 111866 30 100.0 35 .............................. GCGATAATCTAAAGACAATTAAGGATATGGGTATT 111931 30 100.0 36 .............................. CTTGATGAGTACACGGCTATAATGGAAAATGGAAAT 111997 30 100.0 37 .............................. CAGCTCAAGACTCATTGCTTTACGCCTTGTTTTCATA 112064 30 100.0 35 .............................. TAGTAAAATATTTCCGCAGCATTTATTTTTTTAGC 112129 30 100.0 35 .............................. TAGTAAAATATTTCCGCAGCATTTATTTTTTTAGC 112194 30 100.0 36 .............................. TTTGAAATCTCCTAAAATTTTGTATCCGTACTCTTC 112260 30 100.0 35 .............................. CGGCTACCTTGTTTTAAATCAATTATCATTTTTCA 112325 30 100.0 35 .............................. GGTGAAATAGGATTATCAACATAATAAAAAGAACC 112390 30 100.0 35 .............................. TCAAATGCTACTTCTATTATTTTTGAGCTGTGTGG 112455 30 100.0 35 .............................. CTATAAAGCTCATGGAACAAACTTCGCTCTTCAAA 112520 30 100.0 36 .............................. GTAACATACATAAAATCAGCTATTTTATTTAAGCTA 112586 30 100.0 36 .............................. TCAAGGACAGCTTGTTTCTAATACTTATGGCGGTTC 112652 30 100.0 35 .............................. TTTAGAAATTTAATGTATAATTGTATGAAAATAGG 112717 30 100.0 36 .............................. GAACTTACAGAGCCAAAAATTGAAGACAATATTTTA 112783 30 100.0 35 .............................. TTCATCAACAGAAGAAGAAGCAGAGCGAGAAGCAA 112848 30 100.0 35 .............................. GGTGTAATAGATTTTACAAAAATAGTAAATGCGAT 112913 30 100.0 36 .............................. AAACTAAAAAATGGCTCTATAATCCCATTTAAGGAG 112979 30 100.0 36 .............................. AGATAATGCAGTTGTTTTTAAAAGTACTGACAAGAT 113045 30 100.0 37 .............................. TAAACTGTTCTGTAAGCCCTGTTATGTTTCCACTACT 113112 30 100.0 37 .............................. CACTTATAAAATCCTAAATTAGGCTTATCCGCATTTG 113179 30 100.0 36 .............................. TAATAAATATCTAACATTAGCTATCTAAATCTTTAA 113245 30 100.0 35 .............................. AGTTTAGCTAGAAGTATAGGGGTAAGCTCCGCAGC 113310 30 100.0 36 .............................. TGGCAAGCCAAGGCAAAATAACTGCCTATAACGTGT 113376 30 100.0 36 .............................. TATAGCCGTGACCCGTAAATTTAGTGGTGCAAACGG 113442 30 100.0 36 .............................. TTAAAAGTTCTAAATATAAAATCGTGTGCGTATTCT 113508 30 100.0 39 .............................. TAGATATATTTGCATCAGCTATATTTATAAAGCCTAGAA 113577 30 100.0 35 .............................. CTTTAACACATCAGGCAAGTTTGGCAAGGACTTAT 113642 30 100.0 37 .............................. AGATTCTTTAAATAGTGCTATACTTTCTTTGCAGACA 113709 30 100.0 35 .............................. TTTTTTCTCCTTAATCTATCTTATATCCACCATTT 113774 30 100.0 35 .............................. ATACAACTCTAACACCTTATGCTAAATTTGTCCAT 113839 30 100.0 35 .............................. TGCTTATGTTGAAAATGAGTTAATACAACGTGGCT 113904 30 100.0 35 .............................. CTAAAAGGGAGCGCAACCGTGTACTTTAGGAATTT 113969 30 100.0 36 .............................. TCATTTTTATCAAAAACCTTGTTATCCTTTGTATAA 114035 30 100.0 35 .............................. CCAGATATTAATATTTCAGCTCCGGAAGAGCTTGA 114100 30 100.0 36 .............................. ATTGCTAGAAAACGGGCAAATAAGTCGCAACAAATG 114166 30 100.0 36 .............................. AAAAAATCGAACTAGAAAAAGCTACTGTTATAGAAA 114232 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 37 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AATGGTGAAATTGGTAGACACGCTAGACTCAAAATCTGGTACGGGAAACCGTGTGTCGGTTCGAGTCCGACTTTGGGCACCAGAGGGTTTTGTGGCGACTTCGTATTTTCTCATATTTTCCTTACATTTTTCATATTTCTATTTCTCCCATTTGCAACCTAAATTCAAATAATTAAATTTTAATTTATAGCAATAATAATATTTATATACCACTAATCACAAATTTATATTTTATATTATATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTTTTTTATTATTTATGGCTATATTATATCTACAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTCAATTGCTTTTTTAAATTTGCTTAGATGATGAGTTTATTATA # Right flank : CAGAGCAAACATGGCAGATACTTTAAAAGAGAAGTTAAAAAGGGGTATTATCTGCAAATACTAGCTACTTTGAGGGTGTGAGCGACCACATTATAAGCCAAATGCAAAATATCGCAAGAGTAAATCAAGCTAGTAAATATGGCGTTACACACTACAAAGTAGTAGCAAGGATAGATAGCCGTACAAGTGATATATGTAGAAGCATGAATGGACGTATAATCCCTGCTAGCCATATAGAACGCCAAAGTAACAATATCCAAAACGCTAAAAGTATAAGCGAGAAAAAAGGTGCTGCTATTTGGAGAAATGAGCCGTTTTTAGGTAAAATGCTTCCAAGTAACTTTGGGCTTCCACCTTATCATTTTAGATGCAGGACTGAGCTTGTGCCTGTGTGGATTGATAGCGAGGAGATAGATGGTGTAACTATGACAAACACAAGCTCACTAAATAAAGATGAAGTAGTAAAGCATATTGATAAGACTGGAGTTGAGCGAGTGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 124661-127249 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTDX01000001.1 Campylobacter fetus strain 12S01208-4 NODE_1_length_745993_cov_103.54_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 124661 30 100.0 36 .............................. AAATTTATGAAACTTTTATTAATGTATTTTAAGACA 124727 30 100.0 35 .............................. TTACATAAATCAGAAACTAAGCCAATGCTAAAAAA 124792 30 100.0 35 .............................. CAAGGGCGTTTTTAATACTTCCAGCCCCTACATTT 124857 30 100.0 37 .............................. TTTTAATTTTTAGTGCTTTTTTTATAGGTGTAATTTA 124924 30 100.0 36 .............................. AAACTTATTTACATTCTGGGCGGTGGAATCCAAAAT 124990 30 100.0 35 .............................. CGTTTTTTAGAATTGCGGCTGCTCTTGCTGTGGTT 125055 30 100.0 36 .............................. ATGACGATAAAGATTGGTTTGAGCAAGCGGATTATT 125121 30 100.0 35 .............................. TTTTTAACAATTACATTAAACGGCTGTTTCCGAGA 125186 30 100.0 36 .............................. AACGCCTACAAATTTATATAAAGAAGCAACAAATGA 125252 30 100.0 36 .............................. AAGCTAGAAATCTTTTTAAATACAGTCTCTTTACAG 125318 30 100.0 36 .............................. ATGGGCAATTTTAAAGTATTTATAGAATAAGTACCG 125384 30 100.0 36 .............................. CGCGATAAAAGAAAAAAATCCGCATTGGGACATACT 125450 30 100.0 35 .............................. TAAACAGCTAAATTTACTTTATAATTATTCAGAGA 125515 30 100.0 36 .............................. AACTACAAAAAACTAGAGTTAAATGGATTTGAGAGT 125581 30 100.0 36 .............................. AAGCTTCGATGCAATCTCCGCTATCCAGCCTATCAG 125647 30 100.0 35 .............................. TCTTTATATCCGCCAATATAAACACCTTGATCTTG 125712 30 100.0 36 .............................. TCTTAAACAAGCTGGATTAAAGGCGACTAACTATAA 125778 30 100.0 35 .............................. TTGACTTGTTCTAGTGTTAACAGTTGCCTTTTTGG 125843 30 100.0 36 .............................. CCTCCATGTTGGGTAGGTATTGTTTTACCCAGTATG 125909 30 100.0 36 .............................. CGTTTATGATACTGAAGAGATATGTGAGAACGCTAA 125975 30 100.0 36 .............................. TCTTATAATCGGTTATAATTTCACAAAATAAACGAA 126041 30 100.0 35 .............................. AGACGCAATAATCGAAATGGCTTATCAGCTTGGCA 126106 30 100.0 35 .............................. ACTATTAACAGTCCTGTAAAACCTGTAAAATTAGC 126171 30 100.0 35 .............................. CTAAAAGGGAGCGCAACCGTGTACTTTAGGAATTT 126236 30 100.0 36 .............................. AGCTAAAGCAGATAAAGCGTTTAATGCTAAAGGAAA 126302 30 100.0 36 .............................. GTATGTAGTTTATGTAGTTACGAAAGATTTAGATAA 126368 30 100.0 36 .............................. AAAGTGTAAAAGACTACGCAGATATGTCCGCTGCAA 126434 30 100.0 35 .............................. ATGAATTTTTCTCCTGCTGACATAATTGCTATAAG 126499 30 100.0 36 .............................. ACGTTTTGGAAGCTTACAACGCCACTAAAAGAATTT 126565 30 100.0 36 .............................. CGGACAATGCGGTAGTAGCAATGGCAAAAAATATCA 126631 30 100.0 34 .............................. TACCAAAAGCTTACTAGCTACGTAACTAGATATT 126695 30 100.0 36 .............................. TGTGGAATACAAAGAAGAAATCTTCCTTTAGGGTTA 126761 30 100.0 35 .............................. TCTGCGGAGTTTAAAGCCCTTAAAGTCTGGACTCC 126826 30 100.0 35 .............................. TAAACAGCTAAATTTACTTTATAATTATTCAGAGA 126891 30 100.0 35 .............................. CCACCATAATACCAGGAAAAACTGCAAAAACAGCG 126956 30 96.7 36 .....................C........ CCTTTTAGAGGATGTTCTTTATATGTATTTGGTAAT 127022 30 100.0 36 .............................. CAGGGTATTTTTTTAAATACGCTTTATAAACTGCGT 127088 30 100.0 36 .............................. CTCACGATGAGTTCATCTCTAAAGAAAAATATATCT 127154 30 96.7 36 ......................A....... TTATCTCTACGCCACACTAGGAGTTTTAAAATATTT 127220 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ===================================== ================== 40 30 99.8 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : TCCTGCAAATTTTATTAAATTTAAATCCGAGATAGAAAAATTAATTGACAAAAATATCGATGTTATTACCGTTTTAAGGCTTATAAGAAAAGATGACGTAGATGAGATAAGTATAGGCGGTCTTGATTTTGTCAAAAATGAGATGTTTTTATAATCCAACTCAATTTTAATGTTAATTTTAAGTTTATATTAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATATTATATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTTTTTTATTATTTATGGCTATATTATATCTACAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTCAATTGCTTTTTTAAATTTGCTTAGATGATGATTTTATTATA # Right flank : TATGCTCGCTACTGCTAGTTTAAAATATATAATTATTAAATTTTGAATAGCAGTTTTGCAGCATCATTTTATGTTTTTGAGTATTTTTATAAATTTGAAAGAGCTGTTATAAGCAGTAATTCTAAAACAAACGGCTCAAGATGCTAATTAACTAAAATTATATTTTTTATATCTTTGGTCTGATATAAAATATTATATAAATTACTTGCAGTAACAATAAAGCAATTTTTAATTCCAAATAATAGAAATTTTTAGCTAAACGTAATGAAATTTAGCTATCATTATACGAAAGATTTTTACAAAGGTGAGTTGATGATACATAAGATTCTAATAGCCAACCGTGGCGAGATCGCTGTGCGTATAGTTAGGGCATGTAAAGATTTGCATATTAAAAATGTTGCGATTTATACAGAACCAGATCGTGAGTGCTTGCATGTAAAAGTGGCCGATGAAGCATATCAGATAGGCAAAGATCCTATAAAAGGTTATCTGGATTCTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //