Array 1 222793-221239 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAYO01000025.1 Streptococcus agalactiae strain NNA004 123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 222792 36 100.0 30 .................................... GAACTATTGCCGTTTTGATTAGTTTGTTGT 222726 36 100.0 30 .................................... ACATGCCACCTTATTGTATGGTGTATCGTT 222660 36 100.0 30 .................................... ATTTACAGGATTACCAAGAAGCACAACTTT 222594 36 100.0 30 .................................... TTATTTTAATATGTACTTAACAGATTATTC 222528 36 100.0 30 .................................... AACTTTATACAATTGTCTTGGAAACCTTTG 222462 36 100.0 30 .................................... CTTCGTAAAGCTATCCGTAGAGCTCGTAGA 222396 36 100.0 30 .................................... AGACATTTACCTATTACTTTAGAAAGTCAT 222330 36 100.0 30 .................................... TAGTGATTTCCGTATTATCGGAAAAGTTGT 222264 36 100.0 30 .................................... TGATACCTTTATTTTCATACACAATCCACT 222198 36 100.0 30 .................................... GAAGTATACTACGGTTAGAGATTGGCTCAA 222132 36 100.0 30 .................................... GAAACTTCGATTAGTTTGCGTACTCGCTCA 222066 36 100.0 30 .................................... ATTAGTCCTGTTGTTATGATGGATGATTAT 222000 36 100.0 30 .................................... ACAAACCTCTAATGGATAATATAGAACAAA 221934 36 100.0 30 .................................... ACACAATTAAACATAAAGAAGTGCTTATTT 221868 36 100.0 30 .................................... TCAGGAGATTGTGTGTACTCACGAATTTTT 221802 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 221736 36 100.0 30 .................................... AACCTTGATAGGCGTACTGTATGGATTCCA 221670 36 100.0 30 .................................... CTACTGTATTATCTGAAATAGTATCGTTTT 221604 36 100.0 30 .................................... TCTCGGGAAATGCAACTGATGCTGCAATCA 221538 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 221472 36 100.0 30 .................................... GCTAGCATGGCACAAAAATAGCGTTGGAAT 221406 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 221340 36 100.0 30 .................................... AGAGGGGAAAATATCAATGCCGAATGCTGA 221274 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : GATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //