Array 1 362022-366565 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019547.1 Candidatus Nitrotoga sp. AM1P chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 362022 37 100.0 35 ..................................... AACTCTTAATCCTCCTGGTCAAAGGGCGACCATGT 362094 37 100.0 34 ..................................... TAACTTTTGGCTGTATGGGACGTTTTTCATTTCA 362165 37 100.0 34 ..................................... ATGTGTTTTATTTTGGTTGGCATGTTTGCGGGGG 362236 37 100.0 35 ..................................... GCATCGAGCATGTTTCCAAGTTTGATGACAAATTC 362308 37 100.0 35 ..................................... AAAAATAACCGTTGCTGATTTGCAAAACCAGCATG 362380 37 100.0 34 ..................................... ATATTCAATATGTCACCTACCCCGGCGAACGCCG 362451 37 100.0 34 ..................................... ATATGGTGAATCCGAGGAATCCAAGAGCGGCGGA 362522 37 100.0 34 ..................................... AATAATCAATTGCCGATCTTTATCAGCCCATGAA 362593 37 100.0 34 ..................................... ATTATTTGCCGACCATCACGCCAAAACCGAACAT 362664 37 100.0 36 ..................................... CTAAATGGTGCTGATACGCTCACGGGAAAGCCTGAC 362737 37 100.0 34 ..................................... AACTCATCATAAACCGGCGCGGTATAGGCCAGCC 362808 37 100.0 35 ..................................... CTAAATGGTGCTGATACGCTCACGGGAAAGCCTGA 362880 37 100.0 36 ..................................... GTCAGATTGCACGTGATGGCTATTTTCAGACGTTCG 362953 37 100.0 34 ..................................... ATTTTTCAACTCTTGAATGCAACATTGACATTGA 363024 37 100.0 34 ..................................... CAGACACAAGTCTACGATCTTTTCATGGCTAATG 363095 37 100.0 34 ..................................... ATATGTAAATGTACGCCAATCTTTTTCGAGCCTG 363166 37 100.0 37 ..................................... GCATTAGAAATACTTGTCAGTGCAGAGTGAGCAAAGT 363240 37 100.0 35 ..................................... AGAGGCTCGATCGGCGGCAATTCTGGCAGCTTCGC 363312 37 100.0 35 ..................................... AATAATGGTGAGGGATGGGGCTCGCATCAAATTTG 363384 37 100.0 34 ..................................... AATTGTGTAGGACTTGCCCATCATAGAAAACTCA 363455 37 100.0 33 ..................................... ATAATTCAATAAATAATGGTAAAAAGCAGCTAT 363525 37 100.0 34 ..................................... AGCAAAAAGATGAGTTTATAGCAGCGATGAAGTT 363596 37 100.0 36 ..................................... AGAAGAGGCTCTGGCGCTCGTAAGTAGCGCAACATC 363669 37 97.3 34 ............T........................ AGCAAGGATACATTGGCCAGATATAGCGAGCTGC 363740 37 100.0 35 ..................................... AATCGCTCGCGCTGTGCGTCGCAATCCGGCCAAAT 363812 37 100.0 33 ..................................... GAATTGTGCGCGCGCCTCAGTCTCGAATGCCTT 363882 37 100.0 35 ..................................... CTCAACATGGTGGAGCAGTAACGTGAGTAAGCGCA 363954 37 100.0 34 ..................................... AATTCCGGTTGCACCATTGAATCCGGTACGCCAC 364025 37 100.0 36 ..................................... AGCTTTACTGGGATCATTAACGACCACGGCGAAACA 364098 37 100.0 36 ..................................... AGCTTTACTGGGATCATTAACGACCACGGCGAAACA 364171 37 100.0 34 ..................................... ATTTACTGGAGGGGGATGCAATTTGCACGCCTTC 364242 37 100.0 34 ..................................... ATAGTGACCGTTGCCGGGAATGCGAGCACGTTCT 364313 37 100.0 34 ..................................... AATAATGAATCAAAATATCCCAGCGAGTTTTTCG 364384 37 100.0 35 ..................................... AGACTGGCACCTTCATCCATCGTTTTCTTGAGCCG 364456 37 100.0 35 ..................................... ATTGGTGGTACCAATGGCCTGGCTCCGACCTATGC 364528 37 100.0 34 ..................................... AATTCCGGTTGCACCATTGAATCCGGTACGCCAC 364599 37 100.0 34 ..................................... TTCCTCATCGTAAAATGATTGTGGTGTGAAATAT 364670 37 100.0 33 ..................................... ATAACTGGGTAAAAAACTATTTTATTGACCCTG 364740 37 100.0 34 ..................................... ATCAAATGGCTGGCAGGAATATCGTCTGGACTGG 364811 37 100.0 36 ..................................... GATTATCAACGCGACCAGATTCTGACCGGAAACGAT 364884 37 100.0 36 ..................................... CTCTATCGTTGCTCCGCGCCCAGCCTCTGAGGCATG 364957 37 100.0 35 ..................................... ACTTTCAGGGTGGAGTCATCACAAGGCTTGCAAGC 365029 37 100.0 35 ..................................... ATCATGTCAGCAAATAACTCTTTTGCCGCCCAATT 365101 37 100.0 33 ..................................... TCGGATATTCTGGATTGTCTGCGTGAGGCTAAA 365171 37 100.0 34 ..................................... GCCTACACCGGAAAATATAAGCGTAGGGCTGGCG 365242 37 100.0 33 ..................................... GTCAGATTGGGCGGCCGAACATCCTGACATTGC 365312 37 100.0 34 ..................................... GCCTACACCGGAAAATATAAGCGTAGGGCTGGCG 365383 37 100.0 33 ..................................... GTCAGATTGGGCGGCCGAACATCCTGACATTGC 365453 37 100.0 35 ..................................... GTCAGGCAATGCACGTATCACCAGGCGATGTGCGT 365525 37 100.0 35 ..................................... TTTTAAAAGGATAAGCGGTAAATGGTAAGTGCTCA 365597 37 100.0 34 ..................................... TCCTTTCGGTTGAGTTAATGAGTATGCGGTTAGG 365668 37 100.0 35 ..................................... TATTAAAAACGTGTTTGGCAAAGAAGAAATCAACC 365740 37 100.0 36 ..................................... AGTCAGCCGATGCGCAACATCGAAACAGGCAAAGAG 365813 37 100.0 34 ..................................... TTCGGTGGTAAGGGTGATGCGCACGCGATCTGGA 365884 37 100.0 35 ..................................... ACTTTTGAGGGTGTCAACACCGTCGACACGTCTAA 365956 37 100.0 35 ..................................... CATAGAGCCTTTGGCTGCGGCCATTGAGGTAGCAG 366028 37 100.0 35 ..................................... AAGCGTGGCCTCAATCGCCTCTAACAGCTTGCGAG 366100 37 100.0 34 ..................................... CATTTAATATTGTCTGATTTTAGCCGCAACCCGG 366171 37 100.0 34 ..................................... TTCATGCAGCGCAGGGCAACTTCAACAAAGCGAA 366242 37 100.0 35 ..................................... TTTTTCCATATCTAGTGATGATGGTCGTTCGATTA 366314 37 100.0 35 ..................................... TCGTACGCCTTGTCGCACCATCGGCGATACACCAC 366386 37 100.0 35 ..................................... ATTTCAACTATTCCCTGTTCGACAACCGCGTCGCG 366458 37 100.0 34 ..................................... TTGACTTGCAAATACCCCATCTGCTGCTTGGGAT 366529 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 64 37 100.0 35 GTAGCGCCCGTCCTTCGGGACGGGCGAGGATTGAAAC # Left flank : GCTATCTGCCGTTTCTTTACCGTTAACTACTATGCTGATTATTATTACTTACGATGTATCCACTATCACCGCTGCCGGACGTAAACGGCTGCGTCGTGTCGCGAAAGTTTGCGAAAGCACTGGGCAACGAGTGCAAAATTCTGTGTTTGAGTGCAAGGTTAATCAAATGCAGCTTGAAGAATTAGAACGGCGACTGCTTGCCGAGATAGACGAAAAAGAAGATAGCCTGCGCTTATATCGCTTGACCGAACCGGTGGAGTTGCACATCAAGGAGTATGGGAATTTCCAAGCTGTGGACTTTGAAGGGACGTTGGTAATATGACGCGCGAACCCGTAGCAACGGCACAAACACGGCAGGTTCGCGTTGTGGCTAATATATTGACGAAGGAGGATTTCCTGCTTTCGTCGTTTGATTGTACGGGCTCTCTGTTGCTTGAGAACAGAGGGTTCGCGCAAAGTGCGCTTTTCAACGTTGAAAGTCATGATGTTGTAAGCGGACT # Right flank : CGCCTGACTGTCGCCAATTAAGAATAAGGGCGGTCGTAGTATTTGGGGTAGAGATGCGCTACACCAAGCTAGCACTACCTGTTGCACTTCGAACTTGAATCCGCCATTTATAGTTGTTTCAATTTTTAGATGAAAACATCTAAGGCGCTCATTTTTCTCAAAGATGTTTGACAAAATACATGGACATCTTAGGAGAAACTGAGCACCTTAGCAGCAATAGTGAAATCTTGATATTCATTGCCCTTGTGGAAATCACGAAGACCGTCAAATATTATGAATATTGCTGCAAGGAACTTGGTGGTCTTTGGGATGAGTCTAATATTTAAAAGAAATTTTACGAAGGGTCAATATGCAATTTTTCATAAATTCTACAAGATAGTGTCGATGTTAAAAACAAAAAATGGCAGAATTCACTTCGTGTACGAAGTAACTTGGCCACAAAATTTAAATGGAGAAAAAAATGAGATCACCTAAATTTGCATCAATTAAACATTTAATCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGTCCTTCGGGACGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA // Array 2 1078198-1079203 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019547.1 Candidatus Nitrotoga sp. AM1P chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1078198 29 100.0 32 ............................. GAGCTTCTATGGTTTATGTTGTGGCGGAGGAT 1078259 29 100.0 32 ............................. CACGTTTGCCGGGTATGAGGGGAGACTGCACT 1078320 29 100.0 32 ............................. GAATATTGGGCTGAGCGGGAAGAGCGGCTTGA 1078381 29 100.0 32 ............................. CCAGCCTTGCCTGAGTGATGATCGCCAGCTTC 1078442 29 100.0 32 ............................. AATCCACGCATACGCGCCTTTGATGTAGTTGC 1078503 29 100.0 32 ............................. GCGCTGCATGTTTCCGTCGTTTGTGATCAGGG 1078564 29 100.0 32 ............................. GTTCGGTAAGAACGATATTTTCCGCGTCTTAG 1078625 29 100.0 32 ............................. CCTTGGTGCAGGCCCACAAAGCTGCTGTAGAT 1078686 29 100.0 32 ............................. GAGACGGCTATGAACACATTTTTACCGATCAG 1078747 29 100.0 32 ............................. CTCGATAAATTATTAATTGAATCATCTATAAA 1078808 29 100.0 32 ............................. GCATAACAACAGGCTTGATAGACCTTGATGCC 1078869 29 100.0 32 ............................. CCAGTAAATTTAATTTTTGATTTTGATATACT 1078930 29 100.0 32 ............................. ATACTATAAGATACTATTCTCTATTCGTACTA 1078991 29 100.0 32 ............................. GGCTAACTAAAATGGATCCATTTACTACGCAT 1079052 29 100.0 33 ............................. GAATGGGGAGCAGGGCAAACTTAGTAATCAGAA 1079114 29 100.0 32 ............................. CTAGATCGTAGGAGCACACTTTATAGCAAGAT 1079175 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 GTGTTCCCCACACCCGTGGGGATGAACCG # Left flank : ACATTGAAACTGTCCTCTCGGAAGGCGGTTTGACGCCACCAGAGCCGTCGGAAGAATCGGTTCCCCCTGCCATCCCTAACCCTGAAAGTATTGGTGATGTTGGTCATCGTTCTTGAAAACGCGCCGCCACGTCTACGTGGACGACTCGCCATCTGGTTGCTGGAAGTTCGTGCTGGCGTATATGTCGGCAATTATTCACGACGCTTGCGGGAACATATGTGGGAGCAAGTTGAACAAGGTGTTGAAGACGGCAATGCCGTCATGGCATGGCGTACCAATAACGAAGCAGGATTTGATTTTTTGACATTGGGTGAAAATCGACGAATGCCAGCAGAAATGGATGGTGCAAAGTTGGTTTCGTTTCTACCAATTATTGACAATACAGCTAAGTAGTCTGACGTATGAGCATGGCCGTTCTTTAACAAACTAAATTGATGTAAAAATTCGGTAGGAAACTGAATCACTATATAAACATTAATAATCAATTTATTATATTTAGT # Right flank : GGGTGAAGTATGGAAAAGAGCAAAAGAAGTCGGAAGCAATATATCCTAGAACAAGGAGCCACTTGTGATAACTGGTTTTGGAGTTGGTCGTTTGTCAATCACAGAGACAAGATAATTATCTTTGGCGCATGGGATACAAATTTACAAGGTAGCAAGTGTCTGATATTGGGAAAGAATTGGGAAACAAGGCCTGACGATAGAAAGTCTAATGGTTATCCTCAGTCTTTTAGACATATTGGACTTATAGAATATCAAGGCTATAAACTCAAAACGTTTCCTCTTATTTACTCTGATGCAAATAAAGATACTTTAGGTCAAGGTCCGGCAAAAATTGACGGATTCATTGAAGATCTTCAGTTGAAAGTTTTGCAGGAGTTATATGACGGATGGTACGCCTGTGATGAAGATACTGAAACATTAATAGCAGAAGAAATTAATCCTCCTGAGAAGTATATTGAAGGTGCTTCACAAATAGTTTCTGTGAATGCTTATGAACGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //