Array 1 97556-99171 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPM01000004.1 Salmonella enterica subsp. enterica serovar Infantis strain 132 NODE_4_length_308480_cov_14.7026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97556 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 97618 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 97679 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 97740 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 97801 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 97862 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 97923 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 97984 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 98045 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 98106 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 98167 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 98228 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 98289 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 98350 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 98411 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 98472 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 98533 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 98594 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 98656 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 98717 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 98778 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 98839 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 98900 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 98961 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 99022 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 99083 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 99144 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115454-117351 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPM01000004.1 Salmonella enterica subsp. enterica serovar Infantis strain 132 NODE_4_length_308480_cov_14.7026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 115454 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 115515 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 115576 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 115637 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 115699 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 115760 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 115821 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 115882 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 115943 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 116004 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 116065 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 116126 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 116187 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 116248 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 116309 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 116370 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 116431 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 116492 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 116553 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 116614 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 116672 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 116733 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 116794 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 116855 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 116916 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 116977 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 117038 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 117099 29 100.0 11 ............................. CGGCCAGCCAT Deletion [117139] 117139 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 117200 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 117261 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117322 29 93.1 0 A...........T................ | A [117348] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //