Array 1 5321-6203 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPGW01000116.1 Salmonella enterica strain 44 contig0000116_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5321 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 5382 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 5443 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 5504 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 5565 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 5626 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 5687 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 5748 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 5809 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 5870 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5931 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5992 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 6053 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 6114 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6175 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : ATGCCGGAACGCTGATGGCGTTTGACATGAGCGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51-1288 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPGW01000115.1 Salmonella enterica strain 44 contig0000115_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 51 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 112 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 173 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 235 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 296 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 363 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 424 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 485 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 546 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 607 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 668 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 729 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 790 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 852 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 955 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1016 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1077 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1138 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1199 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1260 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================================== ================== 20 29 100.0 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGCAACCAGGCTGGATCGTAACTCCTATCCCCTCG # Right flank : GCAACCCATTAATTAACTAAGCAGTAATAAACGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //