Array 1 139266-141307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JREO01000009.1 Vibrio cholerae O1 biovar El Tor strain 5/66 Contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 139266 28 100.0 33 ............................ TAACGAAGCGCTACAAACCGTCATCGAGGCGAG 139327 28 100.0 33 ............................ TATTTCATCGTTAACGCTCGCAACCCCTACGTC 139388 28 100.0 33 ............................ CAATCAACGCACTAGACAACGCCCAAATGAACC 139449 28 100.0 33 ............................ CAACGCTATGCCCGCTAAAATCAGTAAACAAGA 139510 28 100.0 33 ............................ TATATTTCGCTCCCGTCTCGTCAACTAAAATCA 139571 28 100.0 33 ............................ CTTCAAATAAGTAACCAGCCTCTGACGCTGTTA 139632 28 100.0 33 ............................ CACCGCTAATCATGGTGGAACGAACGCCATCAA 139693 28 100.0 33 ............................ TGATTTTGGAAGTAATGGGAACTGAGCGTTAAG 139754 28 100.0 33 ............................ CCAAAAACCTACGCGGTTTTAAATGGATTCGAC 139815 28 100.0 33 ............................ TATCTTGGTTTTGCAGGTTGTTAATCTCAGCGT 139876 28 100.0 33 ............................ TGATTGGTTCCAGTTTATGACAAGAACCAACAC 139937 28 100.0 33 ............................ TACATTGGCAAGACGTTTGTTTTTCGCTGTGTA 139998 28 100.0 33 ............................ CGACTTTTGCATCATCGATGTACGGAACGCTAG 140059 28 100.0 33 ............................ CACTGAGATTGCGTGTCGCCGACTTGCGCTTGC 140120 28 100.0 33 ............................ TAGACTATCAATGTGCGCTTGCAAGTCTTTTAA 140181 28 100.0 33 ............................ TTGATCGCTCTGAAATTGTGACTTGTTTTGTTA 140242 28 100.0 33 ............................ TAGATCTTAATTGTTCGCGTTGAATGGGAAATT 140303 28 100.0 33 ............................ CAGATTGTAGATAAGCAGGAGACTGCCCACCAG 140364 28 100.0 33 ............................ CGCTTCTGTAGAGGTGATGGGTCCAAAGATGTT 140425 28 100.0 33 ............................ TACATTCGTGATATCAGCGGATGCGCTTGGTCA 140486 28 100.0 33 ............................ CAAGGAAATTTGCTACCAAAAGACGTGATCGAG 140547 28 100.0 33 ............................ CCAAGCAGCAATAAAAATGGAGAGCAATCCTAT 140608 28 100.0 33 ............................ CCAAAGCAATTCAACAGAGGCCATCAATCGCCT 140669 28 100.0 33 ............................ TATTGCATTGAATTGCCCCACTCTTTGACCACA 140730 28 100.0 33 ............................ TCAAAATACTTCTCGCACATCCTGCAAGCGCTG 140791 28 100.0 33 ............................ CCGAATACAACGGGCAAGCCTGCGCTAACGTTC 140852 28 100.0 33 ............................ TACGTCCAGCATTACCGCCGCGCCGTGTCGAGT 140913 28 100.0 33 ............................ TATTTTGCGTATCACCGAAGCGCTGTAGGTTAT 140974 28 100.0 33 ............................ TACGTCCAGCATTACCGCCGCGCCGTGTCGAGT 141035 28 100.0 33 ............................ TCCTCCCTGCTCATATGCCGTTAAAACTTTCTC 141096 28 100.0 33 ............................ TCTGATGCGGCAAGCTCTTTCGCTAGCTCGATT 141157 28 100.0 33 ............................ TACAACATCCATGCAAGCGGCAAAGAATACAAA 141218 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA T [141239] 141280 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.2 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : AGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //