Array 1 172392-173457 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTNI01000006.1 Escherichia coli strain MOD1-EC6469 MOD1-EC6469_6_length_211593_cov_29.169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 172392 29 100.0 32 ............................. TTACGCCATCAGTTGAATATGTGCGCGCCATT 172453 29 100.0 32 ............................. CGCTACTTGCGCCGGGCGCAAAACTTGGCTGA 172514 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 172575 29 100.0 32 ............................. TCTTCACCGGTTTTGATTTCAAGTTTTTTGAG 172636 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 172697 29 100.0 32 ............................. CGATCTTCAATTCTGCAAACGTCCAGGTAATA 172758 29 100.0 32 ............................. GCGCGGCCTGTCTTATTCCGTCTAATACCCCT 172819 29 100.0 32 ............................. CGTACGCGATGTGGATCAGTGCCGCGTTCTCT 172880 29 100.0 32 ............................. GCGAACTCGTAATTTATCAGGCTCGAATTCAG 172941 29 100.0 32 ............................. GCGCTCACGTTTAGTGCCAGAGCCAGGCGGCG 173002 29 100.0 32 ............................. TCGCTGGCTACCCTGGGGGTATTCAGTGACTA 173063 29 96.6 32 ............................T TGAGATGCCGTTTGCCGTTTTTCTGTTTTTTC 173124 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 173185 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 173246 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 173307 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 173368 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 173429 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 199160-200593 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTNI01000006.1 Escherichia coli strain MOD1-EC6469 MOD1-EC6469_6_length_211593_cov_29.169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 199160 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 199221 29 100.0 32 ............................. CGTGTTTCTGGAACCGTAATTTGCTGCGGTAT 199282 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 199343 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 199404 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 199465 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 199526 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 199587 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 199648 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 199709 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 199770 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 199831 29 100.0 32 ............................. AATGACTTTATCGACCGCCCGATCGATGTTCA 199892 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 199953 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 200014 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 200076 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 200137 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 200198 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 200259 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 200320 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 200382 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 200443 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 200504 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 200565 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //