Array 1 77883-76354 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCQ01000004.1 Cronobacter sakazakii strain MOD1_LR641 LR641_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77882 28 100.0 33 ............................ AGAAACTCGGGGTTGCGCTCTCGGTGAATAACC 77821 28 100.0 32 ............................ TGCCCATCCGGCACACCTTCGGCGAAGAAATT 77761 28 100.0 32 ............................ ATATCGTCAAGCCGGTTAATGAGGCGCTTGCC 77701 28 100.0 32 ............................ CTCTGCACCAGTGATGGAATTACCCATGGCAC 77641 28 100.0 32 ............................ TCGATCGCGTAATCGCGCGCGCGGTTGAGTGT 77581 28 100.0 32 ............................ GCGGATCACTTCGGTGGTTGGCGCGACGGCGA 77521 28 100.0 32 ............................ GCGTGGGGCTGGCGTTAAGGGGCAATGGCGCG 77461 28 100.0 32 ............................ TGGGTGTGTTTTGACAGGGACGCATTCGAACT 77401 28 100.0 32 ............................ TCCATCTTGTCCAGGCGCTTTTCCATCTCGTC 77341 28 100.0 32 ............................ ATCGCGTGTTGATGCTGGCCGCAGCATCTGCA 77281 28 100.0 32 ............................ AGGGCGCTCAGATTGCCGTCATATTCGTTCTT 77221 28 100.0 32 ............................ TGCACGCCGGCGTTTTGTTTAAACGTCGCGTT 77161 28 100.0 32 ............................ GGCATTACGCCGGGTGAGGTTAAGTTCCGCTA 77101 28 100.0 32 ............................ TTTGCTCTATCCTCGTCAGATAAGGAATAAGC 77041 28 100.0 32 ............................ ACGTCGTCAGTTTCAAGCTCACTGCGAAGGAA 76981 28 100.0 32 ............................ CGCTACCGTGTGCTTCATTCACCGCGCGAAGT 76921 28 100.0 32 ............................ TTGTTGTGCAGGCCCGCGAACGCCTCTGTGTT 76861 28 100.0 32 ............................ GTTTTAATGCCGAAGAAGGCACGGCTGACCTT 76801 28 100.0 32 ............................ TCTGGCGTTCGGTTTGCGGCGGTATCGTCCCA 76741 28 100.0 32 ............................ GTTGTGGTGAATGCGCAGGCTGATGCGCTGAT 76681 28 100.0 32 ............................ TCAGAATGGCCCAGCGATGACGGCTACCGAAG 76621 28 100.0 32 ............................ GTACGACCCGCAGATTGCTGAGTACGAGCAAA 76561 28 100.0 32 ............................ AGCGCTGCTATCAGCTCAAGAACGGCAGCGGG 76501 28 100.0 32 ............................ AATGGGGTCATTATCGGTTCCTCCGTGATGCC 76441 28 96.4 31 ......................A..... TCGAACACAGCGACGCCGTTCCCGTCGCCGC 76382 27 92.9 0 ........................-..T | G,T [76359,76362] ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCGCTGGCGGAATTAGAGGCTACGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACTGGTTCAGGGCTGGCGCACCGTGACGCGCGTGCAGGTGAAAAGCAACCCCGAACGCCTGCTGCGCCGCTCAGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCACAGCAGCGGCTTTCTGGTTTACAGGAGCAACAAACCGCTCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCAATACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGTCTCGCTAACCTGTTGATTTTTATAATGGGTTAGTGAGGCGTTGAAAAAAGGGTTTTAAGAAGTAAGCAGCGTTTATATTTTTATAAACAATGGGTTAAGAATTTTTGTCTTCA # Right flank : CACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCCGGCAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGAATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 88721-86592 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCQ01000004.1 Cronobacter sakazakii strain MOD1_LR641 LR641_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 88720 28 100.0 32 ............................ TGTGCGCACTCAGGTCATTCAGCCTGCGCTTG 88660 28 100.0 32 ............................ TGCCCGTGAAAAGACCAGTAATCATCCTCTTC 88600 28 100.0 33 ............................ CCGCAAAACTGGAGTGGGCCGCACAGGAGGGGT 88539 28 100.0 32 ............................ TGCCTGACCTGATGAAGGTGCGCGGCTCAATG 88479 28 100.0 32 ............................ GTCTCCGCCAGCGCGCCCCAGCCCTGCGCCGC 88419 28 96.4 32 .....................C...... CACTGATAGAGGCGCAGCTCGCGCATAACCTC 88359 28 100.0 32 ............................ TCTCCAGTGCCATCCTCAGCCCCGGCGCTATC 88299 28 100.0 32 ............................ AAAAACGTTTTGCCAGACCTGGCGGATGAGGC 88239 28 100.0 32 ............................ AAAACAATATGGCGAGCACGGCGGTTGCGGGA 88179 28 100.0 32 ............................ GTTGCCCGCTGGTCAAGAATTTTCAACGACAC 88119 28 100.0 32 ............................ ACCTGTTGCGCGTTCTGCGCGCGGGCCTGCGC 88059 28 100.0 32 ............................ AGGGAGGACACGCGGCGGCCGTCAACGTAGCG 87999 28 100.0 32 ............................ AGCGCGAGCTTGACATGTTAAATATCTAAGGA 87939 28 100.0 32 ............................ CCGCCGTCGCGCTGTTCTGCGCGGATTTCTCC 87879 28 100.0 32 ............................ TCCGTCCGATCGTTTAACGACTGGAAGGAAAG 87819 28 100.0 32 ............................ AGAGAAAGGTGCGAACGGCGTACCGGACAGGC 87759 28 100.0 32 ............................ CAGCGCTTCGGCGATAATCTTCTCGCCGCGCG 87699 28 100.0 32 ............................ ACCAGCTATCGACCGCGCCCACATCTGCGTCG 87639 28 100.0 32 ............................ GTTACGCCAAAATCAACGGGCGATAACTGCAG 87579 28 100.0 32 ............................ TTTGCCGGGATCGTCGCTCATCAGCATCATCA 87519 28 100.0 32 ............................ AGCTCCTGCTCACACGCCGACAGGTCGTCGTA 87459 28 100.0 32 ............................ ACACTATAGTCACCTAAATTCAGAGACGGTTT 87399 28 100.0 32 ............................ TATGGCTGCGACCGATATTGCAAAAATCGTTG 87339 28 100.0 32 ............................ CGTGCAGAACTGACCTCAACGCGCGCCGCGAC 87279 28 100.0 32 ............................ TCACCCACACTCCACGGCCCCAGGTGTAGCGA 87219 28 100.0 32 ............................ GTCGGCCCGCTGTAAATCAGGGTCCAGACGCC 87159 28 100.0 32 ............................ AGTTCGCGCACGAAGTCGGCTGTATAAAGCAC 87099 28 100.0 32 ............................ GCTGAGCAGATATCCGAAACTGACCGCCGTTG 87039 28 100.0 32 ............................ ATCTGTATCAGCCCAGGAACCGTAGTCGTCGT 86979 28 96.4 32 A........................... GGTGCGCTTAGTGCCCTGGACGGCCTCGATAT 86919 28 96.4 32 A........................... AGGATCACTCGATAAACGGCGGCGCAGACGTG 86859 28 96.4 32 A........................... TCCGATGCGGCTAAACAGGCGTATCAGGACAT 86799 28 96.4 32 A........................... AACAGCTCGGCGTCCTGGTAAATTCGTTCCCC 86739 28 100.0 32 ............................ AAACCTCGACCGCGATACTGGCAAGCTCGACA 86679 28 100.0 32 ............................ TGTAGGGGCGTACCCCTCCCGGCCAAAAAAAA 86619 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCGAGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : ACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAATAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCACGGTAAAATTATCCATAAAATTTATGGTTTCTGCTGTACGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCGGTGCTAATTAGCCCATATAACGGCGATGACACGTAAGAACCACATTAACTACAGACATTTGCAGGTTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAGTAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAGTTGACATTTAGTGTCATTCATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATTTTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 179381-182644 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCQ01000013.1 Cronobacter sakazakii strain MOD1_LR641 LR641_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 179381 29 100.0 32 ............................. CAATCGAGGAATTAGTGACTAAACAGGCAGCC 179442 29 100.0 32 ............................. ACATCTTCATCCTAGCCGGTAACTATCTGCAA 179503 29 100.0 32 ............................. CCAACTCAAACGCCGAGCCGATTCACGTATCT 179564 29 100.0 32 ............................. CCATTAACATCTATCAGCGCAAACATACCGGA 179625 29 100.0 32 ............................. CCTGCCGTTGCGCGCGGGTGGCGGCGCGATAC 179686 29 100.0 32 ............................. TCGGTTTTTATGCCGTAATAGCGCCACTCTAT 179747 29 100.0 32 ............................. CGCGTAGACGGTGCGGGGAGGTGTTCAGTTAC 179808 29 100.0 32 ............................. CATCTACCACCCGGCGCGGTGGTCGTGATTGT 179869 29 100.0 32 ............................. GAGTCGGTTCCGCGCTTCAACGCAAGGAAAAA 179930 29 100.0 32 ............................. AGCTTTACCGCGCTCAAGGATTTCCCGAATGG 179991 29 100.0 32 ............................. AATCTCGCGTCTGCATTGTCGCGCCAGTTATC 180052 29 100.0 32 ............................. GACTTTGCCACGATACCGAATGCGATCATGTC 180113 29 100.0 32 ............................. TATGACATACTATGAGAGCGCAGCGGGCGAGG 180174 29 100.0 32 ............................. AATCGACACCTTCTTACCGTCCACCAGCGTAT 180235 29 100.0 32 ............................. CCTGGAGTCGGGCGAAGTCGCGTTATATACCG 180296 29 100.0 32 ............................. CTGCGTTCGTCGTCGAGCTGCAGCACGTTGTT 180357 29 100.0 32 ............................. GTTCGCGCAACTCAGCGAGCGGCGGCAGCCGA 180418 29 100.0 32 ............................. GCAGGCTCAGTGGTCAGAAGCTGAATGGTCGA 180479 29 100.0 32 ............................. CAGCCAGCGCCGGAAATAAACGTTCATATCGA 180540 29 100.0 32 ............................. AAACTGACTCTACAACACCTGGATACCTGGGT 180601 29 100.0 32 ............................. GACGCTTTGACGGAATGACGGACATGTATGAA 180662 29 100.0 32 ............................. TGCTGCAAAAAGAATTACTTGGCACCGATGAT 180723 29 96.6 32 ......................G...... ATCCGCGGGGAGGAAACACTGACGGTACATAC 180784 29 100.0 32 ............................. GCCATGAGAGAGACGGCATAGACCTGAATCAG 180845 29 100.0 32 ............................. GCTGACGTTCTGCAGCCATGCGCCTACGTGAT 180906 29 100.0 32 ............................. ATCCAGCGTGAGTAATATATAGCTATGTTATT 180967 29 96.6 32 ............................T GAAACGGCGGTTACCCTGCCGGGAACGTGGCG 181028 29 100.0 32 ............................. CAGTCTCTGGCAACCTCCCAGCATTCGCTACT 181089 29 100.0 32 ............................. CGGTCCATTTTCTTACCAAAACCGTATGTTTT 181150 29 100.0 32 ............................. CAATTCTCCCGCCGCGGGTATACCGCGGCAAA 181211 29 100.0 32 ............................. CTGGTCAGCGTAAACGCCGCAAATACGACAAA 181272 29 100.0 32 ............................. GCAACTTTTAGCGCCGCATTCTCCGCCGCTAG 181333 29 100.0 32 ............................. TAGGGAATCAGCGCCAGCATTTTGCGCTTGTC 181394 29 100.0 32 ............................. AAGTGATAACAGTGCTATTGCCGTTTTTTGAA 181455 29 100.0 32 ............................. GCTAGCCAGGTCGTTGCCAGCTTCATGCCCTC 181516 29 100.0 32 ............................. AGCGAGACGGTCGCAGCGTGTAATCTACAGTC 181577 29 100.0 32 ............................. ACAACTGGCAACTGGTGGATATCGAGACCACT 181638 29 100.0 32 ............................. TGCGTGCCACGGGTAAGGAATACGCCAGCTTT 181699 29 100.0 32 ............................. GGGTGGCATTTAACCCCAAATACCCGCCGCCA 181760 29 96.6 32 ..A.......................... GCAGATCCAGGTAACGTTGCGCTGGCGCTGGT 181821 29 100.0 32 ............................. AATGCGATCATCGATATCGGGCAGGCTGTCAT 181882 29 100.0 32 ............................. GTGTGAGACTTTTGCGCCGCCTAACTTGATCG 181943 29 100.0 32 ............................. CAGGAGATCGCCAAATCAACGCCCAGCCAGAC 182004 29 100.0 32 ............................. CCGCGGCGGTATTCCCTGCAGGCCTGGTTATT 182065 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTAACAGGA 182126 29 100.0 32 ............................. GCGCGACGTATCGCACCGTTGCGCAGGATACC 182187 29 100.0 32 ............................. GTTATCATCTGAATGCCTAAAATTGAGGAATT 182248 29 96.6 32 .C........................... GCGGTTGCACTCCACCGCGAAACCCTCGAACC 182309 29 100.0 32 ............................. TTTTCGAAATTGAGCATATTTAACCTATGATT 182370 29 93.1 32 ........T..A................. ATTTTCGAGCAAAGAGGCAACAGGTCTTCATC 182431 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 182492 29 96.6 33 .C........................... AACGCTCGCAGCAGGTACGCTGCAGCAACCAGC 182554 29 93.1 33 .C..........T................ AACGCTCGCAGCAGGTACGCTGCAGCAACCAGC 182616 29 96.6 0 .C........................... | ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.3 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTCGTGTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GAACGCTGACCTGGCGAACACGCTGCAAAATCTCCGTGCCCCGCCAGCCGTAATAAACCGCCCAAGCTCTTCGCGCCTGTCAATCACCGCCCCCTTTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTATTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 208932-210181 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCQ01000013.1 Cronobacter sakazakii strain MOD1_LR641 LR641_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 208932 29 93.1 32 .T..........C................ CGAGAGGTAGTAAGCAGCTTCTGTAAGCTCAT 208993 29 93.1 32 .T..........C................ CCCGCACCAGTTCTTACAACCGAGGGACGCCT 209054 29 93.1 32 .T..........C................ GAAACAGCCAATCAATGATGCCTACATCCGGT 209115 29 93.1 32 .T..........C................ CCCCCTCTGGTTTTGAGGAAGAAAATGATGGC 209176 29 93.1 32 .T..........C................ ACCTTCGACACCGGGTTTCAGACTGACCAGCC 209237 29 100.0 32 ............................. ATATCGTCCGCGTTATCGCCGTTTTCTTCGCA 209298 29 100.0 33 ............................. ATATTGACCGCCACGTATGACGCCGAGGCAGAC 209360 29 100.0 32 ............................. CTCGTCATACAGGGCATTTGCAAGACGGGTAT 209421 29 100.0 32 ............................. TGAAGTTATCATGCCAACGCCATCTTGACGAT 209482 29 100.0 32 ............................. CATCTTGTTAAAGTCGTCGTGATCGGGCCAGC 209543 29 100.0 32 ............................. AGATCCTGAATGAGACCGAGCAGAACACCATC 209604 29 100.0 32 ............................. ATTTCATTGGTAACTGAGTTGACTGACGAGGA 209665 29 100.0 32 ............................. GATTACCGCCATCTCGTCACGCAACTTTTCAT 209726 29 100.0 32 ............................. TGGGAACGCATTCTGAAGGAAGACCCGGCATC 209787 29 100.0 32 ............................. GGCCACATCATCAAACTGGATACCGTGTTTAC 209848 29 100.0 32 ............................. GCCGCATTGCAGGAACCACTTATTTTAAACTG 209909 29 100.0 32 ............................. CGCTGCAATGCATTCTCAGAGCTGATTTTATT 209970 29 100.0 32 ............................. CGTCGTCACTCGTTGGTAGTGCCAGCGCCGCA 210031 29 100.0 32 ............................. CTCAGCGATACGCGCGTCTTTCTCCCTGCAAT 210092 29 93.1 32 ............C.....C.......... GCACCAGCATTAACGCCGAATACATAATTATG 210153 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 97.9 32 GAGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTGAAATCGAACCACCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGTGACGTATCGCGTCGGGTGCGTGAAATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAGTGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTTCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGCTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGCACCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATTAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTAATATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //