Array 1 42141-42709 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKC01000021.1 Cronobacter sakazakii strain cro1346A1 contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 42141 28 100.0 32 ............................ TAGCATGAGTGAAAAATGTACGCCGCCTGTTC 42201 28 100.0 32 ............................ TTGGCGTATCCTGACCCATACTTACCCTTACC 42261 28 100.0 32 ............................ AACGCCCACGGTTACAATTACGTGTTCACGGG 42321 28 100.0 32 ............................ GACAACGCCGCCCGCGCCGACGCGCGCCTCGG 42381 28 100.0 32 ............................ TGTCTCAACTGGTCGATAACCACAAAGCAGGG 42441 28 100.0 32 ............................ TCTCGCCAGGCGTTTGCGACGTCACCGCCAAG 42501 28 100.0 32 ............................ AACTGCTCGCACTGCTTCGTCTTTTCGCGCAG 42561 28 100.0 32 ............................ GGTCGCTATCACGCCTGTAAAGGCCCGCACGC 42621 28 100.0 33 ............................ GCCGAAACTTTTAGCGGCCTTGCGGGCAACTGA 42682 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATGCGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGACGTTGATTTTTAATACGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAACAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : AACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAGTAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCACGGTAAAATTATCCATAAAATTTATGGTTTCTGCTGTACGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCGGAGCTAATTAGCTCATATAACGGCGATGACACGTAAGAACCACATTAACTACAGACATTTGCAGGTTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAGTAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAGTTGACATTTAGTGTCATTCATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATATTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 51420-52827 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKC01000021.1 Cronobacter sakazakii strain cro1346A1 contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 51420 28 100.0 32 ............................ AAAATGACGCTGGCGGCGCTCGACGCCACATT 51480 28 100.0 32 ............................ GCACCCGGCCCGCGACTTGTTGCGAACGTCTT 51540 28 100.0 32 ............................ AACGAGTGACGACGCCTGCGACGCAGGCAGCA 51600 28 100.0 32 ............................ GCGCAGCCGACCGGCCCGCACCACGACCCGGC 51660 28 100.0 32 ............................ CCAGGGTACGCTAATTGGCTCTTGCGCTGCCG 51720 28 100.0 32 ............................ CGGGCGCGCGGTGCTTTGATGTGCTTGGATCT 51780 28 100.0 32 ............................ TCTGCTTTCAGGGTGTGGGAAATATCGCCGCT 51840 28 100.0 32 ............................ CTGAATCGCGATGGTGTCCAGACAGGCACTTT 51900 28 100.0 32 ............................ AGGCGCGAGCGCGCCAGAACGTGCTGGAAACT 51960 28 100.0 33 ............................ GCCAGGATATCGGGCTAACCGTCGCTATCAAAT 52021 28 100.0 32 ............................ GTACTGAACGAAACAGGCGACGCACCCCAACC 52081 28 100.0 32 ............................ TATCTGCGCCGCATGAAACCCACTGACAAAGC 52141 28 100.0 32 ............................ TGCTGGTGTACCAGATGTGGCGCAGGCGCTAC 52201 28 100.0 32 ............................ ATCCCGAAAACATCCCAAAAGTTGCCGCTGTT 52261 28 100.0 33 ............................ CTGGGTGTGGGTAATCGAATTCCGTCGCGTTGG 52322 28 100.0 32 ............................ TGTGCGAGTGGGATAAGGATGACGAGTCTTTC 52382 28 100.0 32 ............................ CCACACGCACAGCAGATATTTCACCCACGCGC 52442 28 100.0 31 ............................ CGGGAAAAATTTTCAGAGAGTTCGTCGAGGT 52501 28 100.0 32 ............................ TTGACGCGCTCGCGACCTATTCCAGCGCGCTA 52561 28 100.0 32 ............................ ATGGCGAAATTTACAGACGCACACGACCTGTT 52621 28 100.0 32 ............................ TGGCCGCGCACCCGCCCTTCGTCGTCGAGTAT 52681 28 100.0 32 ............................ AAATACCGGCTTAACGCTGTGTGGGATATCTT 52741 28 100.0 31 ............................ TGGCGGGTTTTTTATCGTCTTTAGTCAAACA 52800 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCACTGGCAGAATTAGAGGCCACGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCCTGCCACAGGTTCAGGGCTGGCGCACCGTGACGCGCGTACAGGTGAAAAGTAACCCCGAACGCCTGCTGCGCCGCTCGGTGCGTAAAGGGTGGCTGACTGAAGAAGAGGCGCAGCAGCGGCTTTCTGGTTTACAGGTGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCAATACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCGGTCAGCGGTACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGTCTAGCTAACCTGTTGATTTTTATAATGGGTTAGTGAGGCGTTGAAAAAAGGGTTTTTAAGAGGTAAGCAGCATTTATGTTTTTATAAACAATGGGTTAAGAATTTTTGTCTTCA # Right flank : ATTTGGCCCCATCCTTTGCGAATCTGCTCATCGTTCACTGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 194807-195504 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKC01000004.1 Cronobacter sakazakii strain cro1346A1 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 194807 29 100.0 32 ............................. ATAACGAGAAAAAAACGGGTGAATCCTGAATG 194868 29 100.0 32 ............................. CTTTCATTAAGAAGGTATTTATTAATATGATC 194929 29 100.0 32 ............................. CTTCACCGTCGCGGGCATTAAACGGGCGGTTT 194990 29 100.0 32 ............................. CCATCATAATCATCCTTGCTTACTTTTGGCTC 195051 29 100.0 32 ............................. GAAGAATCGGAACTGGCAGCATCTTCAACAAC 195112 29 100.0 32 ............................. CGAGAATTTTTCCGCTGACTACATCCCTTGCG 195173 29 100.0 32 ............................. CGATTTAACCGCCAAGTCTCCCGGCTCCGGCT 195234 29 100.0 32 ............................. CATGCACCGGTAAACAGGTACCAACTTACTTC 195295 29 100.0 32 ............................. ATTTGTTGAAAGAATTATGCGAAGCAATCCGA 195356 28 96.6 32 ...........-................. CGGGAGTGATAACAGGTGAGGGCGAGGCGATA 195416 29 96.6 32 T............................ AACGCTGACCTGGCGAACACGCTGCAAAATCT 195477 28 75.9 0 .C.......-...C.T.C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGTTGACTGTAACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTTAGTACAAAGGGTTACTTTTAGT # Right flank : GCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTTTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCACGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 221517-222704 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKC01000004.1 Cronobacter sakazakii strain cro1346A1 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 221517 29 100.0 32 ............................. GTAACAGACTTACCGGCTGGGAACAGCGACAG 221578 29 100.0 32 ............................. GCCAGTGTCGGAAATAACAACGATCTTGTCGT 221639 29 100.0 32 ............................. TTCTTTTCTCCTGCCGCTGTTGACCTGGTTCA 221700 29 100.0 32 ............................. AGGCTTGTAACCAAGCCTCTTTTTATTTGATT 221761 29 100.0 32 ............................. ACACGCTGATTAACGCCTGGCCTTTGTGGGAA 221822 29 100.0 32 ............................. ATGATGGATCGTTTAGTTATCGTGGTAACATC 221883 29 100.0 32 ............................. ATTATTTTTATGCCAGCAATACGGACTATGCG 221944 29 100.0 32 ............................. GCGACCCGACTGCGCTACTGGACGCGGCTTTT 222005 29 100.0 32 ............................. TCTCTTACATTTGACGTACTGGACGCTACCGA 222066 29 100.0 32 ............................. ACGTTGTCATGAACGGCGGGTTGTATCCGGCT 222127 29 96.6 32 ................G............ CTCACACTGGTTGCATTCAACGCAACATAGGA 222188 29 100.0 32 ............................. TACAAGTGGCCGCTTCCACAAATTCGCGAACT 222249 29 100.0 32 ............................. CCAGTTTTCCCGTCGTGGTATTTGACCCGCCC 222310 29 100.0 32 ............................. ATGAACCCACCGGAAGTAGGAAAACTTTCGCT 222371 29 96.6 32 ............T................ TTCTTCGACAAAGGCGGCAAGAAGAAGATCGC 222432 29 93.1 32 A...........T................ TCTGCGAAAATTGCCCCATTCTTCGAAAAAAA 222493 29 96.6 32 ............T................ TGGTCGAAACCACGACTAACGGCGGTAAGACG 222554 29 100.0 32 ............................. GGACGCCTCAACGCTAAGTGCAGCTCTACCCC 222615 29 96.6 32 ............................C AGATCCTGAAGCGCTGTCTGCTGGGCATAAAC 222676 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGGGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACGAATAATGAATCCGGTTTCGATTTCCAGACGTACGGCGTTAACCGTCGTATTCCGGTGGATTTGGACGGCCTGCGGCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTGGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGC # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTCGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 163-1209 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKC01000018.1 Cronobacter sakazakii strain cro1346A1 contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 163 28 100.0 32 ............................ ATCACCCCGACATCGCGTGATCGCGATCACAC 223 28 100.0 32 ............................ GATCAGCGTGAACTATCGCGGCTCGGCGGCAG 283 28 100.0 32 ............................ GATTCGCGTAGCGCGTCGATACGCGCGCAGTG 343 28 100.0 32 ............................ ACACTCCACGGCCCCAAGTGTAGCGAAACAGA 403 28 100.0 32 ............................ AGAAGGCACGCTGTGAGAAAAATTCCGGCGCA 463 28 100.0 32 ............................ ATGTGTTGATGACCTGCATGGTGTTGGAATGG 523 28 100.0 32 ............................ CACCCGGCGAACGGCAGGAAACACCAGGCGGG 583 28 100.0 32 ............................ AGAGGTTAGCCGCCTCTAACGTTTTGTTTATC 643 28 100.0 32 ............................ GCTATACGCGTGCCGCCACTCCGTCTCACTCC 703 28 100.0 32 ............................ AGATACGCCGGGCGCAGACCCTCTGTGCCCGT 763 28 96.4 32 ..A......................... GTGGGATAACGTAACCGACGGCGTGAAAATTC 823 28 100.0 32 ............................ TGCGCGTATACGGGCGAACGGCCGGCGCCACG 883 28 100.0 32 ............................ AGCGCGCCGAGCGCCGAAAATATGCAGGCGAA 943 28 100.0 32 ............................ GGTGAAATCGCTGGCATCCGCATCGAGTGAGC 1003 28 100.0 32 ............................ GCCAGATGACGGCGTCCAGGTGAACAAATCCT 1063 28 100.0 32 ............................ CGTGGGTGTGGGTAATCGAATTCCGTCGCATG 1123 28 100.0 32 ............................ ATCCACGCGGACTGAGAGCCGACTGCATTGCT 1183 27 89.3 0 .....................-CG.... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAACTCGGGACGTGGCAAATCCGTCTCGGGGTTATTATGGCGAGCTTTGTCATGCTCTGTCCAACTGTGCCAGAAAAGTATGACAGTTATCCGCAGGCTTACGAGAAAGCGGCAAAAAAGCTGTTAGAAATCGGGTTTGGCTCCAGCCTGGTTAACAAAGGAG # Right flank : AATCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACACCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCAGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //