Array 1 938247-939207 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXFD010000004.1 Bifidobacterium pseudocatenulatum strain YIT11954 YIT11954_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 938247 36 100.0 30 .................................... AGGTCGCTTCCGAGGATTTGGATTCCGTCA 938313 36 100.0 30 .................................... CCTTCACGTCGTCGCGGTCGCCGGCCTGTT 938379 36 100.0 30 .................................... ACAGGAAACGCAACGTCGCAAACGCCACAG 938445 36 100.0 30 .................................... CCCGCTTCACGGACAAGCCGCGCAACATAG 938511 36 100.0 30 .................................... AAGGAAAAATGAGATGGACGAAAGAAATCT 938577 36 100.0 30 .................................... GTGTACTACGAATCGCAGCACAAGTTCTTG 938643 36 100.0 30 .................................... TTTATTGGCAATTGCTGGAAAATGGGAGCC 938709 36 100.0 30 .................................... AACAAAAATAATCAGGCAGATCATAGTTTA 938775 36 100.0 30 .................................... CATAGCACCCTGCTCTAGCCCCGTTAAAAC 938841 36 100.0 30 .................................... TTGAGGCAATGGCAGATGCAGCAAGCGCAA 938907 36 100.0 30 .................................... AACTCGTAGGAGGGGAAAAATTCCTGAATA 938973 36 100.0 30 .................................... CCAGCATGCATGATTCGATCGGTGAGGTCA 939039 36 100.0 30 .................................... TATTGAATGTCATACTGGAATTGTCCGCCG 939105 36 100.0 31 .................................... AATAGTGGTGTGATTCGCGCAATCAGGGTGG 939172 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 100.0 30 GTGGTCTAAGTCTTTGATCTGACAGGCATCTGAAAC # Left flank : TTCCCCGCGCCTAGAGGGGACGCCGGTGCGCTCCTCCTCGAGCCGGTCCGCGTACCACGACAGCAACGCGCCCTTGCTGGGATAGCCGAGCTCGCGGATCACGTCGGCGGGCGCAGCGCTCGTATTTGACGTACAGGTCCACGGCCCTGTCACGCTGCTCCCTGCTGTACTTCGCCATAAGGGGTTTTCCTCCCGGTCGGGGAGTCCAAGAAAACGTCATCACCTCGTTCGGACTGGATTGACACGCCATTTTGGACTACTTCAATTTAACAAAACACATTGCGCATGGATAACGTCCTCTTCGCCCCTAAGACGGTCGAGAAAATTCTGATAATCGTTGATACCCATGAGCACGTAGGACAGCGTTCCGTTTGACGACAAGGACCGGCGCACGGTCGGCCTTAGACAGCACCGTAGCGGTGCGTCCATTACTGAGTTCGCCGACTGGCACAAGATCCTCAAGCACAAACTCTGTCAAGGTCACATCCACTTTCCCTCCG # Right flank : GCGGCCTTGTATTTCAGCAGGGCGTCCGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCTAAGTCTTTGATCTGACAGGCATCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 1-764 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXFD010000005.1 Bifidobacterium pseudocatenulatum strain YIT11954 YIT11954_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1 36 100.0 30 .................................... TCAAGGATAGCATGGCAGACTACACGTTGA 67 36 100.0 30 .................................... CTATGGAAAGGCTGGTGCCAACGCCGCGCC 133 36 100.0 30 .................................... GTCAGAGACGATGCGAGACGGCAAAGACGA 199 36 100.0 30 .................................... TGTTGTCGGATTGGACTTACTATTCTGATT 265 36 100.0 30 .................................... AGAACCTCTTGCGCCTTATCCAGCAGACCG 331 36 100.0 31 .................................... ATCTTATCGGGGTCAGTCCACACTGTCACGC 398 36 100.0 30 .................................... GGATACACGCCCTGCCGACCAGTCCGACCC 464 36 100.0 30 .................................... GGATACACGCCCTGCCGACCAGTCCGACCC 530 36 100.0 30 .................................... GAGGATATCATGCGGGAAACTTGGGTGACC 596 36 100.0 31 .................................... TTACATGGCTCTCGGATTCTCCACCATCGGA 663 36 100.0 30 .................................... ATCATCCCATCAAAACTCACGGACTTTTTG 729 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 100.0 30 GTGGTCTAAGTCTTTGATCTGACAGGCATCTGAAAC # Left flank : | # Right flank : CCGATAGCCTTGGAGAATCCTGAACGTTCTATGAGAACTGAACATAATCTCCATCGATATACCGACTTCTTCCCTCTGTCAAAAGGACTTTTTTGTCGCAGCATTCCAGGTCCAGAAGCTGCATATGGTGTCTTAATAATTCTCGATGCAAATAAAGTAATTGGCCATTATCACAATATTGAGTTATATGAAGCATCACAAGCATCCTGCCCTCGGCAAGAGCGCCGGCAGTATCAACTACCAGTTGAATTTTATCATAAAGAGAACCCAGAGAACTGGTATCAACACGCGGTTTAGCCATTGCTATCATTGACTTTATATCAGCTTCATCAAGAATACTCAGAGGCAAATTCTCTCTCCATATTTCTTCTTGAATAATCGACTTTATCTCAGTTTGTAACAACAATAATCTACTCAATTCTTCAGGATTAAATCCGTCATTTAACTTCTTAACTGCAGCCTTTTGAAACAAAGCATCATAATCTAGTACTCCTGCGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCTAAGTCTTTGATCTGACAGGCATCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //