Array 1 121567-122387 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSDL010000012.1 Klebsiella pneumoniae strain Kpngiani7132501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121567 29 93.1 32 ............TG............... AGCAACGTTTCCGGATTATATGGCTGGAACGT 121628 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 121689 29 93.1 32 ............TG............... TGGTGTTGTCCACGGTTACCCGCAGGCTGGAA 121750 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 121811 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 121872 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 121933 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 121994 29 100.0 32 ............................. CGAAAACGGCAACCTTCATAAAAACGTCTTTT 122055 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 122116 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 122177 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 122238 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 122299 29 96.6 32 .........................A... CACTACCAGATCCGAATGGACACCCGTAATGA 122360 28 89.7 0 ..............C.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 95.8 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATTTTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTGTACTGGTTATATATACAGTGTTTTTAAGTGATCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 249227-253032 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSDL010000004.1 Klebsiella pneumoniae strain Kpngiani7132501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249227 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 249286 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 249347 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 249408 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 249469 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 249530 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 249591 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 249652 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 249713 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 249774 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 249835 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 249896 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 249957 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 250018 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 250079 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 250140 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 250201 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 250262 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 250323 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 250384 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 250445 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 250506 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 250567 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 250628 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 250689 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 250750 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 250811 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 250872 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 250933 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 250994 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 251055 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 251116 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 251177 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 251238 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 251299 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 251360 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 251421 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 251482 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 251543 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 251604 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 251665 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 251726 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 251787 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 251848 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 251909 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 251970 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 252031 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 252092 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 252153 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 252214 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 252275 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 252336 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 252397 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 252458 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 252519 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 252580 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 252641 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 252702 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 252763 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 252824 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 252885 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 252946 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 253004 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 63 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //