Array 1 107969-107269 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOFV01000002.1 Escherichia coli strain MOD1-EC5159 MOD1-EC5159_2_length_326346_cov_57.7292, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 107968 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 107907 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 107846 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 107785 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 107724 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 107663 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 107602 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 107541 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 107480 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 107419 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 107358 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 107297 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125146-123470 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOFV01000002.1 Escherichia coli strain MOD1-EC5159 MOD1-EC5159_2_length_326346_cov_57.7292, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125145 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 125084 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 125023 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 124962 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 124901 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 124840 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 124779 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 124718 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 124657 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 124596 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 124535 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 124474 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 124413 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 124352 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 124291 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 124230 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 124169 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 124108 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 124047 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 123986 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 123925 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 123864 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 123803 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 123742 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 123681 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 123620 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 123559 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 123498 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //