Array 1 51493-43263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAGV010000006.1 Clostridium beijerinckii strain DJ015 NODE_6_length_126342_cov_51.208926, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 51492 30 100.0 35 .............................. GCAGGTATTGCATTAGCAGCAGTATCAGCGTTAGG 51427 30 100.0 37 .............................. GAATTAAGTCCTGAACAGCAAATGTTTTATGCTAAAC 51360 30 100.0 35 .............................. GGTAAAACCCATGTAAGATGTATATTAAATGATAA 51295 30 100.0 35 .............................. GCTAATAATATAGTCTCTTTTCTGCATCTTCTTCT 51230 30 100.0 34 .............................. TAATTATCTTCCTGAAGGTGGAACAATTAATGAA 51166 30 100.0 34 .............................. ATTGAAACATTACAAAAGGAGATAAAAGAAAGAC 51102 30 100.0 36 .............................. ACTATGAAGTCACCTTCCTCATTTCTTCCTATTGTC 51036 30 100.0 35 .............................. CCCAGCTATAAGACTTATTTTATCAATAATTACTG 50971 30 100.0 36 .............................. TATAATAATACTATAAAGGTGCATTATGGAAAGAAA 50905 30 100.0 36 .............................. TGGCAGAAGGTTTTGGAAAAAAGGCTTAGAGGAAAT 50839 30 100.0 35 .............................. AATAAACTTAATACTATCAAATTTATACCTCCTTG 50774 30 100.0 35 .............................. GCAATTACCCTTAATTCCATTTCTACCCCTCCAAA 50709 30 100.0 34 .............................. GAGTAATGACCATGACCTATTATTCACTGTAGAA 50645 30 100.0 34 .............................. GGAAGCTTAATAGACAAGGATGGAAATGTTGTAA 50581 30 100.0 36 .............................. TGGTGAAGAATTAGGTATTGGAACAATTTCATTTAT 50515 30 100.0 35 .............................. GCTACAGAAAAGTTCTTAAAGCTCTTTTCCGCCTC 50450 30 100.0 36 .............................. ATTATTATTAGTGTTACATCAGTTACAGTAGCCCCT 50384 30 100.0 35 .............................. GGGAGCTGATGTTGTTAGAATTAAAGAACTAATAG 50319 30 100.0 34 .............................. TGGAAGTTCTCTTTAATACAATTAGGTTTTCTTT 50255 30 100.0 37 .............................. CCATAACTGATTATGAAAATAAGAAAGATTTAGTATT 50188 30 100.0 36 .............................. TTAGTCTTATTAAAGAAAAATGGAATTAATTTAGAG 50122 30 100.0 36 .............................. CGCTTTATGAAACTTAAAAGTACACCTTGATAAAAA 50056 30 100.0 36 .............................. CCTAACATACCTTTCTCGAATTTAGCAAAACTTATA 49990 30 100.0 36 .............................. GTGCATTTTGATTGAATCTCATAATTATATAAAGTC 49924 30 100.0 34 .............................. AGTATATGAGCTATATTATATAGATCAAAATGCT 49860 30 100.0 36 .............................. TGAGAAAAGTTGCTCAAAAAGGTGATGTCATATATA 49794 30 100.0 35 .............................. GCAAATGTTATATAAACTTTAATGTAATAACTTCC 49729 30 100.0 34 .............................. GATATAGGTAATGAAATAAGTGATTTTAGAAATG 49665 30 100.0 35 .............................. CAACAGTTACAAATAATGCTACAAACCCCCAAACC 49600 30 100.0 36 .............................. ACTACATTTTCCGAACCTATTAAAATTCTATTTAAA 49534 30 100.0 36 .............................. ACAATAATATCACCAACAGATGCACAATTAGAAGAT 49468 30 100.0 36 .............................. TCATTTCTTTAGCTGTTTTTTCATCTACTCCGTATT 49402 30 100.0 34 .............................. AGAGGATAGAAAGAAGGCTAGGGAATGGCTTATG 49338 30 100.0 36 .............................. TCTGTTAAGGAAAGGAAGTAATAAAAATGAATATAG 49272 30 100.0 36 .............................. GAGTATAAGTATAAACTTTCAGAATTTATATTAAAT 49206 30 100.0 35 .............................. AATAAGTGTTCCATCAATGTTAGTAGAAAAAATAG 49141 30 100.0 35 .............................. GAAACGCTAACAACTACACCAGTTGGAGTTTTATA 49076 30 100.0 37 .............................. ACGATATACATTTCAGGTCTTGTTAATGCTACATGTC 49009 30 100.0 36 .............................. AGGCACACAAAGCTTGGATTTAACAGGACAAACTAT 48943 30 100.0 36 .............................. ATCTCAATTCCCTTATGACTACGATCTTGCTGTAGA 48877 30 100.0 35 .............................. TTCAGTTAATATTGGAGAAATAGAAATCCAAATCA 48812 30 100.0 36 .............................. CCGAAACGAGGTTTAACTGTGGCTTTAGTACCAAAT 48746 30 100.0 35 .............................. ATAAATGTTAAATATGCTGGAGTTGACATAACTAA 48681 30 100.0 35 .............................. ATAACTCAGTTCCACTAAGCCAAGTTATTGAAAAT 48616 30 100.0 35 .............................. AATTATATATAATTTAAGTAAAAAAAGAAAGAGGT 48551 30 100.0 36 .............................. CCTTTCTGCATAGCTCTTACCTCTATTTATTGCTAG 48485 30 100.0 35 .............................. TGCGCAATTGTCAGATAGGGTGAAGATATCTGATT 48420 30 100.0 36 .............................. ATGGAAAGTAGTACCCCGTTGCGAGGATGATATACA 48354 30 100.0 36 .............................. GACACGATATGAAAAGGCTAAGAAGAATAAAAAGAA 48288 30 100.0 34 .............................. ACTAAAAATAAGTTAAGAATAGTTATATTTGCTG 48224 30 100.0 34 .............................. GTTGTTTCAATATGATTAATATTATAATCTTTAA 48160 30 100.0 36 .............................. AATGCATTTAAAATACATCCTTATGAATTGATTGAA 48094 30 100.0 34 .............................. AGTAATGCAAGTATATATTCTTCAAGGTTTTCTA 48030 30 100.0 35 .............................. TCCACAAATACTACTGGCGTTCAGTTTTCTCACGG 47965 30 100.0 34 .............................. TTAAATCCTAAACCCTGCAACTTTTCAAAATCAG 47901 30 100.0 35 .............................. TACTTGGGATAGTGTTACAAGGACATATGCTATTG 47836 30 100.0 36 .............................. ATAAAACAAGCAGTAAGAAAAATTGCTGATAGTGGA 47770 30 100.0 35 .............................. TTGTTAATCATCCTCTCTAAGTTGCATACAAATTT 47705 30 100.0 36 .............................. GTTAGAACCTTGACTAAGAAGATTACTAAGCTAATT 47639 30 100.0 35 .............................. TGGATAATAACAAAAGAAGCTATGATAAGAGTTTA 47574 30 100.0 35 .............................. TAGGGGGCAAATAATATGCCAACTTCGGTAAGTAT 47509 30 100.0 35 .............................. CTTGTGCCATTTCTCCAATAAATTCAGTTTTTATC 47444 30 100.0 34 .............................. TGCTATTTCTGATATTTATAGGATTTTACAACGT 47380 30 100.0 34 .............................. GAAGGAAAGGACGGAATAAGGTTTAAATTAGCAG 47316 30 100.0 36 .............................. GGTAATTGATAGCGAGACCATAGCTAAAAGTGGCAG 47250 30 100.0 33 .............................. TAACCAAATCCTTTATTTCTTCCTGGATAGTTT 47187 30 100.0 36 .............................. TGAACCATTTGACCAGTGGAATATAAACAATAGTCT 47121 30 100.0 35 .............................. ACCATTAAGTCGGCAGGCCGACTTAATGGTGACAT 47056 30 100.0 35 .............................. GTACCTATATTGGTAGTGAATATTTGACAATTTCT 46991 30 100.0 36 .............................. GTACTACCGATAGTTGCTTTTATTTGTGCTGAAAAA 46925 30 100.0 34 .............................. CCATGCATCTTATAGAATTACTTTTCTCAACAGG 46861 30 100.0 36 .............................. ATGAAATCAACATCCCAATCCATAGGAAATGCAAAG 46795 30 100.0 34 .............................. TCTAAAGGTCTTACTAATTCAAAACCAACAATTT 46731 30 100.0 35 .............................. AAAAGAGCATAAGAATCATACAATTGAGCAATTTT 46666 30 100.0 35 .............................. CTTAATGGGTTGTAGTTATTGTACAGAAGAACAAA 46601 30 100.0 34 .............................. ACTCCTATTGTATAGAACGCTTTTGCGTTAGTAT 46537 30 100.0 34 .............................. GTAAATACTTATCTTAGAAGAACTGAAGAGAAAC 46473 30 100.0 34 .............................. GTGACATATACTTTTGATGTAGATACACAAAGTG 46409 30 100.0 36 .............................. GACGAAACCACTATTGCTAATGTAGAAGATTTGGTA 46343 30 100.0 34 .............................. TAAATAAATGTATTTTGTAAAACCAATAGGTCCG 46279 30 100.0 34 .............................. AGAGAATCGGTCTCTATTTTTCTTTTTCCATTCT 46215 30 100.0 34 .............................. AATAGTCCTTCGGGGATTACTAAAAATACAAACG 46151 30 100.0 35 .............................. TTATTAGTAAAAGTCTTCTCTAACGATTCAATTAC 46086 30 100.0 35 .............................. CGATTTATAATAAATAATATTTTAATTATTTCCAG 46021 30 100.0 35 .............................. ATAAATCTATTTCTTACCTCTTAATTTACCAATAT 45956 30 100.0 34 .............................. TTAGCAGTTTCTATTGAAAGAAAGTCTTCTTGTA 45892 30 100.0 36 .............................. AAATTTATTCTGTCATTCTTCATATAAAATAACAAG 45826 30 100.0 34 .............................. ATATGCTGAAATAAATGAACATGCAACTAATATA 45762 30 100.0 36 .............................. CTTAAAATTTTATTAGATGATGCTACAACAGGAAAG 45696 30 100.0 34 .............................. ACTATTCCACCACCAAACTACAAAAAATTTCTAT 45632 30 100.0 35 .............................. ATAGGTGCTGATGTGATATGATCTACTTCTAAAGG 45567 30 100.0 34 .............................. TCCACCATAATTGCAGATTGACCAGGTATTTGTT 45503 30 100.0 34 .............................. AAAAGATAGATGAAGAAAAAGAAGATAGTGACTT 45439 30 100.0 36 .............................. ACTAGATCCAGTAAAAGAGGCAAATGCTGCAGTAAT 45373 30 100.0 35 .............................. CCAGGAGAAGCGTTTAATACAATACAATCTGCATT 45308 30 100.0 35 .............................. ATCTATTATAGATGTAAGAGTTGATTCATCAAGTC 45243 30 100.0 34 .............................. AACGATGCAGTAAAGCAGCTTATAGCAGGTAACT 45179 30 100.0 35 .............................. GCATGGGCATAGAAATGATTAGTTGAAGAAAGGAT 45114 30 100.0 35 .............................. AGATTTAGCGACAGGACAAACTATTGAACTAGAAC 45049 30 100.0 37 .............................. AATATATTTAGTAGACAATAACTACTCACTTTCGACT 44982 30 100.0 35 .............................. ACTAAAAATGCTAATAAGAAAATGTTAACATTTGA 44917 30 100.0 35 .............................. TCCTCAGTTGAGTTAATGCTTCTTTCGAAAAATCC 44852 30 100.0 35 .............................. TCGAAGGTTCACCCATCAATTATTACCTCCTACAT 44787 30 100.0 35 .............................. CCGAAGGTTCACCCATCAATTATTACCTCCTACAT 44722 30 100.0 36 .............................. CCATTAAACGCCAAATCAAGCATATCAACTTTTACT 44656 30 100.0 35 .............................. TCAGAAACTCGGAGACTAAAAAAGCACTACCACCA 44591 30 100.0 34 .............................. GTGGGTAGCAAATTACAACCAATGTGTGGATAGT 44527 30 100.0 34 .............................. GAGTAATATTAATTCGGTCCACCCTGCAGCTGAA 44463 30 100.0 36 .............................. GTGGGCTTATGGTCCACCAGGTACCGAAGGCCCTTG 44397 30 100.0 35 .............................. TATGGAAAACCTTCAGGTAGTATAGCTGGGTTCAT 44332 30 100.0 34 .............................. TAGGTAGCTATTTGTGTGGCGTCTATGCATAAAT 44268 30 100.0 35 .............................. TTAGCTTTTGTGGATTCATCTTTTTGCCTCCTAAT 44203 30 100.0 36 .............................. TTATCACCAAAATTAGGTGACCAATAATCTTCTGAA 44137 30 100.0 36 .............................. AAAGAAAGAAATTACAGGCTTTAGCATTGGAGGAAC 44071 30 100.0 35 .............................. TCATCATCCAGGCATCTTAAATCGGATTCGGAAAA 44006 30 100.0 35 .............................. AGTTGAGCAATAGATGCTAATGACATTCCATTTCT 43941 30 100.0 35 .............................. AGATGGAGAAAAACAAAAAACTAATGAAGAAGGGA 43876 30 100.0 34 .............................. AGCGGTAGTACAACAGGAGACGCTGAATTAATAG 43812 30 100.0 36 .............................. ACTATTTCCATATAAATATCCTTAAGTAATATAGTT 43746 30 100.0 36 .............................. TGTATATCCTTGATCATATAGTATACAATGTTCAAT 43680 30 100.0 35 .............................. ATTTATCTTCAATTTCTTTAAAGAAGTCGATATAA 43615 30 100.0 36 .............................. TTTGGTTTTGATTTGACTAAGTATATCGGAGTTGAT 43549 30 100.0 34 .............................. ACGCTTCATATACGCTATAATACATAAGTACTCC 43485 30 100.0 35 .............................. TGGAGCTTCAGTAAAATATCAAGTTGCCGAAGGTG 43420 30 100.0 34 .............................. TCATTTTGAACATAATCATTATCGTTTAAAACAC 43356 30 100.0 34 .............................. TATCTGACAATTGCGTATTAACGCTAGCCAACTG 43292 30 93.3 0 ........................A....C | ========== ====== ====== ====== ============================== ===================================== ================== 127 30 99.9 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : AGACTTTATTCCTTTTAGTTTAAAGGAGGACATGTAATGAGTAAAACAAGCAATTATAATTATGCATTTGTATTTTATGATGTCAATGAAAAAAGAGTACAAAAAGTTTTTAAGGTATGTAAAAAATATTTGTCTCATTTTCAAAAATCAGTCTTTAGAGGTGAAATGTCGCCATCAAAATTAATAAAATTTAAAACTGATTTAAACAAAGTTATTGATAAAAATGAAGATTTTATATGCATAATAAAGCTAATGAATGACAATGTCTTTGGAGAAGAAGTATTAGGAGTAACATCAGGAGTAACTGGCGAAGATCTAATAATATAATTTACCAGGCAAAAAATAATTGATGCAAGAACAAAACTAGATATAATGCTGAGTTACATAAGTATTTCTAGAACATTAAATTTTGGTAGTGGTACTTGGTAAATTTTTGTGAATATGTTACACTAACTACAGTTAGGGCATTATTCTAGTATAAGAATGGGCTTTTTTCTTTG # Right flank : CAATAACGAACATAAACTTATATAATTTAAGCTCTTGTCAGAAAGTGACAACAAGAGCTTAGCTTTTTTGATTAAATGGATAAATAGAGCCTTATTTCAAAATATTTACGTATTCTATCTATTAATGTATACTTGTATTGAGTACATATTAGATAATATTTTGTTATGAGGGAGTGATAATATGAGTAAATATAGAAGTTCGTACTGTAAAATTTTCATCAACACAGATGAAGAAGAAGAAGTTATATTGAGTTTAATTGAAAAAATAACAATGGGTAGTAAAAAAAGATGGACAATCATCTCGGATTTAATGAAAATAGAATTGATAAACAATGAAGATTTTAGTGAAGAAAAAAGTGTTAAAGAAGAAGACGGTTTTCTATACTCAAAATATTATCTTGGTATTGAGCCTGGAGAAGGTATAAAGGAAGAACAGTATATTACAGGAGTAATAGTCTTGCTGGAAAATCTAAGATCATCAGGATACAAGGTAGTTGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 7869-2119 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAGV010000083.1 Clostridium beijerinckii strain DJ015 NODE_83_length_20935_cov_36.252181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 7868 28 100.0 35 ............................ TATTGTCCAGCCGTAAGAGTTACCGTTCCAGTTAC 7805 28 100.0 36 ............................ CTGGAATTGAAGGTGCTGTTGGTGAACTTGCTGGTG 7741 28 100.0 36 ............................ GACTATAGTAAAGTGTTGTACTTGCACTTGAAGCTG 7677 28 100.0 36 ............................ TGATTTAACCAGATAGATGTTAATTTCATGGCTTCC 7613 28 100.0 35 ............................ GTTCAACTTTCTTTTTAGTCTTAGTTATAATCACA 7550 28 100.0 37 ............................ TCGATATATATGAAAGATATATTAAAGAAATAGATAG 7485 28 100.0 36 ............................ GTCTATACGACCTTTCCCTCTACCACTTTGTATTAT 7421 28 100.0 35 ............................ TACATTGGATATGTTAATTATTTTGTACCAGTTGC 7358 28 100.0 36 ............................ TAACATCGTCTGATACTCTACAAGCTATAGTTTTTG 7294 28 100.0 36 ............................ TTGGAAAAGGGTTAGTCGTAAAGCGATTAAAAGAGC 7230 28 100.0 36 ............................ CCATAACTACTATTTGTAAGTGTAGTTTTGAAGCTA 7166 28 100.0 37 ............................ ATTTACAAATAGAATTAGAAAAGCAACAGCAGTTTAA 7101 28 100.0 37 ............................ GCAAAAGGAATGTCTGTGCTTGAAGCTATGAAAGCAG 7036 28 100.0 36 ............................ GTTGGAAGTGCAATAGATATTGAATTAAATAAAAAA 6972 28 100.0 36 ............................ CCAGCAGTTGTAGAAGCAATTGACATTTTAAAAATT 6908 28 100.0 36 ............................ TTTTATCACGTGTAAATTTAGCATTTTTTCTTAAAT 6844 28 100.0 35 ............................ ATGATACAGGAACCCAAAAAGAAAACAGTAGATTC 6781 28 100.0 35 ............................ ATTAAAGAGAAGATAGCTAAATTATTAGGATGTAC 6718 28 100.0 37 ............................ ATGAACACTCTTTCCACTCATTTCAGATAGAGCTTGT 6653 28 100.0 37 ............................ GCAATTTCATCTATGCCATTCTTACGCTCTATCGCTA 6588 28 100.0 37 ............................ CACTTATAATATTATTTTTATTTCTTCACACTTGTTT 6523 28 100.0 37 ............................ AGTGCATTTGCTAAAGAATATATGGTTTTTATTCTTG 6458 28 100.0 37 ............................ ACATTTATACCAGTGAAGCTAAAGTCCATCCCTAGAA 6393 28 100.0 35 ............................ TAGTGATATGGAGATGGTTAGAAATTATGTAAATA 6330 28 100.0 37 ............................ TACCTAAATATTCTCTAGCTTCTTTATGACTTAATTT 6265 28 100.0 35 ............................ GTTTTTATTTAAAAATTAAAAAGACGAACTATTTT 6202 28 100.0 36 ............................ CTATACCTATATACATACTGTATTAAACTTAAATAA 6138 28 100.0 36 ............................ TCTAATCCTATGTAATATTGTTCTTTAGTTCCACTG 6074 28 100.0 37 ............................ CATAATAAACATACTTATACACATATATTATAATAGT 6009 28 100.0 36 ............................ ATTTCCTCTAATGTACTACAAGCTTGTTCCATAATT 5945 28 100.0 36 ............................ ATTTTTTCAGCTAATTGATTTAAGGAAAGTTCTTTT 5881 28 100.0 37 ............................ GGCAATTTATCAAAAGCTTCTCCAATATTTCCTATAA 5816 28 100.0 36 ............................ TTTTTCTTTATTGTTCTTTCTGTATTTTCCTCCCAA 5752 28 100.0 36 ............................ TAATAAAGATGGAATGTGTGGCTCTGAATCAATAGA 5688 28 100.0 36 ............................ CCGGACCATTTACCTAGTTTTGCAAGTTGAACCATA 5624 28 100.0 36 ............................ CTAAATTAATATCCAAAGTTTTTGTATTTATGTTTT 5560 28 100.0 37 ............................ TCATTAGTAGCTGCTTTAAAAACATCCGTCTTTGCAA 5495 28 100.0 36 ............................ TAGTTATAGCTAAAACTTATCTTATTGCCTTGTATT 5431 28 100.0 37 ............................ GTTCAATATAGTTATAAGGATCAAAAAAAGAAAGAAA 5366 28 100.0 37 ............................ TTATTTACAGCGTACTTTACTGCGAAAAATGCCATAG 5301 28 100.0 36 ............................ TAATTATTAACTTTGGCACCTGTCATCTGTCCCAAT 5237 28 100.0 37 ............................ CTAACGACAGTAGTCATATCAGGAGCAGTTTCTTCGG 5172 28 100.0 36 ............................ ACTGTAATCATTTCAGAGATTGGCAAGAAATAATTA 5108 28 100.0 37 ............................ ATTACTAAAGGTGAAATGGTGAGTGCTGATGCAGTAA 5043 28 100.0 37 ............................ AAGACATTACAAGGCTTGCAAACAGTCACTAATAAAA 4978 28 100.0 36 ............................ AGCACTAAGGGAGAACGTAATATGGATCAACAAAGA 4914 28 100.0 37 ............................ GAAATTATTTATGAAAATAATGCTGAATTACAGGCTA 4849 28 100.0 36 ............................ TGTCAACACCAAAACAACACTATTAAAAAAAATAAT 4785 28 100.0 36 ............................ AAATATAAATCATAAACAATAAATAAAAACTAACTT 4721 28 100.0 37 ............................ GAAGGTAATGATTCAGATGTTAAATTTGGATATGCAG 4656 28 100.0 36 ............................ ATATTTCAAACAGTTTTTCCTATAATTGGGCAAATA 4592 28 100.0 36 ............................ TGGGAACGTTGGGAAAATATCATAGAAGAATTTAAA 4528 28 100.0 37 ............................ ACTATTTTCTCTAAGTTCTTATCATTTGCAGTATCAG 4463 28 100.0 36 ............................ CTATAAAAAGTAATCATCTTTCTCTAACTCCTAACT 4399 28 100.0 37 ............................ GTTGAAGTAGCGACTAAAGCTTTTCCAAAAGTAGTTG 4334 28 100.0 36 ............................ CGTATAAGAGCATTTATTAAATTTATAAAGAATACA 4270 28 100.0 36 ............................ TCATATAAAGCAAGAGTGGCAAGGTTAGATTTAATT 4206 28 100.0 37 ............................ ACATTTTTGCAAGGATTGAGTGATTATTTAAGCGATA 4141 28 100.0 37 ............................ ATACATTCAACCTCAGAAACTTTAGCACCAATTGAAA 4076 28 100.0 35 ............................ TCGTAAATTCTTGTAGTACCATCACTAGAGTACTG 4013 28 100.0 36 ............................ CCTTATAATAGCATATCAAGTGCAAGTGCATTATAT 3949 28 100.0 36 ............................ TTGCAAATACTCTTTATTTTGGTTAACTATATTTTC 3885 28 100.0 37 ............................ ACAGGAGAAGAAATTACAGTATTACTTAAAATATCTA 3820 28 100.0 37 ............................ TGATAATGCACAAAGTAGCGTTAAAAACTGTCATTTC 3755 28 100.0 38 ............................ TCTTAAAATCAATTAACTTATTGTATCTAAATTATTTA 3689 28 100.0 36 ............................ TTTAATTTCGTGCATCTATTGTTAATAGATATTAAT 3625 28 100.0 37 ............................ ATATAATATTTAAACTCTTCAATTGTATAAACAGTCT 3560 28 100.0 36 ............................ AAAGGAACATATATCATAGATTGTTTAACGGATCTA 3496 28 100.0 36 ............................ AGTAAGTAATCTAAGCTTACATTGAATAGATCAGCA 3432 28 100.0 36 ............................ GTATTAGATAAATCTTGTGCTTTTAAACCACTTACA 3368 28 100.0 35 ............................ CCTATAACGATACAATCATCTACAACAGCAATTGC 3305 28 100.0 37 ............................ AGAGAATTTCTTTGAATAAGTAAAAAATCTTTTACCA 3240 28 100.0 36 ............................ AATAAAGGGGGAATCCATAACGGAAAAGAATAAGAA 3176 28 100.0 36 ............................ TAAATACCTCCTATTTAGTACCAGTAACAACATAAT 3112 28 100.0 37 ............................ AAAATAGCAGTAACAGCCGAAGTAACATTTTCCATAC 3047 28 100.0 36 ............................ CAAACTATAAAATTAATTAACTATGGAGAATTACCA 2983 28 100.0 37 ............................ GCAAATTCAATAACCGTTAATAAGTCATACACTTCTC 2918 28 100.0 35 ............................ ATGAATATTCAAGAAAACAATCTTCACACAATATA 2855 28 100.0 36 ............................ ACGACAAATAATCAACAGTAACTTTATTACGACGAG 2791 28 100.0 36 ............................ TTTTCTACAAGATATCCCAATATGTCATTAAGAGAA 2727 28 100.0 36 ............................ CCAATCAGAGGATTAAAGAAATGATAAAAGAATCTA 2663 28 100.0 38 ............................ ACTTATAGTTCACGTTCTATATCAAATAATTATTATTA 2597 28 100.0 37 ............................ TTTGATAAGCGTTGAATAGCTTCATTTAAGGTTTCTA GG [2579] 2530 28 100.0 36 ............................ TACTCAGTTTTTAGAGTGGAAGTATGGTAATAAAAC 2466 28 100.0 36 ............................ TAGGCTAAAGTGGCAGGGTTAAACTCGATATATATA 2402 28 100.0 36 ............................ GTGCATATTCTGCATTATACAGACCAGGAACAACTG 2338 28 100.0 36 ............................ CATAAAAGAAAATAAGTTGGATGAAGAAATGAGAGA 2274 28 100.0 35 ............................ GTTAAAGCAAGAGCAATTCAACTTATGATATCTAA 2211 28 100.0 37 ............................ GCAAGAGGTCAACATGTTAAATTTGATGGTGAAATTA 2146 28 96.4 0 .G.......................... | ========== ====== ====== ====== ============================ ====================================== ================== 90 28 100.0 36 GTTTTATCTTAACTAGAGGAATGTAAAT # Left flank : AAGCATCTAATAAAAGATGAAAAATATAAGCCATTGAAAGCTTGGTGGTAAAAATGTTTGTAATAATTACTTATGATGTTAACGAAAAAAGAGTAAATAGAGTAAGAAAAGTTTTAAAAAAATATATAACGTGGTGCCAGAATTCAGTTTTTGAAGGGGAAATAACTGAAGGAAAATTAACAAAATGCATGGCAGAAGTTAAAAAATATTTAGTAGACTCAGAAGATTCACTATATATTTATAGGATTCCTTATACAAAAAACATACAGAAGAAAGTTATAGGGATAGAAAAGAATCTAGATGAATTATTTTTATAATTGCAGTAAGCGATTTTTATTACTAGATACATCTAAAGTTAGAAGAAATCTAGATTTGAAGAACATTTTATTTAGTTGCAAAAATCATTACTGTAGCTTTACTGCAAAAATTTATGTTATAATATAAAAAAATGCACGCTCATGTGGCTAAAATAGGTGATTTGAACTATGTATTTTTTCGGG # Right flank : TAATTTTAAGAGCTTATAAATAACCAAGAGTAGTTGCCAAAAATAAAAAATAATAACTAAAGCCAAAGAAAATTTAAATTTAATTGATTTTTATGTTTACAAAATGGAAGAAAAACTTCTTTAAGTATATGTAAAGCAAATGAGTTAGCTAACCTCAAAGGCTTAATTAAAATTATTTTTATATTTTAGGAGGAAAAAATTATGGGTTATTTAGGAATTAACATGTCAGGATCAAGTATACCAGTATATTCTACAAATATTGAGGATAACACAAGAATAGGAAGTTTGGGATACAAAGAACGATTTGCAGTTACAAGCAGTGGACCAATTGCAATAGTTATAAAGTTTGTAAATTCTTCAGGGAGCTGGGTTGATGGTAGATTAGATCCAGATGCTGATATTAGTGATTGGTGTGAATATTTATTTAGATCAAGCGCAATACCAGCTGGATATTTCCGCACTGATAGTACAGTAAGAATGTATGATTCATCAGGAAGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //