Array 1 967713-968838 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051381.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM 24359 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 967713 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 967774 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 967835 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 967896 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 967957 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 968018 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 968079 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 968140 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 968201 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 968262 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 968323 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 968384 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 968445 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 968506 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 968567 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 968628 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 968689 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 968750 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 968811 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 985096-986759 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051381.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM 24359 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 985096 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 985157 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 985218 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 985279 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 985346 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 985407 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 985468 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 985529 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 985590 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 985651 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 985712 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 985773 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 985834 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 985895 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 985956 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 986017 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 986078 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 986139 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 986200 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 986303 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 986364 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 986425 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 986486 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 986547 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 986608 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 986669 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 986730 29 96.6 0 A............................ | A [986756] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //