Array 1 11348-12287 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXX01000041.1 Neisseria sicca strain C2014002478 C2014002478_S40_ctg_11937, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 11348 36 100.0 31 .................................... GCGATAGAATTGGTTATAGACTTCCATATAA 11415 36 100.0 32 .................................... TTTAGAATATCTTCTCTTTAAAAGAAATCAAG 11483 36 100.0 34 .................................... CCATTCTGCAGTAGCTAATACTTCTTCTTGTTTA 11553 36 100.0 33 .................................... TTAGGTTAACCATCTACCATACTAATTGTTAAC 11622 36 100.0 35 .................................... TGTTCCAACGCGTTCAAATCCGTGTGTTGTTGAAG 11693 36 97.2 35 .G.................................. ATAAATAAATCAACTTCATCAGCAAAAAATGATAA 11764 36 100.0 33 .................................... ACCGTTCGGGTTGGAAAGACGCTTTGGGTTAAT 11833 35 97.2 34 ................-................... ACGATTTCCTTGCCTTCTTCGGCAATGCTTTTTG 11902 36 100.0 33 .................................... GAGATGATACGAGCTGGATTGATTTCGAAATTT 11971 36 97.2 33 ....................T............... GAACTGGTGAGCTTTACCAACTCAGTTCCTTTG 12040 36 94.4 33 ............A.......C............... TCACACGCCAATCGTGTATCGCCCGTCAGTACA 12109 36 77.8 35 ..............T.....T...A.TCT.....CT TTTCAGACGACCTCAAACCAAGGTCGTCTGAAAAT C [12140] 12181 36 91.7 35 A......A..C......................... CCAGCGTCTCCCGCCAGTTTGTTAATATAGTCGGC 12252 36 80.6 0 .......A..C......T..C.........A..A.T | ========== ====== ====== ====== ==================================== =================================== ================== 14 36 95.4 34 GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Left flank : AACTGATTTTTTGCGAACTCAAATCCGATTTAAGCTCCGAAAGCAAGCTGGCAGACCCGCTAAGGCAAGTGATCGACCAAAGCCTCAACATGGGCAAAGTACGCCGCGTCCTGATTTTGTCGCCCAAAATCCAAAATGATTACCAAAAAGAAGAACGTAAAAAACCACAATGGACGGAATTCGAGCGCAACTGCGCCGCCAAAAACATCCAAATCATCATCGCCCGCGACAAAGAAGCGCTGAAAGCCCTGACAAGCTGACATCGAAGTTTCTTGACCATGGAAACGTCGTCTGAAAACGTTAAAAAACATTGTGAAATGCAAAGCAGACGGCTATAATCCGCAACACAAGTTTTCCGACGGATAGCGAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAAGGTTTTATTAAATAATGTCTTTGTTAGTTAAGGAAAAATACTAACTTTTCTTAACTATATAGAAGATTGAAAATAATGAAATTTTTTGACCGAGTGCA # Right flank : TCAAACAGCCTTGATGGTTCGTTCCATCAAGGCTGTTTTTGCGTCGGGTGTATTGTCAAGCTGCTTGGATAATGCGGTATTGCCCGTTGCCGAATACGGTTTCTTTGCCCAAGTGCAGCCATTGTCCGATATACAGCATTTGCGAGAAGGCGGGCGGAAGGCCGGTCAGCTGCCATGTGCCGATTGCGCCGCTAAGGGGCGTAATCTGCTTTTGACGGTTGGAAAAACGGCGGTGTTCGTGCCATGAAAGTCGGGGCGGGACGCCTTGTCCGCCGATTTGGGCGGACAGCTCGGCAGCGTTTGCATTGTTGCCCCAGTGCAGATGGGCAAGCGTCAGATAGCGGCGCAGGAGCTGGCGCAGGAAAACCGCCTGCGTCAGTTCGGTTTCCCGCAAAATCTTGCCTTTTTGCTGGATACGCAGAGGCGTAAGCAGCTGGATATACGCATGGGCGGGATAGCGTTCGGGCAGCCTGATATGGTTGTCGTGTAGCGCGATGGGG # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 16821-15522 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXX01000041.1 Neisseria sicca strain C2014002478 C2014002478_S40_ctg_11937, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 16820 36 100.0 35 .................................... ACGGCATTACCCGCGCCCTGATCGACTTCGACGCT 16749 36 100.0 34 .................................... GTACGGTCGCGATGTGTTGCCCATTTTCATCTAA 16679 36 100.0 35 .................................... GAGAGATTGTGTTCGTTCTCAACGCACCCACCTAA 16608 36 100.0 34 .................................... TCCAACATCTCACGAATAGTACCTGCATATTTGT 16538 36 100.0 35 .................................... GGTTTCTTGTGCGTTCATTTTGATTTCCTTTTCAG 16467 36 100.0 33 .................................... AGCTTATTAGGCTCGAAGAGACTCACCAGCTCA 16398 36 100.0 34 .................................... TTAAGTGATTAAAATTTTCCATAATTTTATATCT 16328 36 100.0 33 .................................... ATGCCTGCACGCCGAAAGCCACTGCTGATGCAA 16259 36 100.0 34 .................................... TTTGAAATTCGTAAGACTGTTCTTGCAACCATAT 16189 36 100.0 33 .................................... TTCATTAAGACGTTTAACTGATTGATCAATAGC 16120 36 100.0 34 .................................... CAAAAGAAACGGAATACATTCCCATCGAAATCAA 16050 36 100.0 34 .................................... TAATGGATTACTATTAAACTACCCCTCTACCTAG 15980 36 100.0 35 .................................... TTAACGTACCCAATTACTTCAGGTAACGTGGTTAA 15909 36 100.0 33 .................................... ACAACATCGAGTACCGATTTAGCGGTTCTCTTC 15840 36 100.0 33 .................................... GGCACGGAATTCTACATCTTTGTACAGGTCTAC 15771 36 100.0 35 .................................... TAAACAACCACATTGGATAGGTCAAATTCACCTGT 15700 36 97.2 34 ...................T................ TCATGATTCTTATTCTTATGGGTATACAAGTGTA T [15671] 15629 36 100.0 35 .................................... ACATCACCGTGTTCCCATGCGTGTCTAATTGTTGC 15558 36 80.6 0 ....................T...C.A.C....TCT | C [15524] ========== ====== ====== ====== ==================================== =================================== ================== 19 36 98.8 34 GTCGGAAGACTTGCCCCACGAATCGGGGATTAAGAC # Left flank : GGCGGTTGATTGCGCGGACGCGTTGCGGCAAGCATTTTCAGACAGCTTGAAAAAAGTGTCAGATGTTTTGAAAGCAGAAAAAACGCCCACATTGTCCGTCGGTTTGGCGATTTGCCACATCAGCACGCCGCTCGGCAATGTACGCCGTTTGGCAAAACACGCGGAGAAAGTGGCAAAAGGCGACAATTATCCTGCCGATCAACAGCGCAATGGATTGGGGATTACCTTGTCCGTGCGTTCAGGCTCGGACAGCGATTGGCGTGTGCAATGGAGTGATGAAGCAGGTTTGGCAGCATTTAAAAAATGGCAAAACCGGTATCAGAAGAAAGAAATCAGCAGCCGTATTGCCTACGACAGCCGCGATATCTTTATGCGCACGGATTTTCCGAAATCCGCCAATTTATCCTTCGATCTGCACCAAAATATCCGCCAAGCCGAGTTTACTCGAATGCTGGATAGGGCGCGAAATATGTCGGGCGGCGAATTGAAAGACGATGTGA # Right flank : TTTCAGACGACCTCAAGCCTGGGTCGTCTGAAAACGTAGGTCGGATTCTTGAATCCGACAAATATTCCGACGTTTCTACATAGCAAAACAGCCTTGATATTGCATCAAGGCTGTTTTTGTTGGCGGAGGGTTTGTGTGAGTTCGGGGTCGTCTGAAAGGCGGCTTTGCGCTTACAGCTTGCCCACACCGCCCAAGATGATGCCTTCGGGCAAGGCGGGTTTGCCCAGGGCATGGATTATGCTGCTGTTGGGCAGGGGATAGCAGCGTAAATTGTCCTGCTTGGCGTTGAGCATTTTGCAAAGTGTTTCAAAGCATTGCCTTGCTTGATCACTGCTGCCGATGTGCAGGAAAACGCTGTTTTGCAGGGGGATGGCGTGCTGTATTAAATAGCGGTGTGCTTTTCGCAGGCGGCGCGGGTCGGCGATGTCGTAGGCGATGAGGTGGCGCATTTTTATTCTAAGGTGGTCAGTCCGCTTAATTGGATTTCAGGCTGCCCGATG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACGAATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 1885-3365 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXX01000070.1 Neisseria sicca strain C2014002478 C2014002478_S40_ctg_11995, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 1885 32 100.0 34 ................................ GCATTACGATGTTTGGCTGTATCAACACAGCCTT 1951 32 100.0 34 ................................ GACCATTTTGCGGTCGGCAAGGTAGTCGAGCTGC 2017 32 100.0 33 ................................ TTGCAAAAGAAGAGCTGACTATCGCTGAATTTG 2082 32 100.0 34 ................................ ACTTCCTGAACCATCCCCATTACCATCAGCATTA 2148 32 100.0 35 ................................ CTCGAATCGTTATTTGTCGTCTCAAAAGCGAATGG 2215 32 100.0 33 ................................ AGTTAACAAAATTTATGGCGAAGCAGTAAAAAG 2280 32 100.0 33 ................................ AATCCAGCAAATCTGCAAGTTCCCCAATATCAG 2345 32 100.0 34 ................................ AGGCGCAGCCAAAGACCCGATGCAGGCTTGGGAA 2411 32 100.0 34 ................................ CTGCACCAGTTCGTCGCGCAGCAGGTCGATTTCT 2477 32 100.0 35 ................................ ATTTGCATGATGCAGCAAAAGGCAGACCCGTTAAA 2544 32 100.0 35 ................................ GCTATCGGGGCATATCCTGATATATCGCTTGCCGA 2611 32 100.0 33 ................................ CGAAAAGATGGGGCGTTTCAGCGTCGGAGGTAT 2676 32 100.0 40 ................................ CAATGGCCAAGTGCGTTGACCGAAATATAATAAAATACCG 2748 32 100.0 33 ................................ CCCAAAGCCGACCACGACGACGGACCCGATGCG 2813 32 100.0 34 ................................ TGTTGCCATCATGTCTTTGCCTGCAATGGCAGAA 2879 32 100.0 35 ................................ GCATACGTCAGGCGGCGGACGACATCCACCCCGAC 2946 32 100.0 34 ................................ TCGGTTATAAAACGCCCATTTCGGGCTTAAAAGG 3012 32 100.0 34 ................................ TCTTGCTGTGCCCGGTATCGACCGTCGCATGGGT 3078 32 90.6 36 ...........CG..................T AAGGCTAATTACCCGCATACATGGCGGACGGTAGAG 3146 32 90.6 34 ...........CG..................T AATGACGGCACGTCTGCCGGTTTTGATTTCGGCC 3212 32 93.8 25 ...........CG................... ATATGTACCTGTACGAGCACCGATG Deletion [3269] 3269 32 90.6 33 .....T.....C...................T AGACGACCTCTACCGTACTGGCGATTGATTTTG 3334 32 84.4 0 .T.........C...T.A...C.......... | ========== ====== ====== ====== ================================ ======================================== ================== 23 32 97.8 34 CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Left flank : GCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAAGACAAACTCTTAAAAACCTATAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGTAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTAAATCGCCAACCTACGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTGGGATTGTTCTTTAACAATCAGGATATTGCAAATGCCGGTGTAACAGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTAGGAGCTTAGCGAAATCAGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGAT # Right flank : CCCGTAGCCGAGGGAGCAGAGGTAGAGGCGCAGGCCCAGCCATCTTCAGCTAACCATATGTCGAAACCAGACTGAGACCTTTGCAAAATTCCCCAAAATCCCCTAAATTCCCATCAAGACATTTAGGGGATTTCTCATGAGCACCTTCTTCCAACAAACCGCACAAGCCATGATTGCCAAACACATCGACCGCTTCCCACTATTGAAGTTGGATCAGGTGATTGATTGGCAGCCGATCGAACAGTACCTGAATCGTCAAAGAACCCGTTACCTTAGAGACCACCGCGGCCGTCCCGCCTATCCCCTGTTGTCCATGTTCAAAGCCGTCCTGCTCAGACAATGGCACAGCCTCTCCGATCCCGAGCTCGAACACAGCCTCATCACCCGCATCGACTTCAACCTGTTTTGCCGTTTTGACGAACTGAGCATCCCCGATTACAGCACCTTATGCCGCTACCGCAACTGGCTGGCGCAAGACGACACCCTGTCCGAATTGCTAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //